CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 248

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2248S248RS428RnonsynAgcCgc225121450.952911547-1549
ORF1ab/nsp2248S248RS428RnonsynagCagA22511020.04531321547-1549
ORF1ab/nsp2248S248RS428RnonsynagCagG225140.001776991547-1549
ORF1ab/nsp2248S248GS428GnonsynAgcGgc177717740.9983121547-1549
ORF1ab/nsp2248S248GS428GnonsynAgCGgT177720.001125491547-1549
ORF1ab/nsp2248S248GS428GnonsynAgCGgA177710.0005627461547-1549
ORF1ab/nsp2248S248SS428SsynagCagT136213600.9985321547-1549
ORF1ab/nsp2248S248SS428SsynAGcTCc136210.0007342141547-1549
ORF1ab/nsp2248S248SS428SsynAGCTCT136210.0007342141547-1549
ORF1ab/nsp2248S248IS428InonsynaGcaTc6066040.99671547-1549
ORF1ab/nsp2248S248IS428InonsynaGCaTT60620.003300331547-1549
ORF1ab/nsp2248S248NS428NnonsynaGcaAc48648611547-1549
ORF1ab/nsp2248S248CS428CnonsynAgcTgc1031020.9902911547-1549
ORF1ab/nsp2248S248CS428CnonsynAgCTgT10310.009708741547-1549
ORF1ab/nsp2248S248delS428deldelAGC---303011547-1549
ORF1ab/nsp2248S248TS428TnonsynaGcaCc1090.91547-1549
ORF1ab/nsp2248S248TS428TnonsynaGCaCT1010.11547-1549
ORF1ab/nsp2248S248del1S428del1delAgc-gc530.61547-1549
ORF1ab/nsp2248S248del1S428del1delaGca-c520.41547-1549
ORF1ab/nsp2248S248FS428FnonsynAGcTTc2211547-1549
ORF1ab/nsp2248S248VS428VnonsynAGCGTT2211547-1549
ORF1ab/nsp2248S248KS428KnonsynaGCaAG2211547-1549
ORF1ab/nsp2248S248WS428WnonsynAgCTgG2211547-1549
ORF1ab/nsp2248S248ES428EnonsynAGCGAA1111547-1549
ORF1ab/nsp2248S248MS428MnonsynaGCaTG1111547-1549
ORF1ab/nsp2248S248LS428LnonsynAGCTTG1111547-1549
ORF1ab/nsp2248S248YS428YnonsynAGcTAc1111547-1549
ORF1ab/nsp2248S248XS428XnonsynAGCTAG1111547-1549

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2248S248RAgcCgc21452251All0.00041
ORF1ab/nsp2248S248RagCagA1022251All0.00002
ORF1ab/nsp2248S248RagCagG42251All0.000001
ORF1ab/nsp2248S248GAgcGgc17741777All0.000339
ORF1ab/nsp2248S248GAgCGgT21777All0
ORF1ab/nsp2248S248GAgCGgA11777All0
ORF1ab/nsp2248S248SagCagT13601362All0.00026
ORF1ab/nsp2248S248SAGcTCc11362All0
ORF1ab/nsp2248S248SAGCTCT11362All0
ORF1ab/nsp2248S248RAgcCgc642647B.1.1.70.000575
ORF1ab/nsp2248S248RagCagA5647B.1.1.70.000004
ORF1ab/nsp2248S248IaGcaTc604606All0.000116
ORF1ab/nsp2248S248IaGCaTT2606All0
ORF1ab/nsp2248S248IaGcaTc512512AY.430.002268
ORF1ab/nsp2248S248NaGcaAc486486All0.000093
ORF1ab/nsp2248S248GAgcGgc406406B.1.1.2070.479905
ORF1ab/nsp2248S248RAgcCgc337338AY.430.001493
ORF1ab/nsp2248S248RagCagA1338AY.430.000004
ORF1ab/nsp2248S248RAgcCgc293296B.1.617.20.001103
ORF1ab/nsp2248S248RagCagA3296B.1.617.20.000011
ORF1ab/nsp2248S248GAgcGgc251251B.1.1.70.000225
ORF1ab/nsp2248S248SagCagT223223B.1.1.70.0002
ORF1ab/nsp2248S248SagCagT202202AY.40.000314
ORF1ab/nsp2248S248GAgcGgc190190B.1.20.001673
ORF1ab/nsp2248S248NaGcaAc141141B.1.1.70.000126
ORF1ab/nsp2248S248SagCagT131131B.1.617.20.000493
ORF1ab/nsp2248S248RAgcCgc112112AY.75.10.020195
ORF1ab/nsp2248S248CAgcTgc102103All0.00002
ORF1ab/nsp2248S248CAgCTgT1103All0
ORF1ab/nsp2248S248SagCagT102102AY.440.000621
ORF1ab/nsp2248S248RAgcCgc101101AY.4.50.010857
ORF1ab/nsp2248S248RAgcCgc9596AY.40.000148
ORF1ab/nsp2248S248RagCagA196AY.40.000002
ORF1ab/nsp2248S248GAgcGgc8282AY.40.000128
ORF1ab/nsp2248S248NaGcaAc7474B.1.6220.961039
ORF1ab/nsp2248S248GAgcGgc6465P.10.001008
ORF1ab/nsp2248S248GAgCGgA165P.10.000016
ORF1ab/nsp2248S248SagCagT6262B.1.20.000546
ORF1ab/nsp2248S248GAgcGgc6161B.10.000559
ORF1ab/nsp2248S248GAgcGgc5454AY.440.000329
ORF1ab/nsp2248S248NaGcaAc5454B.10.000495
ORF1ab/nsp2248S248GAgcGgc5454B.1.1820.391304
ORF1ab/nsp2248S248GAgcGgc4949AY.1030.000304
ORF1ab/nsp2248S248RAgcCgc4949AY.46.60.003538
ORF1ab/nsp2248S248RAgcCgc4848AY.98.10.002325
ORF1ab/nsp2248S248SagCagT4545AY.1170.003803
ORF1ab/nsp2248S248RAgcCgc4242AY.410.012346
ORF1ab/nsp2248S248RagCagA4242B.1.20.00037
ORF1ab/nsp2248S248RAgcCgc4040B.1.258.170.004159
ORF1ab/nsp2248S248SagCagT3939AY.430.000173
ORF1ab/nsp2248S248RAgcCgc3636AY.9.10.003014
ORF1ab/nsp2248S248SagCagT3636B.1.221.30.03
ORF1ab/nsp2248S248IaGcaTc3535AY.470.001089
ORF1ab/nsp2248S248RAgcCgc3434AY.50.000702
ORF1ab/nsp2248S248SagCagT3333B.1.1770.000435
ORF1ab/nsp2248S248SagCagT3131B.10.000284
ORF1ab/nsp2248S248delAGC---3030All0.000006
ORF1ab/nsp2248S248RAgcCgc3030Q.10.00379
ORF1ab/nsp2248S248GAgcGgc2727AY.250.000162
ORF1ab/nsp2248S248RAgcCgc2525B.10.000229
ORF1ab/nsp2248S248SagCagT2424P.10.000378
ORF1ab/nsp2248S248RAgcCgc2323AY.420.000925
ORF1ab/nsp2248S248GAgcGgc2323B.1.617.20.000087
ORF1ab/nsp2248S248SagCagT2222AY.420.000885
ORF1ab/nsp2248S248SagCagT2222AY.980.001738
ORF1ab/nsp2248S248GAgcGgc2121B.1.2320.011284
ORF1ab/nsp2248S248GAgcGgc2020B.1.10.000363
ORF1ab/nsp2248S248CAgcTgc1919B.1.10.000345
ORF1ab/nsp2248S248GAgcGgc1919B.1.177.160.012625
ORF1ab/nsp2248S248SagCagT1818AY.1030.000112
ORF1ab/nsp2248S248CAgcTgc1818B.1.1.590.116883
ORF1ab/nsp2248S248SagCagT1818B.1.4290.000424
ORF1ab/nsp2248S248CAgcTgc1717B.1.1.70.000015
ORF1ab/nsp2248S248GAgcGgc1717B.1.1770.000224
ORF1ab/nsp2248S248RagCagA1217B.1.3510.000357
ORF1ab/nsp2248S248RAgcCgc517B.1.3510.000149
ORF1ab/nsp2248S248GAgcGgc1616A.10.00451
ORF1ab/nsp2248S248SagCagT1616AY.230.001116
ORF1ab/nsp2248S248NaGcaAc1616AY.260.000453
ORF1ab/nsp2248S248IaGcaTc1616AY.40.000025
ORF1ab/nsp2248S248GAgcGgc1616B.1.6330.666667
ORF1ab/nsp2248S248SagCagT1515AY.250.00009
ORF1ab/nsp2248S248GAgcGgc1414AY.390.000346
ORF1ab/nsp2248S248RAgcCgc1414AY.460.001457
ORF1ab/nsp2248S248GAgcGgc1414AY.9.20.000514
ORF1ab/nsp2248S248SagCagT1414B.1.177.810.002651
ORF1ab/nsp2248S248SagCagT1414B.1.6210.001239
ORF1ab/nsp2248S248SagCagT1313AY.1020.000345
ORF1ab/nsp2248S248SagCagT1313AY.390.000321
ORF1ab/nsp2248S248RagCagA1313AY.4.20.000282
ORF1ab/nsp2248S248NaGcaAc1313AY.430.000058
ORF1ab/nsp2248S248RAgcCgc1313AY.7.10.001465
ORF1ab/nsp2248S248RAgcCgc1313AY.9.20.000477
ORF1ab/nsp2248S248GAgcGgc1313B.1.2430.000905
ORF1ab/nsp2248S248SagCagT1313B.1.6190.011324
ORF1ab/nsp2248S248NaGcaAc1212AY.1140.002773
ORF1ab/nsp2248S248GAgcGgc1212AY.130.001932
ORF1ab/nsp2248S248GAgcGgc1212AY.430.000053
ORF1ab/nsp2248S248GAgcGgc1212B.1.1.1890.018154
ORF1ab/nsp2248S248RAgcCgc1111AY.4.40.004501
ORF1ab/nsp2248S248GAgcGgc1111B.1.2580.000732
ORF1ab/nsp2248S248SagCagT1111B.1.5260.000259
ORF1ab/nsp2248S248GAgcGgc1111B.1.575.20.052885
ORF1ab/nsp2248S248SagCagT1111B.1.6230.005901
ORF1ab/nsp2248S248TaGcaCc910All0.000002
ORF1ab/nsp2248S248TaGCaCT110All0
ORF1ab/nsp2248S248NaGcaAc1010AY.1030.000062
ORF1ab/nsp2248S248GAgcGgc1010AY.200.000389
ORF1ab/nsp2248S248GAgcGgc1010AY.420.000402
ORF1ab/nsp2248S248RAgcCgc910B.1.10.000163
ORF1ab/nsp2248S248RagCagG110B.1.10.000018
ORF1ab/nsp2248S248NaGcaAc1010B.1.20.000088
ORF1ab/nsp2248S248NaGcaAc1010B.1.617.20.000038
ORF1ab/nsp2248S248GAgcGgc99AY.1020.000239
ORF1ab/nsp2248S248SagCagT99AY.260.000255
ORF1ab/nsp2248S248GAgcGgc99AY.290.000142
ORF1ab/nsp2248S248NaGcaAc99AY.30.00009
ORF1ab/nsp2248S248NaGcaAc99AY.40.000014
ORF1ab/nsp2248S248RAgcCgc99AY.90.000608
ORF1ab/nsp2248S248NaGcaAc99AY.930.002458
ORF1ab/nsp2248S248RAgcCgc99AY.980.000711
ORF1ab/nsp2248S248GAgcGgc99B.1.1.280.002801
ORF1ab/nsp2248S248NaGcaAc99B.1.3510.000268
ORF1ab/nsp2248S248GAgcGgc99B.1.6210.000797
ORF1ab/nsp2248S248SagCagT88AY.30.00008
ORF1ab/nsp2248S248SagCagT88AY.330.000534
ORF1ab/nsp2248S248NaGcaAc88B.1.177.170.006568
ORF1ab/nsp2248S248RAgcCgc77AY.1060.002344
ORF1ab/nsp2248S248SagCagT77AY.140.000616
ORF1ab/nsp2248S248SagCagT77AY.570.004593
ORF1ab/nsp2248S248RAgcCgc77AY.950.005327
ORF1ab/nsp2248S248CAgcTgc77B.1.1.2370.037838
ORF1ab/nsp2248S248delAGC---77B.1.1.70.000006
ORF1ab/nsp2248S248SagCagT77B.1.5770.004811
ORF1ab/nsp2248S248RAgcCgc47P.10.000063
ORF1ab/nsp2248S248RagCagA27P.10.000032
ORF1ab/nsp2248S248RagCagG17P.10.000016
ORF1ab/nsp2248S248RAgcCgc66AY.1160.001721
ORF1ab/nsp2248S248NaGcaAc66AY.1190.000212
ORF1ab/nsp2248S248IaGcaTc66AY.250.000036
ORF1ab/nsp2248S248GAgcGgc66AY.260.00017
ORF1ab/nsp2248S248RAgcCgc66AY.4.30.005051
ORF1ab/nsp2248S248NaGcaAc66AY.60.000247
ORF1ab/nsp2248S248GAgcGgc66AY.610.000629
ORF1ab/nsp2248S248RAgcCgc66AY.680.001642
ORF1ab/nsp2248S248GAgcGgc66AY.90.000406
ORF1ab/nsp2248S248GAgcGgc66AY.98.10.000291
ORF1ab/nsp2248S248GAgcGgc66B.1.1.3060.00263
ORF1ab/nsp2248S248SagCagT66B.1.1.5190.000238
ORF1ab/nsp2248S248RAgcCgc66B.1.2580.000399
ORF1ab/nsp2248S248NaGcaAc66B.1.5260.000141
ORF1ab/nsp2248S248GAgcGgc66B.1.5970.027778
ORF1ab/nsp2248S248RAgcCgc66Q.40.002729
ORF1ab/nsp2248S248SagCagT350.166667
ORF1ab/nsp2248S248SAGcTCc150.055556
ORF1ab/nsp2248S248SAGCTCT150.055556
ORF1ab/nsp2248S248del1Agc-gc35All0.000001
ORF1ab/nsp2248S248del1aGca-c25All0
ORF1ab/nsp2248S248GAgcGgc55AY.1200.000186
ORF1ab/nsp2248S248NaGcaAc55AY.20.001781
ORF1ab/nsp2248S248GAgcGgc55AY.30.00005
ORF1ab/nsp2248S248NaGcaAc55AY.440.00003
ORF1ab/nsp2248S248GAgcGgc55AY.450.000608
ORF1ab/nsp2248S248SagCagT55AY.540.000477
ORF1ab/nsp2248S248GAgcGgc55AY.60.000206
ORF1ab/nsp2248S248SagCagT55AY.990.005247
ORF1ab/nsp2248S248CAgcTgc55B.1.1.380.294118
ORF1ab/nsp2248S248GAgcGgc55B.1.1.590.032468
ORF1ab/nsp2248S248GAgcGgc55B.1.177.810.000947
ORF1ab/nsp2248S248GAgcGgc55B.1.3510.000149
ORF1ab/nsp2248S248GAgcGgc55B.1.6280.001762
ORF1ab/nsp2248S248GAgcGgc55C.370.00058
ORF1ab/nsp2248S248NaGcaAc55N.50.008834
ORF1ab/nsp2248S248NaGcaAc55P.10.000079
ORF1ab/nsp2248S248CAgcTgc340.166667
ORF1ab/nsp2248S248CAgCTgT140.055556
ORF1ab/nsp2248S248RAgcCgc44AY.1110.000733
ORF1ab/nsp2248S248GAgcGgc44AY.1190.000141
ORF1ab/nsp2248S248RAgcCgc44AY.230.000279
ORF1ab/nsp2248S248SagCagT44AY.290.000063
ORF1ab/nsp2248S248RAgcCgc44AY.330.000267
ORF1ab/nsp2248S248RAgcCgc44AY.340.000388
ORF1ab/nsp2248S248SagCagT44AY.470.000124
ORF1ab/nsp2248S248SagCagT44AY.50.000083
ORF1ab/nsp2248S248RAgcCgc44AY.700.000834
ORF1ab/nsp2248S248SagCagT44AY.90.00027
ORF1ab/nsp2248S248SagCagT44AY.910.002922
ORF1ab/nsp2248S248GAgcGgc44B0.000511
ORF1ab/nsp2248S248RAgcCgc44B0.000511
ORF1ab/nsp2248S248SagCagT44B.1.10.000073
ORF1ab/nsp2248S248GAgcGgc44B.1.1.1290.036697
ORF1ab/nsp2248S248delAGC---44B.1.1.330.001684
ORF1ab/nsp2248S248SagCagT44B.1.1.630.001543
ORF1ab/nsp2248S248IaGcaTc44B.1.1.70.000004
ORF1ab/nsp2248S248NaGcaAc44B.1.177.570.001124
ORF1ab/nsp2248S248SagCagT44B.1.177.820.001909
ORF1ab/nsp2248S248SagCagT44B.1.2430.000278
ORF1ab/nsp2248S248SagCagT44B.1.360.000584
ORF1ab/nsp2248S248SagCagT44B.1.3690.001141
ORF1ab/nsp2248S248RagCagA44B.1.4270.000202
ORF1ab/nsp2248S248GAgcGgc44B.1.5300.028571
ORF1ab/nsp2248S248SagCagT44B.1.621.10.002023
ORF1ab/nsp2248S248RAgcCgc44C.36.30.002269
ORF1ab/nsp2248S248SagCagT44P.1.140.000191
ORF1ab/nsp2248S248IaGCaTT230.111111
ORF1ab/nsp2248S248IaGcaTc130.055556
ORF1ab/nsp2248S248RAgcCgc33AT.10.015385
ORF1ab/nsp2248S248GAgcGgc33AU.30.006329
ORF1ab/nsp2248S248NaGcaAc33AY.1000.000138
ORF1ab/nsp2248S248GAgcGgc33AY.1180.000188
ORF1ab/nsp2248S248IaGcaTc33AY.1190.000106
ORF1ab/nsp2248S248RAgcCgc33AY.1200.000112
ORF1ab/nsp2248S248RAgcCgc33AY.240.001293
ORF1ab/nsp2248S248RAgcCgc33AY.250.000018
ORF1ab/nsp2248S248RagCagA23AY.360.000296
ORF1ab/nsp2248S248RAgcCgc13AY.360.000148
ORF1ab/nsp2248S248GAgcGgc33AY.39.10.000119
ORF1ab/nsp2248S248SagCagT33AY.4.20.000065
ORF1ab/nsp2248S248NaGcaAc33AY.46.40.000494
ORF1ab/nsp2248S248CAgcTgc33AY.46.40.000494
ORF1ab/nsp2248S248RAgcCgc33AY.46.40.000494
ORF1ab/nsp2248S248GAgcGgc33AY.46.60.000217
ORF1ab/nsp2248S248IaGcaTc33AY.50.000062
ORF1ab/nsp2248S248GAgcGgc33AY.50.000062
ORF1ab/nsp2248S248IaGcaTc33AY.540.000286
ORF1ab/nsp2248S248RAgcCgc33AY.60.000123
ORF1ab/nsp2248S248RAgcCgc33AY.600.002814
ORF1ab/nsp2248S248RAgcCgc33AY.7.20.001678
ORF1ab/nsp2248S248NaGcaAc33AY.850.001282
ORF1ab/nsp2248S248GAgcGgc33AY.9.10.000251
ORF1ab/nsp2248S248SagCagT33AY.9.20.00011
ORF1ab/nsp2248S248delAGC---33B.1.1.3480.002389
ORF1ab/nsp2248S248GAgcGgc33B.1.1.3510.00838
ORF1ab/nsp2248S248CAgcTgc33B.1.1.3630.017964
ORF1ab/nsp2248S248GAgcGgc33B.1.1.380.176471
ORF1ab/nsp2248S248GAgcGgc33B.1.1.500.002037
ORF1ab/nsp2248S248NaGcaAc33B.1.1.5190.000119
ORF1ab/nsp2248S248GAgcGgc33B.1.1.5190.000119
ORF1ab/nsp2248S248GAgcGgc33B.1.1.630.001157
ORF1ab/nsp2248S248SagCagT33B.1.1600.000094
ORF1ab/nsp2248S248CAgcTgc33B.1.1770.00004
ORF1ab/nsp2248S248IaGcaTc33B.1.1770.00004
ORF1ab/nsp2248S248SagCagT33B.1.177.730.001699
ORF1ab/nsp2248S248IaGcaTc33B.1.20.000026
ORF1ab/nsp2248S248GAgcGgc33B.1.2210.000213
ORF1ab/nsp2248S248RagCagA33B.1.2430.000209
ORF1ab/nsp2248S248GAgcGgc33B.1.360.000438
ORF1ab/nsp2248S248SagCagT33B.1.36.180.001261
ORF1ab/nsp2248S248GAgcGgc33B.1.4330.009585
ORF1ab/nsp2248S248GAgcGgc33B.1.4590.012245
ORF1ab/nsp2248S248GAgcGgc33B.1.5960.000261
ORF1ab/nsp2248S248SagCagT33D.20.000225
ORF1ab/nsp2248S248GAgcGgc33P.1.120.001452
ORF1ab/nsp2248S248GAgcGgc33P.1.150.000697
ORF1ab/nsp2248S248SagCagT33P.20.00056
ORF1ab/nsp2248S248SagCagT33Q.80.000495
ORF1ab/nsp2248S248VAGCGTT220.111111
ORF1ab/nsp2248S248GAgCGgT220.111111
ORF1ab/nsp2248S248TaGcaCc120.055556
ORF1ab/nsp2248S248TaGCaCT120.055556
ORF1ab/nsp2248S248NaGcaAc22A0.000774
ORF1ab/nsp2248S248SagCagT22A.10.000564
ORF1ab/nsp2248S248GAgcGgc22A.2.50.000998
ORF1ab/nsp2248S248KaGCaAG22All0
ORF1ab/nsp2248S248VAGCGTT22All0
ORF1ab/nsp2248S248FAGcTTc22All0
ORF1ab/nsp2248S248WAgCTgG22All0
ORF1ab/nsp2248S248SagCagT22AY.1000.000092
ORF1ab/nsp2248S248GAgcGgc22AY.1000.000092
ORF1ab/nsp2248S248NaGcaAc22AY.1020.000053
ORF1ab/nsp2248S248IaGcaTc22AY.1030.000012
ORF1ab/nsp2248S248SagCagT22AY.1060.00067
ORF1ab/nsp2248S248SagCagT22AY.1130.000285
ORF1ab/nsp2248S248RAgcCgc22AY.1180.000125
ORF1ab/nsp2248S248RAgcCgc22AY.30.00002
ORF1ab/nsp2248S248GAgcGgc22AY.330.000134
ORF1ab/nsp2248S248GAgcGgc22AY.340.000194
ORF1ab/nsp2248S248GAgcGgc22AY.370.000632
ORF1ab/nsp2248S248NaGcaAc22AY.390.000049
ORF1ab/nsp2248S248SagCagT22AY.39.10.000079
ORF1ab/nsp2248S248GAgcGgc22AY.4.20.000043
ORF1ab/nsp2248S248RAgcCgc22AY.450.000243
ORF1ab/nsp2248S248NaGcaAc22AY.460.000208
ORF1ab/nsp2248S248GAgcGgc22AY.470.000062
ORF1ab/nsp2248S248NaGcaAc22AY.50.000041
ORF1ab/nsp2248S248RAgcCgc22AY.580.001815
ORF1ab/nsp2248S248SagCagT22AY.590.001059
ORF1ab/nsp2248S248RAgcCgc22AY.710.00095
ORF1ab/nsp2248S248GAgcGgc22AY.750.000112
ORF1ab/nsp2248S248RAgcCgc22AY.840.000875
ORF1ab/nsp2248S248SagCagT22AY.9.10.000167
ORF1ab/nsp2248S248RAgcCgc22AY.910.001461
ORF1ab/nsp2248S248RAgcCgc22AY.920.000575
ORF1ab/nsp2248S248GAgcGgc22AY.980.000158
ORF1ab/nsp2248S248GAgcGgc22AY.990.002099
ORF1ab/nsp2248S248IaGcaTc22B.10.000018
ORF1ab/nsp2248S248NaGcaAc22B.1.10.000036
ORF1ab/nsp2248S248SagCagT22B.1.1.2220.000408
ORF1ab/nsp2248S248GAgcGgc22B.1.1.2370.010811
ORF1ab/nsp2248S248GAgcGgc22B.1.1.2970.004474
ORF1ab/nsp2248S248GAgcGgc22B.1.1.3480.001592
ORF1ab/nsp2248S248RAgcCgc22B.1.1.3630.011976
ORF1ab/nsp2248S248GAgcGgc22B.1.1.3630.011976
ORF1ab/nsp2248S248GAgcGgc22B.1.1.3910.017094
ORF1ab/nsp2248S248GAgcGgc22B.1.1.4090.005666
ORF1ab/nsp2248S248SagCagT22B.1.1.500.001358
ORF1ab/nsp2248S248CAgcTgc22B.1.1200.015385
ORF1ab/nsp2248S248SagCagT22B.1.1470.001512
ORF1ab/nsp2248S248GAgcGgc22B.1.1600.000062
ORF1ab/nsp2248S248RAgcCgc22B.1.1600.000062
ORF1ab/nsp2248S248SagCagT22B.1.177.40.000422
ORF1ab/nsp2248S248GAgcGgc22B.1.177.580.002663
ORF1ab/nsp2248S248SagCagT22B.1.177.600.000437
ORF1ab/nsp2248S248GAgcGgc22B.1.177.790.004684
ORF1ab/nsp2248S248NaGcaAc22B.1.2370.00995
ORF1ab/nsp2248S248SagCagT22B.1.2580.000133
ORF1ab/nsp2248S248SagCagT22B.1.258.140.001961
ORF1ab/nsp2248S248NaGcaAc22B.1.3110.000549
ORF1ab/nsp2248S248SagCagT22B.1.3510.000059
ORF1ab/nsp2248S248GAgcGgc22B.1.36.290.001035
ORF1ab/nsp2248S248GAgcGgc22B.1.36.310.003503
ORF1ab/nsp2248S248GAgcGgc22B.1.4000.000858
ORF1ab/nsp2248S248SagCagT22B.1.4040.002604
ORF1ab/nsp2248S248SagCagT22B.1.4270.000101
ORF1ab/nsp2248S248GAgcGgc22B.1.4290.000047
ORF1ab/nsp2248S248GAgcGgc22B.1.5230.004902
ORF1ab/nsp2248S248RAgcCgc22B.1.5270.007407
ORF1ab/nsp2248S248NaGcaAc22B.1.5950.000522
ORF1ab/nsp2248S248CAgcTgc22B.1.617.20.000008
ORF1ab/nsp2248S248IaGcaTc22B.1.617.20.000008
ORF1ab/nsp2248S248NaGcaAc22B.1.6360.013423
ORF1ab/nsp2248S248RAgcCgc22B.1.910.004149
ORF1ab/nsp2248S248RagCagA22B.400.000729
ORF1ab/nsp2248S248CAgcTgc22D.20.00015
ORF1ab/nsp2248S248delAGC---22N.60.014184
ORF1ab/nsp2248S248GAgcGgc22P.1.140.000096
ORF1ab/nsp2248S248delAGC---22P.20.000373
ORF1ab/nsp2248S248SagCagT22Q.10.000253
ORF1ab/nsp2248S248RAgcCgc22Q.80.00033
ORF1ab/nsp2248S248FAGcTTc110.055556
ORF1ab/nsp2248S248WAgCTgG110.055556
ORF1ab/nsp2248S248MaGCaTG110.055556
ORF1ab/nsp2248S248RagCagG110.055556
ORF1ab/nsp2248S248LAGCTTG110.055556
ORF1ab/nsp2248S248SagCagT11A.23.10.000704
ORF1ab/nsp2248S248LAGCTTG11All0
ORF1ab/nsp2248S248MaGCaTG11All0
ORF1ab/nsp2248S248XAGCTAG11All0
ORF1ab/nsp2248S248EAGCGAA11All0
ORF1ab/nsp2248S248YAGcTAc11All0
ORF1ab/nsp2248S248IaGcaTc11AY.1000.000046
ORF1ab/nsp2248S248RAgcCgc11AY.1020.000027
ORF1ab/nsp2248S248IaGcaTc11AY.1020.000027
ORF1ab/nsp2248S248RagCagA11AY.1030.000006
ORF1ab/nsp2248S248GAgcGgc11AY.1060.000335
ORF1ab/nsp2248S248RAgcCgc11AY.1080.001103
ORF1ab/nsp2248S248RagCagA11AY.1090.00074
ORF1ab/nsp2248S248RAgcCgc11AY.1130.000142
ORF1ab/nsp2248S248GAgcGgc11AY.1130.000142
ORF1ab/nsp2248S248SagCagT11AY.1160.000287
ORF1ab/nsp2248S248SagCagT11AY.1180.000063
ORF1ab/nsp2248S248SagCagT11AY.1190.000035
ORF1ab/nsp2248S248delAGC---11AY.1200.000037
ORF1ab/nsp2248S248RagCagA11AY.120.10.000321
ORF1ab/nsp2248S248SagCagT11AY.120.10.000321
ORF1ab/nsp2248S248SagCagT11AY.1210.000135
ORF1ab/nsp2248S248del1aGca-c11AY.20.000356
ORF1ab/nsp2248S248SagCagT11AY.200.000039
ORF1ab/nsp2248S248SagCagT11AY.210.001898
ORF1ab/nsp2248S248GAgcGgc11AY.230.00007
ORF1ab/nsp2248S248TaGcaCc11AY.250.000006
ORF1ab/nsp2248S248CAgcTgc11AY.250.000006
ORF1ab/nsp2248S248NaGcaAc11AY.250.000006
ORF1ab/nsp2248S248RAgcCgc11AY.260.000028
ORF1ab/nsp2248S248NaGcaAc11AY.290.000016
ORF1ab/nsp2248S248SagCagT11AY.3.10.000085
ORF1ab/nsp2248S248SagCagT11AY.300.000396
ORF1ab/nsp2248S248SagCagT11AY.320.000532
ORF1ab/nsp2248S248SagCagT11AY.340.000097
ORF1ab/nsp2248S248TaGcaCc11AY.34.10.00051
ORF1ab/nsp2248S248GAgcGgc11AY.360.000148
ORF1ab/nsp2248S248SagCagT11AY.380.000499
ORF1ab/nsp2248S248RagCagA11AY.390.000025
ORF1ab/nsp2248S248NaGcaAc11AY.39.10.00004
ORF1ab/nsp2248S248CAgcTgc11AY.40.000002
ORF1ab/nsp2248S248TaGcaCc11AY.4.20.000022
ORF1ab/nsp2248S248delAGC---11AY.4.50.000107
ORF1ab/nsp2248S248SagCagT11AY.4.50.000107
ORF1ab/nsp2248S248GAgcGgc11AY.400.000964
ORF1ab/nsp2248S248CAgcTgc11AY.430.000004
ORF1ab/nsp2248S248delAGC---11AY.440.000006
ORF1ab/nsp2248S248CAgcTgc11AY.440.000006
ORF1ab/nsp2248S248TaGcaCc11AY.440.000006
ORF1ab/nsp2248S248IaGcaTc11AY.440.000006
ORF1ab/nsp2248S248SagCagT11AY.450.000122
ORF1ab/nsp2248S248NaGcaAc11AY.450.000122
ORF1ab/nsp2248S248SagCagT11AY.460.000104
ORF1ab/nsp2248S248GAgcGgc11AY.460.000104
ORF1ab/nsp2248S248SagCagT11AY.46.10.001027
ORF1ab/nsp2248S248GAgcGgc11AY.46.20.000635
ORF1ab/nsp2248S248RAgcCgc11AY.46.50.000198
ORF1ab/nsp2248S248SagCagT11AY.46.60.000072
ORF1ab/nsp2248S248SagCagT11AY.480.000465
ORF1ab/nsp2248S248GAgcGgc11AY.5.20.002463
ORF1ab/nsp2248S248RAgcCgc11AY.5.40.000277
ORF1ab/nsp2248S248RAgcCgc11AY.530.000288
ORF1ab/nsp2248S248NaGcaAc11AY.580.000907
ORF1ab/nsp2248S248NaGcaAc11AY.590.00053
ORF1ab/nsp2248S248SagCagT11AY.60.000041
ORF1ab/nsp2248S248delAGC---11AY.60.000041
ORF1ab/nsp2248S248NaGcaAc11AY.620.000436
ORF1ab/nsp2248S248GAgcGgc11AY.650.000533
ORF1ab/nsp2248S248SagCagT11AY.680.000274
ORF1ab/nsp2248S248NaGcaAc11AY.690.000187
ORF1ab/nsp2248S248SagCagT11AY.700.000209
ORF1ab/nsp2248S248RAgcCgc11AY.730.000665
ORF1ab/nsp2248S248GAgcGgc11AY.770.001127
ORF1ab/nsp2248S248SagCagT11AY.800.001129
ORF1ab/nsp2248S248SagCagT11AY.840.000437
ORF1ab/nsp2248S248NaGcaAc11AY.880.000884
ORF1ab/nsp2248S248NaGcaAc11AY.90.000068
ORF1ab/nsp2248S248NaGcaAc11AY.9.20.000037
ORF1ab/nsp2248S248GAgcGgc11AY.910.00073
ORF1ab/nsp2248S248SagCagT11AY.950.000761
ORF1ab/nsp2248S248RAgcCgc11AY.970.001701
ORF1ab/nsp2248S248NaGcaAc11AY.980.000079
ORF1ab/nsp2248S248CAgcTgc11B0.000128
ORF1ab/nsp2248S248delAGC---11B.10.000009
ORF1ab/nsp2248S248CAgcTgc11B.10.000009
ORF1ab/nsp2248S248TaGcaCc11B.10.000009
ORF1ab/nsp2248S248GAgcGgc11B.1.1.10.000327
ORF1ab/nsp2248S248NaGcaAc11B.1.1.100.001115
ORF1ab/nsp2248S248SagCagT11B.1.1.1110.014706
ORF1ab/nsp2248S248GAgcGgc11B.1.1.1700.001247
ORF1ab/nsp2248S248RAgcCgc11B.1.1.1940.00495
ORF1ab/nsp2248S248SagCagT11B.1.1.2140.000055
ORF1ab/nsp2248S248GAgcGgc11B.1.1.2200.001859
ORF1ab/nsp2248S248NaGcaAc11B.1.1.2220.000204
ORF1ab/nsp2248S248GAgcGgc11B.1.1.2560.013699
ORF1ab/nsp2248S248delAGC---11B.1.1.2840.000107
ORF1ab/nsp2248S248CAgcTgc11B.1.1.290.010309
ORF1ab/nsp2248S248GAgcGgc11B.1.1.2940.001266
ORF1ab/nsp2248S248NaGcaAc11B.1.1.3050.003861
ORF1ab/nsp2248S248SagCagT11B.1.1.3170.000412
ORF1ab/nsp2248S248RAgcCgc11B.1.1.3170.000412
ORF1ab/nsp2248S248SagCagT11B.1.1.3180.000302
ORF1ab/nsp2248S248SagCagT11B.1.1.3280.016949
ORF1ab/nsp2248S248GAgcGgc11B.1.1.330.000421
ORF1ab/nsp2248S248GAgcGgc11B.1.1.340.013158
ORF1ab/nsp2248S248SagCagT11B.1.1.370.000193
ORF1ab/nsp2248S248GAgcGgc11B.1.1.370.000193
ORF1ab/nsp2248S248SagCagT11B.1.1.3720.000689
ORF1ab/nsp2248S248GAgcGgc11B.1.1.3720.000689
ORF1ab/nsp2248S248SagCagT11B.1.1.3810.04
ORF1ab/nsp2248S248SagCagT11B.1.1.390.00051
ORF1ab/nsp2248S248SagCagT11B.1.1.4190.007407
ORF1ab/nsp2248S248RAgcCgc11B.1.1.4330.001425
ORF1ab/nsp2248S248NaGcaAc11B.1.1.4340.000349
ORF1ab/nsp2248S248GAgcGgc11B.1.1.4340.000349
ORF1ab/nsp2248S248GAgcGgc11B.1.1.4480.002033
ORF1ab/nsp2248S248CAgcTgc11B.1.1.5190.00004
ORF1ab/nsp2248S248RAgcCgc11B.1.1.5230.001563
ORF1ab/nsp2248S248RAgcCgc11B.1.1.580.005376
ORF1ab/nsp2248S248EAGCGAA11B.1.1.70.000001
ORF1ab/nsp2248S248KaGCaAG11B.1.1.70.000001
ORF1ab/nsp2248S248del1Agc-gc11B.1.1.70.000001
ORF1ab/nsp2248S248RAgcCgc11B.1.1.700.000341
ORF1ab/nsp2248S248CAgcTgc11B.1.1.950.019608
ORF1ab/nsp2248S248GAgcGgc11B.1.110.30.000718
ORF1ab/nsp2248S248CAgcTgc11B.1.1420.002899
ORF1ab/nsp2248S248GAgcGgc11B.1.1420.002899
ORF1ab/nsp2248S248RAgcCgc11B.1.1460.004237
ORF1ab/nsp2248S248NaGcaAc11B.1.1470.000756
ORF1ab/nsp2248S248RAgcCgc11B.1.1490.003425
ORF1ab/nsp2248S248IaGcaTc11B.1.1570.002985
ORF1ab/nsp2248S248TaGcaCc11B.1.1600.000031
ORF1ab/nsp2248S248SagCagT11B.1.160.220.006757
ORF1ab/nsp2248S248NaGcaAc11B.1.160.90.007194
ORF1ab/nsp2248S248RAgcCgc11B.1.1770.000013
ORF1ab/nsp2248S248IaGcaTc11B.1.177.150.000631
ORF1ab/nsp2248S248SagCagT11B.1.177.320.00135
ORF1ab/nsp2248S248SagCagT11B.1.177.330.001645
ORF1ab/nsp2248S248GAgcGgc11B.1.177.40.000211
ORF1ab/nsp2248S248RAgcCgc11B.1.177.510.004566
ORF1ab/nsp2248S248GAgcGgc11B.1.177.520.001757
ORF1ab/nsp2248S248SagCagT11B.1.177.550.002331
ORF1ab/nsp2248S248SagCagT11B.1.177.570.000281
ORF1ab/nsp2248S248RAgcCgc11B.1.177.600.000218
ORF1ab/nsp2248S248SagCagT11B.1.177.650.000665
ORF1ab/nsp2248S248GAgcGgc11B.1.177.730.000566
ORF1ab/nsp2248S248delAGC---11B.1.177.730.000566
ORF1ab/nsp2248S248GAgcGgc11B.1.177.770.000726
ORF1ab/nsp2248S248RAgcCgc11B.1.177.790.002342
ORF1ab/nsp2248S248RAgcCgc11B.1.177.830.001481
ORF1ab/nsp2248S248GAgcGgc11B.1.177.860.000183
ORF1ab/nsp2248S248TaGcaCc11B.1.20.000009
ORF1ab/nsp2248S248del1aGca-c11B.1.20.000009
ORF1ab/nsp2248S248CAgcTgc11B.1.2010.005682
ORF1ab/nsp2248S248GAgcGgc11B.1.214.20.0006
ORF1ab/nsp2248S248NaGcaAc11B.1.2210.000071
ORF1ab/nsp2248S248CAgcTgc11B.1.2210.000071
ORF1ab/nsp2248S248RAgcCgc11B.1.2210.000071
ORF1ab/nsp2248S248GAgcGgc11B.1.2360.002053
ORF1ab/nsp2248S248RagCagA11B.1.2390.001221
ORF1ab/nsp2248S248GAgcGgc11B.1.2400.000216
ORF1ab/nsp2248S248IaGcaTc11B.1.2410.000812
ORF1ab/nsp2248S248SagCagT11B.1.258.30.001675
ORF1ab/nsp2248S248RagCagA11B.1.2650.001271
ORF1ab/nsp2248S248SagCagT11B.1.3290.000608
ORF1ab/nsp2248S248SagCagT11B.1.3360.002439
ORF1ab/nsp2248S248CAgcTgc11B.1.350.008475
ORF1ab/nsp2248S248RagCagA11B.1.360.000146
ORF1ab/nsp2248S248NaGcaAc11B.1.36.160.001425
ORF1ab/nsp2248S248GAgcGgc11B.1.36.170.000494
ORF1ab/nsp2248S248NaGcaAc11B.1.36.180.00042
ORF1ab/nsp2248S248GAgcGgc11B.1.36.220.001208
ORF1ab/nsp2248S248CAgcTgc11B.1.36.390.002217
ORF1ab/nsp2248S248GAgcGgc11B.1.3690.000285
ORF1ab/nsp2248S248RagCagA11B.1.3960.000706
ORF1ab/nsp2248S248SagCagT11B.1.4000.000429
ORF1ab/nsp2248S248NaGcaAc11B.1.4010.008197
ORF1ab/nsp2248S248GAgcGgc11B.1.4150.014286
ORF1ab/nsp2248S248KaGCaAG11B.1.4170.028571
ORF1ab/nsp2248S248NaGcaAc11B.1.4170.028571
ORF1ab/nsp2248S248XAGCTAG11B.1.4170.028571
ORF1ab/nsp2248S248YAGcTAc11B.1.4170.028571
ORF1ab/nsp2248S248WAgCTgG11B.1.4170.028571
ORF1ab/nsp2248S248RagCagG11B.1.4170.028571
ORF1ab/nsp2248S248CAgcTgc11B.1.4170.028571
ORF1ab/nsp2248S248SagCagT11B.1.4220.000812
ORF1ab/nsp2248S248GAgcGgc11B.1.4270.00005
ORF1ab/nsp2248S248delAGC---11B.1.4290.000024
ORF1ab/nsp2248S248del1Agc-gc11B.1.4290.000024
ORF1ab/nsp2248S248RAgcCgc11B.1.4820.083333
ORF1ab/nsp2248S248RagCagA11B.1.5150.014493
ORF1ab/nsp2248S248SagCagT11B.1.5250.000113
ORF1ab/nsp2248S248GAgcGgc11B.1.5260.000024
ORF1ab/nsp2248S248RagCagA11B.1.5260.000024
ORF1ab/nsp2248S248del1Agc-gc11B.1.5330.009615
ORF1ab/nsp2248S248GAgcGgc11B.1.5400.009709
ORF1ab/nsp2248S248TaGcaCc11B.1.5670.003333
ORF1ab/nsp2248S248SagCagT11B.1.5740.002151
ORF1ab/nsp2248S248IaGcaTc11B.1.6060.006024
ORF1ab/nsp2248S248GAgcGgc11B.1.617.10.000129
ORF1ab/nsp2248S248SagCagT11B.1.617.10.000129
ORF1ab/nsp2248S248NaGcaAc11B.1.617.10.000129
ORF1ab/nsp2248S248delAGC---11B.1.617.20.000004
ORF1ab/nsp2248S248FAGcTTc11B.1.617.20.000004
ORF1ab/nsp2248S248NaGcaAc11B.1.6210.000089
ORF1ab/nsp2248S248delAGC---11B.1.6210.000089
ORF1ab/nsp2248S248GAgcGgc11B.1.6230.000536
ORF1ab/nsp2248S248RAgcCgc11B.1.6250.002353
ORF1ab/nsp2248S248SagCagT11B.1.6370.000073
ORF1ab/nsp2248S248SagCagT11B.1.930.000934
ORF1ab/nsp2248S248delAGC---11B.4.40.018868
ORF1ab/nsp2248S248CAgcTgc11B.400.000364
ORF1ab/nsp2248S248RAgcCgc11B.550.00295
ORF1ab/nsp2248S248GAgcGgc11B.60.00091
ORF1ab/nsp2248S248GAgcGgc11B.610.005747
ORF1ab/nsp2248S248RagCagA11C.370.000116
ORF1ab/nsp2248S248CAgcTgc11C.370.000116
ORF1ab/nsp2248S248GAgcGgc11C.37.10.002618
ORF1ab/nsp2248S248IaGcaTc11D.20.000075
ORF1ab/nsp2248S248NaGcaAc11L.10.001905
ORF1ab/nsp2248S248CAgcTgc11P.10.000016
ORF1ab/nsp2248S248RAgcCgc11P.1.10.000318
ORF1ab/nsp2248S248GAgcGgc11P.1.100.000269
ORF1ab/nsp2248S248SagCagT11P.1.150.000232
ORF1ab/nsp2248S248GAgcGgc11P.1.170.000162
ORF1ab/nsp2248S248GAgcGgc11P.1.20.001156
ORF1ab/nsp2248S248SagCagT11P.1.60.001946
ORF1ab/nsp2248S248NaGcaAc11P.1.70.000319
ORF1ab/nsp2248S248RagCagA11P.20.000187
ORF1ab/nsp2248S248SagCagT11P.70.004367
ORF1ab/nsp2248S248delAGC---11Q.10.000126
ORF1ab/nsp2248S248GAgcGgc11Q.10.000126
ORF1ab/nsp2248S248RAgcCgc11Q.20.000613
ORF1ab/nsp2248S248IaGcaTc11Q.30.000145
ORF1ab/nsp2248S248NaGcaAc11Q.80.000165
ORF1ab/nsp2248S248SagCagT11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.