CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 251 | I251M | I431M | nonsyn | atA | atG | 4138 | 4138 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251V | I431V | nonsyn | Ata | Gta | 171 | 170 | 0.994152 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251V | I431V | nonsyn | AtA | GtT | 171 | 1 | 0.00584795 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251T | I431T | nonsyn | aTa | aCa | 106 | 102 | 0.962264 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251T | I431T | nonsyn | aTA | aCG | 106 | 2 | 0.0188679 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251T | I431T | nonsyn | aTA | aCT | 106 | 1 | 0.00943396 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251T | I431T | nonsyn | aTA | aCC | 106 | 1 | 0.00943396 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251L | I431L | nonsyn | Ata | Tta | 66 | 34 | 0.515152 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251L | I431L | nonsyn | Ata | Cta | 66 | 30 | 0.454545 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251L | I431L | nonsyn | AtA | TtG | 66 | 1 | 0.0151515 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251L | I431L | nonsyn | AtA | CtT | 66 | 1 | 0.0151515 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251I | I431I | syn | atA | atT | 39 | 28 | 0.717949 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251I | I431I | syn | atA | atC | 39 | 11 | 0.282051 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251del | I431del | del | ATA | --- | 28 | 28 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251K | I431K | nonsyn | aTa | aAa | 15 | 15 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251F | I431F | nonsyn | AtA | TtC | 12 | 9 | 0.75 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251F | I431F | nonsyn | AtA | TtT | 12 | 3 | 0.25 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251S | I431S | nonsyn | ATa | TCa | 9 | 4 | 0.444444 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251S | I431S | nonsyn | ATA | TCG | 9 | 2 | 0.222222 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251S | I431S | nonsyn | ATA | TCC | 9 | 1 | 0.111111 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251S | I431S | nonsyn | aTA | aGT | 9 | 1 | 0.111111 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251S | I431S | nonsyn | ATA | TCT | 9 | 1 | 0.111111 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251A | I431A | nonsyn | ATa | GCa | 8 | 5 | 0.625 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251A | I431A | nonsyn | ATA | GCG | 8 | 2 | 0.25 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251A | I431A | nonsyn | ATA | GCT | 8 | 1 | 0.125 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251X | I431X | nonsyn | ATa | TAa | 6 | 3 | 0.5 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251X | I431X | nonsyn | ATA | TAG | 6 | 2 | 0.333333 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251X | I431X | nonsyn | ATa | TGa | 6 | 1 | 0.166667 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251E | I431E | nonsyn | ATa | GAa | 4 | 2 | 0.5 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251E | I431E | nonsyn | ATA | GAG | 4 | 2 | 0.5 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251Q | I431Q | nonsyn | ATa | CAa | 3 | 3 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251del1 | I431del1 | del | atA | at- | 2 | 2 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251N | I431N | nonsyn | aTA | aAC | 2 | 2 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251G | I431G | nonsyn | ATA | GGT | 2 | 1 | 0.5 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251G | I431G | nonsyn | ATa | GGa | 2 | 1 | 0.5 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251C | I431C | nonsyn | ATA | TGT | 1 | 1 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251R | I431R | nonsyn | aTa | aGa | 1 | 1 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251H | I431H | nonsyn | ATA | CAT | 1 | 1 | 1 | 1556-1558 |
ORF1ab/nsp2 | 251 | I251del2 | I431del2 | del | ATa | --a | 1 | 1 | 1 | 1556-1558 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4138 | 4138 | All | 0.000791 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1252 | 1252 | B.1.617.2 | 0.004714 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 590 | 590 | AY.40 | 0.568949 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 323 | 323 | AY.4 | 0.000503 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 287 | 287 | B.1.177 | 0.003779 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 275 | 275 | B.1.1.7 | 0.000246 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 256 | 256 | AY.46 | 0.026644 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 170 | 171 | All | 0.000033 |
ORF1ab/nsp2 | 251 | I251V | AtA | GtT | 1 | 171 | All | 0 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 102 | 106 | All | 0.00002 |
ORF1ab/nsp2 | 251 | I251T | aTA | aCG | 2 | 106 | All | 0 |
ORF1ab/nsp2 | 251 | I251T | aTA | aCC | 1 | 106 | All | 0 |
ORF1ab/nsp2 | 251 | I251T | aTA | aCT | 1 | 106 | All | 0 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 88 | 88 | B.1.1.222 | 0.017952 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 68 | 68 | B.1.177.4 | 0.014352 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 34 | 66 | All | 0.000007 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 30 | 66 | All | 0.000006 |
ORF1ab/nsp2 | 251 | I251L | AtA | TtG | 1 | 66 | All | 0 |
ORF1ab/nsp2 | 251 | I251L | AtA | CtT | 1 | 66 | All | 0 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 66 | 66 | B.1.243 | 0.004593 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 55 | 55 | B.1.438 | 0.359477 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 53 | 53 | AY.62 | 0.023094 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 48 | 48 | AY.60 | 0.045028 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 47 | 47 | B.1 | 0.00043 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 46 | 46 | AY.29 | 0.000726 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 28 | 39 | All | 0.000005 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 11 | 39 | All | 0.000002 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 37 | 38 | B.1.1.7 | 0.000033 |
ORF1ab/nsp2 | 251 | I251T | aTA | aCG | 1 | 38 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 33 | 33 | P.1.15 | 0.007667 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 32 | 32 | P.1 | 0.000504 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 29 | 29 | B.1.1.33 | 0.012205 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 29 | 29 | B.1.1.435 | 1 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 29 | 29 | P.2 | 0.005412 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 28 | 28 | All | 0.000005 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 24 | 24 | AY.16.1 | 0.011278 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 22 | 22 | B.1.241 | 0.017857 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 21 | 21 | AY.59 | 0.011123 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 19 | 19 | B.1.177.34 | 1 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 16 | 16 | AY.5.2 | 0.039409 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 16 | 16 | B.1.36 | 0.002334 |
ORF1ab/nsp2 | 251 | I251K | aTa | aAa | 15 | 15 | All | 0.000003 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 15 | 15 | B.1.1.348 | 0.011943 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 13 | 13 | AY.36 | 0.001927 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 13 | 13 | C.37 | 0.001509 |
ORF1ab/nsp2 | 251 | I251F | AtA | TtC | 9 | 12 | All | 0.000002 |
ORF1ab/nsp2 | 251 | I251F | AtA | TtT | 3 | 12 | All | 0.000001 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 12 | 12 | AY.39 | 0.000297 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 12 | 12 | B.1.427 | 0.000606 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 9 | 9 | A.23.1 | 0.006338 |
ORF1ab/nsp2 | 251 | I251S | ATa | TCa | 4 | 9 | All | 0.000001 |
ORF1ab/nsp2 | 251 | I251S | ATA | TCG | 2 | 9 | All | 0 |
ORF1ab/nsp2 | 251 | I251S | aTA | aGT | 1 | 9 | All | 0 |
ORF1ab/nsp2 | 251 | I251S | ATA | TCC | 1 | 9 | All | 0 |
ORF1ab/nsp2 | 251 | I251S | ATA | TCT | 1 | 9 | All | 0 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp2 | 251 | I251K | aTa | aAa | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp2 | 251 | I251A | ATa | GCa | 5 | 8 | 0.277778 | |
ORF1ab/nsp2 | 251 | I251A | ATA | GCG | 2 | 8 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251A | ATA | GCT | 1 | 8 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251A | ATa | GCa | 5 | 8 | All | 0.000001 |
ORF1ab/nsp2 | 251 | I251A | ATA | GCG | 2 | 8 | All | 0 |
ORF1ab/nsp2 | 251 | I251A | ATA | GCT | 1 | 8 | All | 0 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 7 | 8 | P.1 | 0.00011 |
ORF1ab/nsp2 | 251 | I251T | aTA | aCG | 1 | 8 | P.1 | 0.000016 |
ORF1ab/nsp2 | 251 | I251S | ATa | TCa | 3 | 7 | 0.166667 | |
ORF1ab/nsp2 | 251 | I251S | ATA | TCG | 2 | 7 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251S | aTA | aGT | 1 | 7 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251S | ATA | TCT | 1 | 7 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | AY.86 | 0.005809 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 7 | 7 | B.1.1.138 | 0.042424 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 7 | 7 | B.6.8 | 0.057851 |
ORF1ab/nsp2 | 251 | I251F | AtA | TtC | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp2 | 251 | I251X | ATa | TAa | 3 | 6 | 0.166667 | |
ORF1ab/nsp2 | 251 | I251X | ATA | TAG | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251X | ATa | TGa | 1 | 6 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251X | ATa | TAa | 3 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 251 | I251X | ATA | TAG | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 251 | I251X | ATa | TGa | 1 | 6 | All | 0 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 3 | 5 | 0.166667 | |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 2 | 5 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 3 | 5 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 2 | 5 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 251 | I251L | AtA | CtT | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 3 | 4 | 0.166667 | |
ORF1ab/nsp2 | 251 | I251E | ATa | GAa | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251E | ATA | GAG | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251T | aTA | aCT | 1 | 4 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251E | ATa | GAa | 2 | 4 | All | 0 |
ORF1ab/nsp2 | 251 | I251E | ATA | GAG | 2 | 4 | All | 0 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.232 | 0.00726 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 4 | 4 | B.1.1.311 | 0.001433 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.388 | 0.181818 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 251 | I251Q | ATa | CAa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.1.326 | 0.005282 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.1.53 | 0.041096 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.177.82 | 0.001432 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 251 | I251K | aTa | aAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251Q | ATa | CAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251G | ATa | GGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251G | ATA | GGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251V | AtA | GtT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp2 | 251 | I251del1 | atA | at- | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 251 | I251N | aTA | aAC | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 251 | I251G | ATa | GGa | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 251 | I251G | ATA | GGT | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 2 | 2 | B.1.108 | 0.011628 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.177.3 | 0.015267 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.377 | 0.009132 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.1.78 | 0.017094 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 251 | I251S | ATA | TCC | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp2 | 251 | I251S | ATa | TCa | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp2 | 251 | I251T | aTA | aCC | 1 | 2 | P.2 | 0.000187 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251R | aTa | aGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251C | ATA | TGT | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251F | AtA | TtT | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | A.9 | 0.045455 |
ORF1ab/nsp2 | 251 | I251R | aTa | aGa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 251 | I251C | ATA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 251 | I251H | ATA | CAT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 251 | I251del2 | ATa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 251 | I251F | AtA | TtT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 251 | I251L | AtA | TtG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 251 | I251H | ATA | CAT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 251 | I251K | aTa | aAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 251 | I251del1 | atA | at- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 251 | I251K | aTa | aAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.400 | 0.05 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 251 | I251Q | ATa | CAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 251 | I251F | AtA | TtT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 251 | I251del1 | atA | at- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 251 | I251N | aTA | aAC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 1 | 1 | B.1.167 | 0.007812 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 251 | I251L | Ata | Cta | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp2 | 251 | I251K | aTa | aAa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 251 | I251T | aTa | aCa | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 251 | I251N | aTA | aAC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 251 | I251K | aTa | aAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 251 | I251V | Ata | Gta | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | C.30.1 | 0.006711 |
ORF1ab/nsp2 | 251 | I251I | atA | atT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 251 | I251del2 | ATa | --a | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp2 | 251 | I251F | AtA | TtC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 251 | I251F | AtA | TtC | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp2 | 251 | I251L | Ata | Tta | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp2 | 251 | I251I | atA | atC | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp2 | 251 | I251del | ATA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 251 | I251M | atA | atG | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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