CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 26 & Codon = Aca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp226A26TA206TnonsynGcaAca6186170.998382881-883

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp226A26TGcaAca617618All0.000118
ORF1ab/nsp226A26TGcaAca117117B.1.1.70.000105
ORF1ab/nsp226A26TGcaAca5757AY.40.000089
ORF1ab/nsp226A26TGcaAca4747Q.10.005937
ORF1ab/nsp226A26TGcaAca4444P.1.150.010223
ORF1ab/nsp226A26TGcaAca4242AY.250.000253
ORF1ab/nsp226A26TGcaAca3939B.1.5880.035487
ORF1ab/nsp226A26TGcaAca3333B.1.1.5190.00131
ORF1ab/nsp226A26TGcaAca2525B.1.177.830.037037
ORF1ab/nsp226A26TGcaAca2323AY.440.00014
ORF1ab/nsp226A26TGcaAca2121B.1.617.20.000079
ORF1ab/nsp226A26TGcaAca1919B.10.000174
ORF1ab/nsp226A26TGcaAca1919B.1.2430.001322
ORF1ab/nsp226A26TGcaAca1111AY.1030.000068
ORF1ab/nsp226A26TGcaAca1010AY.430.000044
ORF1ab/nsp226A26TGcaAca1010B.1.360.001459
ORF1ab/nsp226A26TGcaAca66B.1.20.000053
ORF1ab/nsp226A26TGcaAca55AY.350.001165
ORF1ab/nsp226A26TGcaAca55B.1.177.810.000947
ORF1ab/nsp226A26TGcaAca55P.20.000933
ORF1ab/nsp226A26TGcaAca44AY.150.008889
ORF1ab/nsp226A26TGcaAca44B.1.10.000073
ORF1ab/nsp226A26TGcaAca44B.1.1600.000125
ORF1ab/nsp226A26TGcaAca33AY.1180.000188
ORF1ab/nsp226A26TGcaAca33AY.30.00003
ORF1ab/nsp226A26TGcaAca33B.1.177.600.000655
ORF1ab/nsp226A26TGcaAca33Q.80.000495
ORF1ab/nsp226A26TGcaAca120.055556
ORF1ab/nsp226A26TGcaAca22AY.1020.000053
ORF1ab/nsp226A26TGcaAca22AY.1110.000366
ORF1ab/nsp226A26TGcaAca22AY.260.000057
ORF1ab/nsp226A26TGcaAca22AY.330.000134
ORF1ab/nsp226A26TGcaAca22AY.410.000588
ORF1ab/nsp226A26TGcaAca22AY.50.000041
ORF1ab/nsp226A26TGcaAca22AY.75.10.000361
ORF1ab/nsp226A26TGcaAca22AY.99.20.000184
ORF1ab/nsp226A26TGcaAca22B.1.1.2220.000408
ORF1ab/nsp226A26TGcaAca22B.1.1770.000026
ORF1ab/nsp226A26TGcaAca22B.1.2210.000142
ORF1ab/nsp226A26TGcaAca22B.1.5950.000522
ORF1ab/nsp226A26TGcaAca22B.1.6230.001073
ORF1ab/nsp226A26TGcaAca11AY.1080.001103
ORF1ab/nsp226A26TGcaAca11AY.1130.000142
ORF1ab/nsp226A26TGcaAca11AY.1160.000287
ORF1ab/nsp226A26TGcaAca11AY.1190.000035
ORF1ab/nsp226A26TGcaAca11AY.340.000097
ORF1ab/nsp226A26TGcaAca11AY.390.000025
ORF1ab/nsp226A26TGcaAca11AY.4.20.000022
ORF1ab/nsp226A26TGcaAca11AY.450.000122
ORF1ab/nsp226A26TGcaAca11AY.60.000041
ORF1ab/nsp226A26TGcaAca11AY.750.000056
ORF1ab/nsp226A26TGcaAca11AY.98.10.000048
ORF1ab/nsp226A26TGcaAca11B.1.1.2140.000055
ORF1ab/nsp226A26TGcaAca11B.1.1.280.000311
ORF1ab/nsp226A26TGcaAca11B.1.1.3690.000446
ORF1ab/nsp226A26TGcaAca11B.1.1.470.005348
ORF1ab/nsp226A26TGcaAca11B.1.1890.004292
ORF1ab/nsp226A26TGcaAca11B.1.258.140.00098
ORF1ab/nsp226A26TGcaAca11B.1.36.160.001425
ORF1ab/nsp226A26TGcaAca11B.1.36.170.000494
ORF1ab/nsp226A26TGcaAca11B.1.36.210.00216
ORF1ab/nsp226A26TGcaAca11B.1.36.350.002604
ORF1ab/nsp226A26TGcaAca11B.1.3750.00082
ORF1ab/nsp226A26TGcaAca11B.1.564.10.001577
ORF1ab/nsp226A26TGcaAca11B.1.5960.000087
ORF1ab/nsp226A26TGcaAca11B.1.617.10.000129
ORF1ab/nsp226A26TGcaAca11B.1.6210.000089
ORF1ab/nsp226A26TGcaAca11B.1.6250.002353
ORF1ab/nsp226A26TGcaAca11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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