CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 256

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2256T256IT436InonsynaCaaTa294829380.9966081571-1573
ORF1ab/nsp2256T256IT436InonsynaCAaTC294880.00271371571-1573
ORF1ab/nsp2256T256IT436InonsynaCAaTT294820.0006784261571-1573
ORF1ab/nsp2256T256TT436TsynacAacG9286590.7101291571-1573
ORF1ab/nsp2256T256TT436TsynacAacC9282030.218751571-1573
ORF1ab/nsp2256T256TT436TsynacAacT928660.07112071571-1573
ORF1ab/nsp2256T256ST436SnonsynAcATcC70330.4714291571-1573
ORF1ab/nsp2256T256ST436SnonsynAcaTca70330.4714291571-1573
ORF1ab/nsp2256T256ST436SnonsynAcATcT7020.02857141571-1573
ORF1ab/nsp2256T256ST436SnonsynaCAaGC7010.01428571571-1573
ORF1ab/nsp2256T256ST436SnonsynAcATcG7010.01428571571-1573
ORF1ab/nsp2256T256AT436AnonsynAcaGca40390.9751571-1573
ORF1ab/nsp2256T256AT436AnonsynAcAGcT4010.0251571-1573
ORF1ab/nsp2256T256FT436FnonsynACATTC29270.9310351571-1573
ORF1ab/nsp2256T256FT436FnonsynACATTT2920.06896551571-1573
ORF1ab/nsp2256T256delT436deldelACA---232311571-1573
ORF1ab/nsp2256T256KT436KnonsynaCaaAa1090.91571-1573
ORF1ab/nsp2256T256PT436PnonsynAcaCca1060.61571-1573
ORF1ab/nsp2256T256del1T436del1delacAac-1060.61571-1573
ORF1ab/nsp2256T256PT436PnonsynAcACcT1040.41571-1573
ORF1ab/nsp2256T256del1T436del1delAcA-cT1040.41571-1573
ORF1ab/nsp2256T256KT436KnonsynaCAaAG1010.11571-1573
ORF1ab/nsp2256T256LT436LnonsynACaTTa750.7142861571-1573
ORF1ab/nsp2256T256LT436LnonsynACaCTa710.1428571571-1573
ORF1ab/nsp2256T256LT436LnonsynACATTG710.1428571571-1573
ORF1ab/nsp2256T256XT436XnonsynACaTAa430.751571-1573
ORF1ab/nsp2256T256XT436XnonsynACaTGa410.251571-1573
ORF1ab/nsp2256T256NT436NnonsynaCAaAC3311571-1573
ORF1ab/nsp2256T256del2T436del2delaCAa--2211571-1573
ORF1ab/nsp2256T256MT436MnonsynaCAaTG2211571-1573
ORF1ab/nsp2256T256YT436YnonsynACATAC2211571-1573
ORF1ab/nsp2256T256RT436RnonsynaCaaGa210.51571-1573
ORF1ab/nsp2256T256RT436RnonsynaCAaGG210.51571-1573
ORF1ab/nsp2256T256WT436WnonsynACATGG1111571-1573
ORF1ab/nsp2256T256CT436CnonsynACATGC1111571-1573

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2256T256IaCaaTa29382948All0.000562
ORF1ab/nsp2256T256IaCAaTC82948All0.000002
ORF1ab/nsp2256T256IaCAaTT22948All0
ORF1ab/nsp2256T256TacAacG659928All0.000126
ORF1ab/nsp2256T256TacAacC203928All0.000039
ORF1ab/nsp2256T256TacAacT66928All0.000013
ORF1ab/nsp2256T256IaCaaTa884884B.1.1.4160.8
ORF1ab/nsp2256T256IaCaaTa292292B.1.1.70.000261
ORF1ab/nsp2256T256TacAacG229248B.1.1.70.000205
ORF1ab/nsp2256T256TacAacC10248B.1.1.70.000009
ORF1ab/nsp2256T256TacAacT9248B.1.1.70.000008
ORF1ab/nsp2256T256IaCaaTa150150AY.40.000233
ORF1ab/nsp2256T256TacAacC101111B.1.10.001832
ORF1ab/nsp2256T256TacAacG6111B.1.10.000109
ORF1ab/nsp2256T256TacAacT4111B.1.10.000073
ORF1ab/nsp2256T256IaCaaTa9797AY.420.003902
ORF1ab/nsp2256T256IaCaaTa9393AY.1180.005826
ORF1ab/nsp2256T256IaCaaTa9292B.1.2210.006535
ORF1ab/nsp2256T256IaCaaTa8080B.1.617.20.000301
ORF1ab/nsp2256T256IaCaaTa7878AY.440.000475
ORF1ab/nsp2256T256IaCaaTa7676B.1.36.380.124795
ORF1ab/nsp2256T256TacAacG5874P.10.000914
ORF1ab/nsp2256T256TacAacC1574P.10.000236
ORF1ab/nsp2256T256TacAacT174P.10.000016
ORF1ab/nsp2256T256SAcATcC3370All0.000006
ORF1ab/nsp2256T256SAcaTca3370All0.000006
ORF1ab/nsp2256T256SAcATcT270All0
ORF1ab/nsp2256T256SAcATcG170All0
ORF1ab/nsp2256T256SaCAaGC170All0
ORF1ab/nsp2256T256IaCaaTa6363B.10.000577
ORF1ab/nsp2256T256IaCaaTa6262AY.30.000617
ORF1ab/nsp2256T256IaCaaTa5656B.1.4290.001318
ORF1ab/nsp2256T256IaCaaTa5555B.1.2410.044643
ORF1ab/nsp2256T256IaCaaTa5454B.1.10.00098
ORF1ab/nsp2256T256IaCaaTa5252P.1.140.002486
ORF1ab/nsp2256T256IaCaaTa4146P.10.000646
ORF1ab/nsp2256T256IaCAaTC446P.10.000063
ORF1ab/nsp2256T256IaCAaTT146P.10.000016
ORF1ab/nsp2256T256TacAacG3442AY.430.000151
ORF1ab/nsp2256T256TacAacC442AY.430.000018
ORF1ab/nsp2256T256TacAacT442AY.430.000018
ORF1ab/nsp2256T256AAcaGca3940All0.000007
ORF1ab/nsp2256T256AAcAGcT140All0
ORF1ab/nsp2256T256IaCaaTa3939B.1.1600.001216
ORF1ab/nsp2256T256IaCaaTa3636C.350.027864
ORF1ab/nsp2256T256IaCaaTa3434B.1.1770.000448
ORF1ab/nsp2256T256FACATTC2729All0.000005
ORF1ab/nsp2256T256FACATTT229All0
ORF1ab/nsp2256T256IaCaaTa2626B.1.20.000229
ORF1ab/nsp2256T256TacAacG2425AY.1030.000149
ORF1ab/nsp2256T256TacAacC125AY.1030.000006
ORF1ab/nsp2256T256IaCaaTa2525AY.250.00015
ORF1ab/nsp2256T256TacAacG1725AY.40.000026
ORF1ab/nsp2256T256TacAacT425AY.40.000006
ORF1ab/nsp2256T256TacAacC425AY.40.000006
ORF1ab/nsp2256T256IaCaaTa2525AY.46.30.023343
ORF1ab/nsp2256T256TacAacG1725B.1.617.20.000064
ORF1ab/nsp2256T256TacAacC525B.1.617.20.000019
ORF1ab/nsp2256T256TacAacT325B.1.617.20.000011
ORF1ab/nsp2256T256TacAacC1024B.10.000092
ORF1ab/nsp2256T256TacAacG1024B.10.000092
ORF1ab/nsp2256T256TacAacT424B.10.000037
ORF1ab/nsp2256T256SAcATcC1324P.10.000205
ORF1ab/nsp2256T256SAcaTca1024P.10.000158
ORF1ab/nsp2256T256SAcATcT124P.10.000016
ORF1ab/nsp2256T256delACA---2323All0.000004
ORF1ab/nsp2256T256IaCaaTa2323B.1.5710.223301
ORF1ab/nsp2256T256TacAacG2121AY.98.10.001017
ORF1ab/nsp2256T256TacAacG2020AY.250.00012
ORF1ab/nsp2256T256TacAacG1620AY.440.000097
ORF1ab/nsp2256T256TacAacC320AY.440.000018
ORF1ab/nsp2256T256TacAacT120AY.440.000006
ORF1ab/nsp2256T256IaCaaTa2020B.1.1.5190.000794
ORF1ab/nsp2256T256IaCaaTa1919B.1.1.2140.001054
ORF1ab/nsp2256T256FACATTC1819P.10.000284
ORF1ab/nsp2256T256FACATTT119P.10.000016
ORF1ab/nsp2256T256IaCaaTa1818AZ.10.015611
ORF1ab/nsp2256T256IaCaaTa1717B.1.177.350.011748
ORF1ab/nsp2256T256IaCaaTa1616AY.430.000071
ORF1ab/nsp2256T256TacAacG1516B.1.1.2310.04644
ORF1ab/nsp2256T256TacAacC116B.1.1.2310.003096
ORF1ab/nsp2256T256IaCaaTa1515AY.50.00031
ORF1ab/nsp2256T256SAcATcC915P.20.00168
ORF1ab/nsp2256T256SAcaTca515P.20.000933
ORF1ab/nsp2256T256SAcATcT115P.20.000187
ORF1ab/nsp2256T256IaCaaTa1414AY.1030.000087
ORF1ab/nsp2256T256TacAacG1414AY.140.001232
ORF1ab/nsp2256T256TacAacG1313AY.10.005144
ORF1ab/nsp2256T256TacAacG913AY.460.000937
ORF1ab/nsp2256T256TacAacC313AY.460.000312
ORF1ab/nsp2256T256TacAacT113AY.460.000104
ORF1ab/nsp2256T256IaCaaTa1212AY.750.000672
ORF1ab/nsp2256T256IaCaaTa1212AY.770.013529
ORF1ab/nsp2256T256IaCaaTa1111AY.200.000428
ORF1ab/nsp2256T256TacAacG911AY.200.00035
ORF1ab/nsp2256T256TacAacC211AY.200.000078
ORF1ab/nsp2256T256IaCaaTa1111B.1.1.700.003752
ORF1ab/nsp2256T256TacAacG511B.1.20.000044
ORF1ab/nsp2256T256TacAacT311B.1.20.000026
ORF1ab/nsp2256T256TacAacC311B.1.20.000026
ORF1ab/nsp2256T256IaCaaTa1111B.1.5250.001245
ORF1ab/nsp2256T256KaCaaAa910All0.000002
ORF1ab/nsp2256T256del1acAac-610All0.000001
ORF1ab/nsp2256T256PAcaCca610All0.000001
ORF1ab/nsp2256T256PAcACcT410All0.000001
ORF1ab/nsp2256T256del1AcA-cT410All0.000001
ORF1ab/nsp2256T256KaCAaAG110All0
ORF1ab/nsp2256T256IaCaaTa1010AY.290.000158
ORF1ab/nsp2256T256IaCaaTa910B.1.1.280.002801
ORF1ab/nsp2256T256IaCAaTC110B.1.1.280.000311
ORF1ab/nsp2256T256TacAacG79AY.50.000145
ORF1ab/nsp2256T256TacAacC29AY.50.000041
ORF1ab/nsp2256T256IaCaaTa99B.1.1.3720.006198
ORF1ab/nsp2256T256AAcaGca99B.1.1600.000281
ORF1ab/nsp2256T256SAcaTca380.166667
ORF1ab/nsp2256T256SAcATcC380.166667
ORF1ab/nsp2256T256SaCAaGC180.055556
ORF1ab/nsp2256T256SAcATcG180.055556
ORF1ab/nsp2256T256TacAacG88AY.5.40.002214
ORF1ab/nsp2256T256TacAacG68P.1.140.000287
ORF1ab/nsp2256T256TacAacT28P.1.140.000096
ORF1ab/nsp2256T256LACaTTa57All0.000001
ORF1ab/nsp2256T256LACaCTa17All0
ORF1ab/nsp2256T256LACATTG17All0
ORF1ab/nsp2256T256IaCaaTa77AY.1020.000186
ORF1ab/nsp2256T256IaCaaTa77AY.1190.000247
ORF1ab/nsp2256T256TacAacG67AY.30.00006
ORF1ab/nsp2256T256TacAacT17AY.30.00001
ORF1ab/nsp2256T256IaCaaTa77AY.390.000173
ORF1ab/nsp2256T256AAcaGca77B.1.1.70.000006
ORF1ab/nsp2256T256TacAacG77B.1.2340.000924
ORF1ab/nsp2256T256IaCaaTa77B.1.2340.000924
ORF1ab/nsp2256T256IaCaaTa77B.1.4590.028571
ORF1ab/nsp2256T256IaCaaTa77B.1.6210.00062
ORF1ab/nsp2256T256TacAacC57P.20.000933
ORF1ab/nsp2256T256TacAacT27P.20.000373
ORF1ab/nsp2256T256TacAacC360.166667
ORF1ab/nsp2256T256TacAacT260.111111
ORF1ab/nsp2256T256TacAacG160.055556
ORF1ab/nsp2256T256TacAacG66AY.390.000148
ORF1ab/nsp2256T256IaCaaTa66AY.450.00073
ORF1ab/nsp2256T256IaCaaTa66AY.920.001724
ORF1ab/nsp2256T256SAcaTca46B.10.000037
ORF1ab/nsp2256T256SAcATcC26B.10.000018
ORF1ab/nsp2256T256IaCaaTa66B.1.1.3360.1
ORF1ab/nsp2256T256delACA---66B.1.1.70.000005
ORF1ab/nsp2256T256TacAacG56B.1.1770.000066
ORF1ab/nsp2256T256TacAacT16B.1.1770.000013
ORF1ab/nsp2256T256IaCaaTa66B.1.2400.001293
ORF1ab/nsp2256T256IaCaaTa66B.1.2430.000418
ORF1ab/nsp2256T256IaCaaTa55AY.540.000477
ORF1ab/nsp2256T256IaCaaTa55AY.7.20.002796
ORF1ab/nsp2256T256IaCaaTa55AY.9.10.000419
ORF1ab/nsp2256T256IaCaaTa55B.1.1.1760.002197
ORF1ab/nsp2256T256IaCaaTa55B.1.177.860.000917
ORF1ab/nsp2256T256IaCaaTa55B.1.3660.02439
ORF1ab/nsp2256T256TacAacG45B.1.4270.000202
ORF1ab/nsp2256T256TacAacT15B.1.4270.00005
ORF1ab/nsp2256T256IaCaaTa55B.1.5960.000436
ORF1ab/nsp2256T256IaCaaTa55P.1.150.001162
ORF1ab/nsp2256T256FACATTC45P.20.000747
ORF1ab/nsp2256T256FACATTT15P.20.000187
ORF1ab/nsp2256T256TacAacT45Q.30.00058
ORF1ab/nsp2256T256TacAacG15Q.30.000145
ORF1ab/nsp2256T256PAcACcT240.111111
ORF1ab/nsp2256T256PAcaCca240.111111
ORF1ab/nsp2256T256XACaTAa34All0.000001
ORF1ab/nsp2256T256XACaTGa14All0
ORF1ab/nsp2256T256IaCaaTa44AY.1110.000733
ORF1ab/nsp2256T256IaCaaTa44AY.1200.000149
ORF1ab/nsp2256T256delACA---44B.1.1.330.001684
ORF1ab/nsp2256T256del1acAac-24B.1.1.70.000002
ORF1ab/nsp2256T256del1AcA-cT24B.1.1.70.000002
ORF1ab/nsp2256T256TacAacG34B.1.1.700.001023
ORF1ab/nsp2256T256TacAacT14B.1.1.700.000341
ORF1ab/nsp2256T256TacAacG34B.1.1600.000094
ORF1ab/nsp2256T256TacAacT14B.1.1600.000031
ORF1ab/nsp2256T256IaCaaTa44B.1.4270.000202
ORF1ab/nsp2256T256TacAacG34B.1.4290.000071
ORF1ab/nsp2256T256TacAacC14B.1.4290.000024
ORF1ab/nsp2256T256IaCaaTa44B.1.4710.010929
ORF1ab/nsp2256T256IaCaaTa44B.1.5260.000094
ORF1ab/nsp2256T256IaCaaTa44B.1.6090.001918
ORF1ab/nsp2256T256IaCaaTa44B.1.6280.001409
ORF1ab/nsp2256T256SAcaTca24P.70.008734
ORF1ab/nsp2256T256SAcATcC24P.70.008734
ORF1ab/nsp2256T256NaCAaAC33All0.000001
ORF1ab/nsp2256T256TacAacG23AY.1000.000092
ORF1ab/nsp2256T256TacAacT13AY.1000.000046
ORF1ab/nsp2256T256TacAacC23AY.1020.000053
ORF1ab/nsp2256T256TacAacG13AY.1020.000027
ORF1ab/nsp2256T256TacAacG33AY.1180.000188
ORF1ab/nsp2256T256IaCaaTa33AY.230.000209
ORF1ab/nsp2256T256AAcaGca33AY.4.20.000065
ORF1ab/nsp2256T256TacAacG33AY.420.000121
ORF1ab/nsp2256T256TacAacG33AY.470.000093
ORF1ab/nsp2256T256IaCaaTa33AY.75.10.000541
ORF1ab/nsp2256T256IaCaaTa33AY.99.20.000276
ORF1ab/nsp2256T256KaCaaAa23B.10.000018
ORF1ab/nsp2256T256KaCAaAG13B.10.000009
ORF1ab/nsp2256T256IaCaaTa33B.1.1.2770.002276
ORF1ab/nsp2256T256TacAacC23B.1.1.330.000842
ORF1ab/nsp2256T256TacAacT13B.1.1.330.000421
ORF1ab/nsp2256T256delACA---33B.1.1.3480.002389
ORF1ab/nsp2256T256AAcaGca33B.1.1.4290.013825
ORF1ab/nsp2256T256IaCaaTa33B.1.1.4340.001046
ORF1ab/nsp2256T256TacAacG33B.1.1.5190.000119
ORF1ab/nsp2256T256TacAacG33B.1.258.170.000312
ORF1ab/nsp2256T256IaCaaTa33B.1.3510.000089
ORF1ab/nsp2256T256IaCaaTa33B.1.3690.000856
ORF1ab/nsp2256T256TacAacT23B.1.5260.000047
ORF1ab/nsp2256T256TacAacG13B.1.5260.000024
ORF1ab/nsp2256T256IaCaaTa33D.20.000225
ORF1ab/nsp2256T256IaCaaTa13P.20.000187
ORF1ab/nsp2256T256IaCAaTC13P.20.000187
ORF1ab/nsp2256T256IaCAaTT13P.20.000187
ORF1ab/nsp2256T256TacAacC33P.70.0131
ORF1ab/nsp2256T256del1AcA-cT220.111111
ORF1ab/nsp2256T256LACATTG120.055556
ORF1ab/nsp2256T256IaCAaTC120.055556
ORF1ab/nsp2256T256XACaTAa120.055556
ORF1ab/nsp2256T256LACaTTa120.055556
ORF1ab/nsp2256T256RaCaaGa120.055556
ORF1ab/nsp2256T256IaCaaTa120.055556
ORF1ab/nsp2256T256XACaTGa120.055556
ORF1ab/nsp2256T256RaCAaGG120.055556
ORF1ab/nsp2256T256IaCaaTa22A.90.090909
ORF1ab/nsp2256T256del2aCAa--22All0
ORF1ab/nsp2256T256YACATAC22All0
ORF1ab/nsp2256T256MaCAaTG22All0
ORF1ab/nsp2256T256RaCaaGa12All0
ORF1ab/nsp2256T256RaCAaGG12All0
ORF1ab/nsp2256T256IaCaaTa22AY.1000.000092
ORF1ab/nsp2256T256AAcaGca22AY.1210.000271
ORF1ab/nsp2256T256IaCaaTa22AY.1210.000271
ORF1ab/nsp2256T256IaCaaTa22AY.330.000134
ORF1ab/nsp2256T256IaCaaTa22AY.360.000296
ORF1ab/nsp2256T256IaCaaTa22AY.39.10.000079
ORF1ab/nsp2256T256AAcaGca22AY.40.000003
ORF1ab/nsp2256T256TacAacG22AY.4.20.000043
ORF1ab/nsp2256T256IaCaaTa22AY.4.50.000215
ORF1ab/nsp2256T256TacAacC12AY.46.60.000072
ORF1ab/nsp2256T256TacAacT12AY.46.60.000072
ORF1ab/nsp2256T256IaCaaTa22AY.470.000062
ORF1ab/nsp2256T256IaCaaTa22AY.530.000575
ORF1ab/nsp2256T256TacAacG22AY.540.000191
ORF1ab/nsp2256T256IaCaaTa22AY.680.000547
ORF1ab/nsp2256T256TacAacC12AY.7.20.000559
ORF1ab/nsp2256T256TacAacG12AY.7.20.000559
ORF1ab/nsp2256T256IaCaaTa22AY.710.00095
ORF1ab/nsp2256T256TacAacG12AY.9.10.000084
ORF1ab/nsp2256T256TacAacC12AY.9.10.000084
ORF1ab/nsp2256T256IaCaaTa22AY.98.10.000097
ORF1ab/nsp2256T256TacAacC22AY.99.20.000184
ORF1ab/nsp2256T256SAcATcC12AY.99.20.000092
ORF1ab/nsp2256T256SAcaTca12AY.99.20.000092
ORF1ab/nsp2256T256TacAacC22B.1.1.1340.022727
ORF1ab/nsp2256T256IaCaaTa22B.1.1.2160.001781
ORF1ab/nsp2256T256TacAacC22B.1.1.280.000622
ORF1ab/nsp2256T256SAcaTca12B.1.1.280.000311
ORF1ab/nsp2256T256SAcATcC12B.1.1.280.000311
ORF1ab/nsp2256T256IaCaaTa22B.1.1.2840.000215
ORF1ab/nsp2256T256TacAacG22B.1.1.3060.000877
ORF1ab/nsp2256T256TacAacT22B.1.1.3160.00185
ORF1ab/nsp2256T256TacAacG22B.1.1.390.001019
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