CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 26 & Codon = Tca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp226A26SA206SnonsynGcaTca1691691881-883

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp226A26SGcaTca169169All0.000032
ORF1ab/nsp226A26SGcaTca3636AY.40.000056
ORF1ab/nsp226A26SGcaTca2222AY.250.000132
ORF1ab/nsp226A26SGcaTca1919B.1.617.20.000072
ORF1ab/nsp226A26SGcaTca99AY.29.10.001985
ORF1ab/nsp226A26SGcaTca99B.10.000082
ORF1ab/nsp226A26SGcaTca99B.1.1.70.000008
ORF1ab/nsp226A26SGcaTca88AY.50.000165
ORF1ab/nsp226A26SGcaTca77AY.200.000272
ORF1ab/nsp226A26SGcaTca55AY.1020.000133
ORF1ab/nsp226A26SGcaTca44B.1.2210.000284
ORF1ab/nsp226A26SGcaTca33AY.4.20.000065
ORF1ab/nsp226A26SGcaTca33B.1.1.630.001157
ORF1ab/nsp226A26SGcaTca33B.1.4220.002437
ORF1ab/nsp226A26SGcaTca33C.370.000348
ORF1ab/nsp226A26SGcaTca22AY.290.000032
ORF1ab/nsp226A26SGcaTca22AY.4.2.10.000298
ORF1ab/nsp226A26SGcaTca22AY.430.000009
ORF1ab/nsp226A26SGcaTca22AY.440.000012
ORF1ab/nsp226A26SGcaTca22AY.920.000575
ORF1ab/nsp226A26SGcaTca11A0.000387
ORF1ab/nsp226A26SGcaTca11A.30.002096
ORF1ab/nsp226A26SGcaTca11AY.1100.000113
ORF1ab/nsp226A26SGcaTca11AY.260.000028
ORF1ab/nsp226A26SGcaTca11AY.30.00001
ORF1ab/nsp226A26SGcaTca11AY.39.10.00004
ORF1ab/nsp226A26SGcaTca11AY.4.50.000107
ORF1ab/nsp226A26SGcaTca11AY.450.000122
ORF1ab/nsp226A26SGcaTca11AY.470.000031
ORF1ab/nsp226A26SGcaTca11AY.98.10.000048
ORF1ab/nsp226A26SGcaTca11B.1.1.4090.002833
ORF1ab/nsp226A26SGcaTca11B.1.1.700.000341
ORF1ab/nsp226A26SGcaTca11B.1.1280.000635
ORF1ab/nsp226A26SGcaTca11B.1.1770.000013
ORF1ab/nsp226A26SGcaTca11B.1.177.210.000076
ORF1ab/nsp226A26SGcaTca11B.1.177.810.000189
ORF1ab/nsp226A26SGcaTca11B.1.5960.000087
ORF1ab/nsp226A26SGcaTca11C.300.001727
ORF1ab/nsp226A26SGcaTca11P.1.100.000269

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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