CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 254

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2254N254NN434NsynaaCaaT4282428211565-1567
ORF1ab/nsp2254N254DN434DnonsynAacGac18918911565-1567
ORF1ab/nsp2254N254KN434KnonsynaaCaaA1361160.8529411565-1567
ORF1ab/nsp2254N254KN434KnonsynaaCaaG136200.1470591565-1567
ORF1ab/nsp2254N254SN434SnonsynaAcaGc1051020.9714291565-1567
ORF1ab/nsp2254N254SN434SnonsynAACTCA10520.01904761565-1567
ORF1ab/nsp2254N254SN434SnonsynAAcTCc10510.009523811565-1567
ORF1ab/nsp2254N254delN434deldelAAC---252511565-1567
ORF1ab/nsp2254N254TN434TnonsynaAcaCc25150.61565-1567
ORF1ab/nsp2254N254TN434TnonsynaACaCG2560.241565-1567
ORF1ab/nsp2254N254TN434TnonsynaACaCA2540.161565-1567
ORF1ab/nsp2254N254AN434AnonsynAACGCG1140.3636361565-1567
ORF1ab/nsp2254N254AN434AnonsynAAcGCc1140.3636361565-1567
ORF1ab/nsp2254N254AN434AnonsynAACGCA1120.1818181565-1567
ORF1ab/nsp2254N254AN434AnonsynAACGCT1110.09090911565-1567
ORF1ab/nsp2254N254RN434RnonsynaACaGA1050.51565-1567
ORF1ab/nsp2254N254RN434RnonsynaACaGG1020.21565-1567
ORF1ab/nsp2254N254RN434RnonsynAAcCGc1010.11565-1567
ORF1ab/nsp2254N254RN434RnonsynAACCGA1010.11565-1567
ORF1ab/nsp2254N254RN434RnonsynAACCGG1010.11565-1567
ORF1ab/nsp2254N254MN434MnonsynaACaTG9911565-1567
ORF1ab/nsp2254N254IN434InonsynaAcaTc980.8888891565-1567
ORF1ab/nsp2254N254IN434InonsynaACaTA910.1111111565-1567
ORF1ab/nsp2254N254EN434EnonsynAaCGaG860.751565-1567
ORF1ab/nsp2254N254QN434QnonsynAaCCaG850.6251565-1567
ORF1ab/nsp2254N254QN434QnonsynAaCCaA830.3751565-1567
ORF1ab/nsp2254N254EN434EnonsynAaCGaA820.251565-1567
ORF1ab/nsp2254N254YN434YnonsynAacTac6611565-1567
ORF1ab/nsp2254N254XN434XnonsynAaCTaA640.6666671565-1567
ORF1ab/nsp2254N254XN434XnonsynAaCTaG610.1666671565-1567
ORF1ab/nsp2254N254XN434XnonsynAACTGA610.1666671565-1567
ORF1ab/nsp2254N254VN434VnonsynAACGTG530.61565-1567
ORF1ab/nsp2254N254VN434VnonsynAAcGTc520.41565-1567
ORF1ab/nsp2254N254LN434LnonsynAACCTA510.21565-1567
ORF1ab/nsp2254N254LN434LnonsynAACCTG510.21565-1567
ORF1ab/nsp2254N254LN434LnonsynAAcCTc510.21565-1567
ORF1ab/nsp2254N254LN434LnonsynAACTTG510.21565-1567
ORF1ab/nsp2254N254LN434LnonsynAACTTA510.21565-1567
ORF1ab/nsp2254N254PN434PnonsynAACCCA420.51565-1567
ORF1ab/nsp2254N254PN434PnonsynAAcCCc420.51565-1567
ORF1ab/nsp2254N254HN434HnonsynAacCac3311565-1567
ORF1ab/nsp2254N254FN434FnonsynAAcTTc1111565-1567
ORF1ab/nsp2254N254WN434WnonsynAACTGG1111565-1567
ORF1ab/nsp2254N254CN434CnonsynAAcTGc1111565-1567

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2254N254NaaCaaT42824282All0.000819
ORF1ab/nsp2254N254NaaCaaT19431943A.2.50.969561
ORF1ab/nsp2254N254NaaCaaT622622A.2.5.20.977987
ORF1ab/nsp2254N254NaaCaaT275275B.1.1.70.000246
ORF1ab/nsp2254N254NaaCaaT208208A.2.5.11
ORF1ab/nsp2254N254NaaCaaT198198B.1.617.20.000746
ORF1ab/nsp2254N254DAacGac189189All0.000036
ORF1ab/nsp2254N254KaaCaaA116136All0.000022
ORF1ab/nsp2254N254KaaCaaG20136All0.000004
ORF1ab/nsp2254N254NaaCaaT113113B.1.1600.003524
ORF1ab/nsp2254N254SaAcaGc102105All0.00002
ORF1ab/nsp2254N254SAACTCA2105All0
ORF1ab/nsp2254N254SAAcTCc1105All0
ORF1ab/nsp2254N254DAacGac104104AY.40.000162
ORF1ab/nsp2254N254NaaCaaT9696A.2.5.30.989691
ORF1ab/nsp2254N254NaaCaaT5959AY.40.000092
ORF1ab/nsp2254N254NaaCaaT4747AY.200.001827
ORF1ab/nsp2254N254NaaCaaT4747B.1.20.000414
ORF1ab/nsp2254N254KaaCaaA4545AY.1190.001589
ORF1ab/nsp2254N254NaaCaaT4242AY.980.003318
ORF1ab/nsp2254N254NaaCaaT4141B.10.000376
ORF1ab/nsp2254N254NaaCaaT4040AY.250.000241
ORF1ab/nsp2254N254SaAcaGc3535AY.1030.000217
ORF1ab/nsp2254N254NaaCaaT3333AY.1020.000875
ORF1ab/nsp2254N254SaAcaGc3030AY.30.000298
ORF1ab/nsp2254N254NaaCaaT2727AC.11
ORF1ab/nsp2254N254NaaCaaT2626AY.430.000115
ORF1ab/nsp2254N254delAAC---2525All0.000005
ORF1ab/nsp2254N254TaAcaCc1525All0.000003
ORF1ab/nsp2254N254TaACaCG625All0.000001
ORF1ab/nsp2254N254TaACaCA425All0.000001
ORF1ab/nsp2254N254NaaCaaT2222B.1.1.5190.000874
ORF1ab/nsp2254N254NaaCaaT1818AY.50.000372
ORF1ab/nsp2254N254NaaCaaT1515AY.1030.000093
ORF1ab/nsp2254N254SaAcaGc1415B.1.1.70.000013
ORF1ab/nsp2254N254SAAcTCc115B.1.1.70.000001
ORF1ab/nsp2254N254DAacGac1515B.1.2210.001065
ORF1ab/nsp2254N254NaaCaaT1515B.1.5170.006405
ORF1ab/nsp2254N254NaaCaaT1414P.1.140.000669
ORF1ab/nsp2254N254NaaCaaT1313B.1.5260.000306
ORF1ab/nsp2254N254AAACGCG411All0.000001
ORF1ab/nsp2254N254AAAcGCc411All0.000001
ORF1ab/nsp2254N254AAACGCA211All0
ORF1ab/nsp2254N254AAACGCT111All0
ORF1ab/nsp2254N254NaaCaaT1111AY.440.000067
ORF1ab/nsp2254N254NaaCaaT1111AY.990.011542
ORF1ab/nsp2254N254NaaCaaT1111B.1.10.0002
ORF1ab/nsp2254N254TaAcaCc611P.10.000095
ORF1ab/nsp2254N254TaACaCG511P.10.000079
ORF1ab/nsp2254N254RaACaGA510All0.000001
ORF1ab/nsp2254N254RaACaGG210All0
ORF1ab/nsp2254N254RAAcCGc110All0
ORF1ab/nsp2254N254RAACCGG110All0
ORF1ab/nsp2254N254RAACCGA110All0
ORF1ab/nsp2254N254KaaCaaA1010AY.1030.000062
ORF1ab/nsp2254N254NaaCaaT1010AY.30.000099
ORF1ab/nsp2254N254NaaCaaT1010AY.390.000247
ORF1ab/nsp2254N254NaaCaaT1010AY.98.10.000484
ORF1ab/nsp2254N254NaaCaaT1010B.1.1770.000132
ORF1ab/nsp2254N254NaaCaaT1010B.1.5990.036496
ORF1ab/nsp2254N254NaaCaaT1010B.1.6210.000885
ORF1ab/nsp2254N254KaaCaaG1010P.10.000158
ORF1ab/nsp2254N254MaACaTG99All0.000002
ORF1ab/nsp2254N254IaAcaTc89All0.000002
ORF1ab/nsp2254N254IaACaTA19All0
ORF1ab/nsp2254N254DAacGac99B.10.000082
ORF1ab/nsp2254N254NaaCaaT99B.1.1.4050.75
ORF1ab/nsp2254N254KaaCaaA99B.1.1.70.000008
ORF1ab/nsp2254N254KaaCaaA99B.1.2580.000599
ORF1ab/nsp2254N254NaaCaaT99B.1.4290.000212
ORF1ab/nsp2254N254DAacGac99B.1.5250.001018
ORF1ab/nsp2254N254NaaCaaT99P.10.000142
ORF1ab/nsp2254N254EAaCGaG68All0.000001
ORF1ab/nsp2254N254QAaCCaG58All0.000001
ORF1ab/nsp2254N254QAaCCaA38All0.000001
ORF1ab/nsp2254N254EAaCGaA28All0
ORF1ab/nsp2254N254NaaCaaT88B.1.1.3660.126984
ORF1ab/nsp2254N254NaaCaaT88B.1.214.30.057143
ORF1ab/nsp2254N254NaaCaaT77AY.450.000852
ORF1ab/nsp2254N254AAACGCG37P.10.000047
ORF1ab/nsp2254N254AAAcGCc37P.10.000047
ORF1ab/nsp2254N254AAACGCT17P.10.000016
ORF1ab/nsp2254N254KaaCaaA560.277778
ORF1ab/nsp2254N254QAaCCaG360.166667
ORF1ab/nsp2254N254TaACaCA360.166667
ORF1ab/nsp2254N254TaAcaCc360.166667
ORF1ab/nsp2254N254QAaCCaA360.166667
ORF1ab/nsp2254N254RaACaGA260.111111
ORF1ab/nsp2254N254RAAcCGc160.055556
ORF1ab/nsp2254N254RAACCGA160.055556
ORF1ab/nsp2254N254RAACCGG160.055556
ORF1ab/nsp2254N254KaaCaaG160.055556
ORF1ab/nsp2254N254RaACaGG160.055556
ORF1ab/nsp2254N254YAacTac66All0.000001
ORF1ab/nsp2254N254XAaCTaA46All0.000001
ORF1ab/nsp2254N254XAaCTaG16All0
ORF1ab/nsp2254N254XAACTGA16All0
ORF1ab/nsp2254N254NaaCaaT66AY.1070.002796
ORF1ab/nsp2254N254NaaCaaT66AY.290.000095
ORF1ab/nsp2254N254NaaCaaT66AY.4.20.00013
ORF1ab/nsp2254N254NaaCaaT66AY.470.000187
ORF1ab/nsp2254N254KaaCaaA56B.10.000046
ORF1ab/nsp2254N254KaaCaaG16B.10.000009
ORF1ab/nsp2254N254delAAC---66B.1.1.70.000005
ORF1ab/nsp2254N254NaaCaaT66B.1.4090.004687
ORF1ab/nsp2254N254NaaCaaT66B.1.5820.002944
ORF1ab/nsp2254N254DAacGac66B.1.617.20.000023
ORF1ab/nsp2254N254KaaCaaA56B.1.617.20.000019
ORF1ab/nsp2254N254KaaCaaG16B.1.617.20.000004
ORF1ab/nsp2254N254XAaCTaA350.166667
ORF1ab/nsp2254N254LAACCTA150.055556
ORF1ab/nsp2254N254XAaCTaG150.055556
ORF1ab/nsp2254N254LAACTTG150.055556
ORF1ab/nsp2254N254LAAcCTc150.055556
ORF1ab/nsp2254N254LAACCTG150.055556
ORF1ab/nsp2254N254LAACTTA150.055556
ORF1ab/nsp2254N254XAACTGA150.055556
ORF1ab/nsp2254N254VAACGTG35All0.000001
ORF1ab/nsp2254N254VAAcGTc25All0
ORF1ab/nsp2254N254LAACTTG15All0
ORF1ab/nsp2254N254LAACCTA15All0
ORF1ab/nsp2254N254LAAcCTc15All0
ORF1ab/nsp2254N254LAACCTG15All0
ORF1ab/nsp2254N254LAACTTA15All0
ORF1ab/nsp2254N254NaaCaaT55AY.1210.000677
ORF1ab/nsp2254N254KaaCaaA55AY.40.000008
ORF1ab/nsp2254N254NaaCaaT55AY.920.001436
ORF1ab/nsp2254N254NaaCaaT55AZ.20.004105
ORF1ab/nsp2254N254NaaCaaT55B.1.3510.000149
ORF1ab/nsp2254N254NaaCaaT55B.1.36.290.002587
ORF1ab/nsp2254N254NaaCaaT55B.1.5950.001305
ORF1ab/nsp2254N254MaACaTG55P.10.000079
ORF1ab/nsp2254N254SAACTCA240.111111
ORF1ab/nsp2254N254PAACCCA240.111111
ORF1ab/nsp2254N254SaAcaGc240.111111
ORF1ab/nsp2254N254PAAcCCc240.111111
ORF1ab/nsp2254N254PAACCCA24All0
ORF1ab/nsp2254N254PAAcCCc24All0
ORF1ab/nsp2254N254DAacGac44AY.1030.000025
ORF1ab/nsp2254N254KaaCaaA44AY.290.000063
ORF1ab/nsp2254N254NaaCaaT44AY.39.10.000158
ORF1ab/nsp2254N254NaaCaaT44AY.9.10.000335
ORF1ab/nsp2254N254delAAC---44B.1.1.330.001684
ORF1ab/nsp2254N254NaaCaaT44B.1.2430.000278
ORF1ab/nsp2254N254NaaCaaT44C.370.000464
ORF1ab/nsp2254N254NaaCaaT44D.20.0003
ORF1ab/nsp2254N254KaaCaaG44P.20.000747
ORF1ab/nsp2254N254TaAcaCc34P.20.00056
ORF1ab/nsp2254N254TaACaCG14P.20.000187
ORF1ab/nsp2254N254NaaCaaT44Z.10.011561
ORF1ab/nsp2254N254HAacCac330.166667
ORF1ab/nsp2254N254NaaCaaT33A.60.015385
ORF1ab/nsp2254N254HAacCac33All0.000001
ORF1ab/nsp2254N254NaaCaaT33AY.190.003421
ORF1ab/nsp2254N254DAacGac33AY.200.000117
ORF1ab/nsp2254N254NaaCaaT33AY.230.000209
ORF1ab/nsp2254N254DAacGac33AY.230.000209
ORF1ab/nsp2254N254NaaCaaT33AY.23.10.001252
ORF1ab/nsp2254N254KaaCaaA33AY.250.000018
ORF1ab/nsp2254N254DAacGac33AY.250.000018
ORF1ab/nsp2254N254KaaCaaA33AY.440.000018
ORF1ab/nsp2254N254NaaCaaT33AY.60.000123
ORF1ab/nsp2254N254DAacGac33AY.750.000168
ORF1ab/nsp2254N254NaaCaaT33B0.000383
ORF1ab/nsp2254N254SaAcaGc33B.1.10.000054
ORF1ab/nsp2254N254NaaCaaT33B.1.1.3220.026316
ORF1ab/nsp2254N254delAAC---33B.1.1.3480.002389
ORF1ab/nsp2254N254NaaCaaT33B.1.4700.004213
ORF1ab/nsp2254N254NaaCaaT33B.1.5750.00091
ORF1ab/nsp2254N254NaaCaaT33B.1.596.10.028037
ORF1ab/nsp2254N254DAacGac33P.10.000047
ORF1ab/nsp2254N254EAaCGaG33P.10.000047
ORF1ab/nsp2254N254IaAcaTc33P.20.00056
ORF1ab/nsp2254N254EAaCGaA220.111111
ORF1ab/nsp2254N254AAACGCA220.111111
ORF1ab/nsp2254N254IaACaTA120.055556
ORF1ab/nsp2254N254IaAcaTc120.055556
ORF1ab/nsp2254N254NaaCaaT22AY.1170.000169
ORF1ab/nsp2254N254NaaCaaT22AY.1180.000125
ORF1ab/nsp2254N254NaaCaaT22AY.160.000759
ORF1ab/nsp2254N254SaAcaGc22AY.250.000012
ORF1ab/nsp2254N254NaaCaaT22AY.260.000057
ORF1ab/nsp2254N254DAacGac22AY.30.00002
ORF1ab/nsp2254N254SaAcaGc22AY.40.000003
ORF1ab/nsp2254N254NaaCaaT22AY.4.50.000215
ORF1ab/nsp2254N254NaaCaaT22AY.420.00008
ORF1ab/nsp2254N254DAacGac22AY.420.00008
ORF1ab/nsp2254N254DAacGac22AY.430.000009
ORF1ab/nsp2254N254NaaCaaT22AY.46.40.000329
ORF1ab/nsp2254N254NaaCaaT22AY.650.001066
ORF1ab/nsp2254N254NaaCaaT22AY.750.000112
ORF1ab/nsp2254N254NaaCaaT22AY.90.000135
ORF1ab/nsp2254N254NaaCaaT22AY.950.001522
ORF1ab/nsp2254N254NaaCaaT22AY.99.20.000184
ORF1ab/nsp2254N254DAacGac22B0.000256
ORF1ab/nsp2254N254YAacTac22B.10.000018
ORF1ab/nsp2254N254NaaCaaT22B.1.1.2840.000215
ORF1ab/nsp2254N254KaaCaaA22B.1.1.3050.007722
ORF1ab/nsp2254N254NaaCaaT22B.1.1.370.000386
ORF1ab/nsp2254N254DAacGac22B.1.1.70.000002
ORF1ab/nsp2254N254QAaCCaG22B.1.1.70.000002
ORF1ab/nsp2254N254TaAcaCc12B.1.1.70.000001
ORF1ab/nsp2254N254TaACaCA12B.1.1.70.000001
ORF1ab/nsp2254N254NaaCaaT22B.1.1570.00597
ORF1ab/nsp2254N254NaaCaaT22B.1.177.320.002699
ORF1ab/nsp2254N254NaaCaaT22B.1.2390.002442
ORF1ab/nsp2254N254NaaCaaT22B.1.2580.000133
ORF1ab/nsp2254N254NaaCaaT22B.1.351.20.000605
ORF1ab/nsp2254N254NaaCaaT22B.1.3960.001411
ORF1ab/nsp2254N254KaaCaaA22B.1.4290.000047
ORF1ab/nsp2254N254NaaCaaT22B.1.4730.038462
ORF1ab/nsp2254N254NaaCaaT22B.1.5600.009259
ORF1ab/nsp2254N254delAAC---22N.60.014184
ORF1ab/nsp2254N254EAaCGaG22P.20.000373
ORF1ab/nsp2254N254delAAC---22P.20.000373
ORF1ab/nsp2254N254AAACGCG12P.20.000187
ORF1ab/nsp2254N254AAAcGCc12P.20.000187
ORF1ab/nsp2254N254VAACGTG12P.20.000187
ORF1ab/nsp2254N254VAAcGTc12P.20.000187
ORF1ab/nsp2254N254IaAcaTc22P.70.008734
ORF1ab/nsp2254N254VAAcGTc12P.70.004367
ORF1ab/nsp2254N254VAACGTG12P.70.004367
ORF1ab/nsp2254N254NaaCaaT22Q.80.00033
ORF1ab/nsp2254N254YAacTac110.055556
ORF1ab/nsp2254N254MaACaTG110.055556
ORF1ab/nsp2254N254CAAcTGc110.055556
ORF1ab/nsp2254N254WAACTGG110.055556
ORF1ab/nsp2254N254FAAcTTc110.055556
ORF1ab/nsp2254N254TaAcaCc11A0.000387
ORF1ab/nsp2254N254NaaCaaT11A0.000387
ORF1ab/nsp2254N254RaACaGA11A.10.000282
ORF1ab/nsp2254N254NaaCaaT11A.10.000282
ORF1ab/nsp2254N254NaaCaaT11A.20.000662
ORF1ab/nsp2254N254NaaCaaT11A.2.40.003367
ORF1ab/nsp2254N254NaaCaaT11AE.80.000489
ORF1ab/nsp2254N254WAACTGG11All0
ORF1ab/nsp2254N254FAAcTTc11All0
ORF1ab/nsp2254N254CAAcTGc11All0
ORF1ab/nsp2254N254NaaCaaT11AY.1000.000046
ORF1ab/nsp2254N254DAacGac11AY.1070.000466
ORF1ab/nsp2254N254NaaCaaT11AY.1110.000183
ORF1ab/nsp2254N254NaaCaaT11AY.1130.000142
ORF1ab/nsp2254N254DAacGac11AY.1170.000085
ORF1ab/nsp2254N254SaAcaGc11AY.1180.000063
ORF1ab/nsp2254N254YAacTac11AY.1190.000035
ORF1ab/nsp2254N254NaaCaaT11AY.120.000316
ORF1ab/nsp2254N254delAAC---11AY.1200.000037
ORF1ab/nsp2254N254NaaCaaT11AY.120.2.10.000498
ORF1ab/nsp2254N254NaaCaaT11AY.140.000088
ORF1ab/nsp2254N254DAacGac11AY.160.00038
ORF1ab/nsp2254N254NaaCaaT11AY.16.10.00047
ORF1ab/nsp2254N254KaaCaaA11AY.210.001898
ORF1ab/nsp2254N254NaaCaaT11AY.330.000067
ORF1ab/nsp2254N254NaaCaaT11AY.340.000097
ORF1ab/nsp2254N254NaaCaaT11AY.34.10.00051
ORF1ab/nsp2254N254SaAcaGc11AY.390.000025
ORF1ab/nsp2254N254RaACaGA11AY.4.2.10.000149
ORF1ab/nsp2254N254NaaCaaT11AY.4.40.000409
ORF1ab/nsp2254N254delAAC---11AY.4.50.000107
ORF1ab/nsp2254N254SaAcaGc11AY.440.000006
ORF1ab/nsp2254N254DAacGac11AY.460.000104
ORF1ab/nsp2254N254NaaCaaT11AY.46.20.000635
ORF1ab/nsp2254N254NaaCaaT11AY.46.60.000072
ORF1ab/nsp2254N254DAacGac11AY.470.000031
ORF1ab/nsp2254N254NaaCaaT11AY.5.40.000277
ORF1ab/nsp2254N254KaaCaaA11AY.550.000917
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