CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 237

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	237	H237Y	H417Y	nonsyn	Cat	Tat	6532	6530	0.999694	1514-1516
ORF1ab/nsp2	237	H237Y	H417Y	nonsyn	CaT	TaC	6532	2	0.000306185	1514-1516
ORF1ab/nsp2	237	H237R	H417R	nonsyn	cAt	cGt	1225	1219	0.995102	1514-1516
ORF1ab/nsp2	237	H237R	H417R	nonsyn	cAT	cGC	1225	6	0.00489796	1514-1516
ORF1ab/nsp2	237	H237H	H417H	syn	caT	caC	796	796	1	1514-1516
ORF1ab/nsp2	237	H237N	H417N	nonsyn	Cat	Aat	50	47	0.94	1514-1516
ORF1ab/nsp2	237	H237N	H417N	nonsyn	CaT	AaC	50	3	0.06	1514-1516
ORF1ab/nsp2	237	H237del	H417del	del	CAT	---	40	40	1	1514-1516
ORF1ab/nsp2	237	H237D	H417D	nonsyn	Cat	Gat	37	37	1	1514-1516
ORF1ab/nsp2	237	H237L	H417L	nonsyn	cAt	cTt	26	24	0.923077	1514-1516
ORF1ab/nsp2	237	H237L	H417L	nonsyn	cAT	cTC	26	2	0.0769231	1514-1516
ORF1ab/nsp2	237	H237Q	H417Q	nonsyn	caT	caA	25	24	0.96	1514-1516
ORF1ab/nsp2	237	H237Q	H417Q	nonsyn	caT	caG	25	1	0.04	1514-1516
ORF1ab/nsp2	237	H237A	H417A	nonsyn	CAt	GCt	17	17	1	1514-1516
ORF1ab/nsp2	237	H237F	H417F	nonsyn	CAt	TTt	6	3	0.5	1514-1516
ORF1ab/nsp2	237	H237F	H417F	nonsyn	CAT	TTC	6	3	0.5	1514-1516
ORF1ab/nsp2	237	H237S	H417S	nonsyn	CAT	AGC	4	2	0.5	1514-1516
ORF1ab/nsp2	237	H237S	H417S	nonsyn	CAt	AGt	4	2	0.5	1514-1516
ORF1ab/nsp2	237	H237P	H417P	nonsyn	cAt	cCt	2	2	1	1514-1516
ORF1ab/nsp2	237	H237I	H417I	nonsyn	CAT	ATA	1	1	1	1514-1516
ORF1ab/nsp2	237	H237C	H417C	nonsyn	CAt	TGt	1	1	1	1514-1516

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	237	H237Y	Cat	Tat	6530	6532	All	0.001249
ORF1ab/nsp2	237	H237Y	CaT	TaC	2	6532	All	0
ORF1ab/nsp2	237	H237R	cAt	cGt	1219	1225	All	0.000233
ORF1ab/nsp2	237	H237R	cAT	cGC	6	1225	All	0.000001
ORF1ab/nsp2	237	H237Y	Cat	Tat	1020	1020	AY.46	0.106162
ORF1ab/nsp2	237	H237Y	Cat	Tat	832	832	B.1.1.7	0.000745
ORF1ab/nsp2	237	H237H	caT	caC	796	796	All	0.000152
ORF1ab/nsp2	237	H237Y	Cat	Tat	663	663	B.1.617.2	0.002496
ORF1ab/nsp2	237	H237Y	Cat	Tat	516	516	AY.4	0.000803
ORF1ab/nsp2	237	H237R	cAt	cGt	426	426	B.39	0.993007
ORF1ab/nsp2	237	H237Y	Cat	Tat	339	339	AY.25	0.002039
ORF1ab/nsp2	237	H237Y	Cat	Tat	283	283	R.1	0.025473
ORF1ab/nsp2	237	H237R	cAt	cGt	214	217	AY.4	0.000333
ORF1ab/nsp2	237	H237R	cAT	cGC	3	217	AY.4	0.000005
ORF1ab/nsp2	237	H237H	caT	caC	203	203	AY.4	0.000316
ORF1ab/nsp2	237	H237Y	Cat	Tat	190	190	B.1.2	0.001673
ORF1ab/nsp2	237	H237R	cAt	cGt	169	169	B.1.1.7	0.000151
ORF1ab/nsp2	237	H237Y	Cat	Tat	142	142	B.1.1	0.002576
ORF1ab/nsp2	237	H237R	cAt	cGt	136	136	AY.103	0.000844
ORF1ab/nsp2	237	H237H	caT	caC	136	136	B.1.1.7	0.000122
ORF1ab/nsp2	237	H237Y	Cat	Tat	119	119	B.1.160	0.003711
ORF1ab/nsp2	237	H237Y	Cat	Tat	118	118	B.1.1.318	0.035607
ORF1ab/nsp2	237	H237Y	Cat	Tat	113	113	B.1.160.10	0.91129
ORF1ab/nsp2	237	H237Y	Cat	Tat	110	110	AY.43	0.000487
ORF1ab/nsp2	237	H237Y	Cat	Tat	109	109	AY.3	0.001084
ORF1ab/nsp2	237	H237Y	Cat	Tat	105	105	B.1.357	1
ORF1ab/nsp2	237	H237R	cAt	cGt	98	98	B.58	1
ORF1ab/nsp2	237	H237Y	Cat	Tat	96	96	B.1	0.000879
ORF1ab/nsp2	237	H237Y	Cat	Tat	89	89	AY.103	0.000553
ORF1ab/nsp2	237	H237Y	Cat	Tat	89	89	B.1.549	0.640288
ORF1ab/nsp2	237	H237Y	Cat	Tat	88	88	AY.39	0.002175
ORF1ab/nsp2	237	H237H	caT	caC	75	75	AY.84	0.032808
ORF1ab/nsp2	237	H237Y	Cat	Tat	63	63	B.1.526	0.001481
ORF1ab/nsp2	237	H237H	caT	caC	59	59	AY.3	0.000587
ORF1ab/nsp2	237	H237Y	Cat	Tat	57	57	AY.26	0.001614
ORF1ab/nsp2	237	H237Y	Cat	Tat	53	53	P.1	0.000835
ORF1ab/nsp2	237	H237N	Cat	Aat	47	50	All	0.000009
ORF1ab/nsp2	237	H237N	CaT	AaC	3	50	All	0.000001
ORF1ab/nsp2	237	H237Y	Cat	Tat	48	48	AY.44	0.000292
ORF1ab/nsp2	237	H237Y	Cat	Tat	47	47	B.1.1.406	0.305195
ORF1ab/nsp2	237	H237Y	Cat	Tat	47	47	B.1.177.16	0.031229
ORF1ab/nsp2	237	H237H	caT	caC	46	46	B.1.429	0.001082
ORF1ab/nsp2	237	H237del	CAT	---	40	40	All	0.000008
ORF1ab/nsp2	237	H237Y	Cat	Tat	39	39	AY.20	0.001516
ORF1ab/nsp2	237	H237Y	Cat	Tat	39	39	B.1.177	0.000514
ORF1ab/nsp2	237	H237Y	Cat	Tat	38	38	B.1.351	0.00113
ORF1ab/nsp2	237	H237D	Cat	Gat	37	37	All	0.000007
ORF1ab/nsp2	237	H237Y	Cat	Tat	35	35	B.1.426	0.035318
ORF1ab/nsp2	237	H237Y	Cat	Tat	34	34	B.1.1.28	0.010582
ORF1ab/nsp2	237	H237H	caT	caC	33	33	AY.44	0.000201
ORF1ab/nsp2	237	H237R	cAt	cGt	32	32	AY.3	0.000318
ORF1ab/nsp2	237	H237Y	Cat	Tat	31	31	AY.119	0.001095
ORF1ab/nsp2	237	H237Y	Cat	Tat	30	30	AY.47	0.000933
ORF1ab/nsp2	237	H237Y	Cat	Tat	30	30	AY.9	0.002028
ORF1ab/nsp2	237	H237Y	Cat	Tat	28	28	B.1.177.35	0.01935
ORF1ab/nsp2	237	H237Y	Cat	Tat	27	27	AY.99.2	0.002488
ORF1ab/nsp2	237	H237H	caT	caC	27	27	B.1.617.2	0.000102
ORF1ab/nsp2	237	H237H	caT	caC	27	27	P.1.14	0.001291
ORF1ab/nsp2	237	H237L	cAt	cTt	24	26	All	0.000005
ORF1ab/nsp2	237	H237L	cAT	cTC	2	26	All	0
ORF1ab/nsp2	237	H237Q	caT	caA	24	25	All	0.000005
ORF1ab/nsp2	237	H237Q	caT	caG	1	25	All	0
ORF1ab/nsp2	237	H237Y	Cat	Tat	22	22	AY.5	0.000454
ORF1ab/nsp2	237	H237Y	Cat	Tat	20	20	AY.118	0.001253
ORF1ab/nsp2	237	H237Y	Cat	Tat	20	20	B.1.1.214	0.001109
ORF1ab/nsp2	237	H237R	cAt	cGt	20	20	B.1.36.34	0.425532
ORF1ab/nsp2	237	H237R	cAt	cGt	20	20	B.1.617.2	0.000075
ORF1ab/nsp2	237	H237D	Cat	Gat	19	19	AY.4	0.00003
ORF1ab/nsp2	237	H237Y	Cat	Tat	19	19	B.1.1.377	0.026243
ORF1ab/nsp2	237	H237Y	Cat	Tat	18	18	B.1.243	0.001253
ORF1ab/nsp2	237	H237A	CAt	GCt	17	17	All	0.000003
ORF1ab/nsp2	237	H237A	CAt	GCt	17	17	AY.4	0.000026
ORF1ab/nsp2	237	H237Q	caT	caA	17	17	B.1.111	0.019976
ORF1ab/nsp2	237	H237Y	Cat	Tat	17	17	B.1.177.24	0.022021
ORF1ab/nsp2	237	H237Y	Cat	Tat	17	17	B.1.324	0.027287
ORF1ab/nsp2	237	H237Y	Cat	Tat	17	17	B.1.438.1	0.001823
ORF1ab/nsp2	237	H237Y	Cat	Tat	16	16	AY.5.4	0.004427
ORF1ab/nsp2	237	H237H	caT	caC	16	16	B.1.177	0.000211
ORF1ab/nsp2	237	H237Y	Cat	Tat	16	16	B.1.369	0.004564
ORF1ab/nsp2	237	H237Y	Cat	Tat	15	15	AY.33	0.001002
ORF1ab/nsp2	237	H237H	caT	caC	15	15	AY.7	0.00294
ORF1ab/nsp2	237	H237H	caT	caC	15	15	B.1.177.46	0.013774
ORF1ab/nsp2	237	H237Y	Cat	Tat	15	15	B.1.429	0.000353
ORF1ab/nsp2	237	H237Y	Cat	Tat	14	14	B.1.177.60	0.003058
ORF1ab/nsp2	237	H237Y	Cat	Tat	14	14	B.1.404	0.018229
ORF1ab/nsp2	237	H237Y	Cat	Tat	14	14	B.1.575	0.004248
ORF1ab/nsp2	237	H237Y	Cat	Tat	13	13	AY.114	0.003004
ORF1ab/nsp2	237	H237H	caT	caC	13	13	AY.4.3	0.010943
ORF1ab/nsp2	237	H237Y	Cat	Tat	13	13	AY.98.1	0.00063
ORF1ab/nsp2	237	H237Y	Cat	Tat	13	13	B.1.221	0.000923
ORF1ab/nsp2	237	H237Y	Cat	Tat	13	13	P.1.14	0.000621
ORF1ab/nsp2	237	H237Y	Cat	Tat	12	12	AY.46.6	0.000866
ORF1ab/nsp2	237	H237Y	Cat	Tat	12	12	B.1.1.284	0.001289
ORF1ab/nsp2	237	H237Y	Cat	Tat	12	12	B.1.1.432	0.01519
ORF1ab/nsp2	237	H237Y	Cat	Tat	12	12	B.1.177.52	0.02109
ORF1ab/nsp2	237	H237H	caT	caC	11	11	AY.103	0.000068
ORF1ab/nsp2	237	H237Y	Cat	Tat	11	11	AY.113	0.001566
ORF1ab/nsp2	237	H237H	caT	caC	11	11	AY.88	0.009726
ORF1ab/nsp2	237	H237Y	Cat	Tat	11	11	B.1.1.519	0.000437
ORF1ab/nsp2	237	H237Y	Cat	Tat	11	11	B.1.399	0.021277
ORF1ab/nsp2	237	H237Y	Cat	Tat	11	11	C.37	0.001277
ORF1ab/nsp2	237	H237Y	Cat	Tat	11	11	P.1.16	0.004115
ORF1ab/nsp2	237	H237Y	Cat	Tat	10	10	AY.117	0.000845
ORF1ab/nsp2	237	H237Y	Cat	Tat	10	10	B.1.1.222	0.00204
ORF1ab/nsp2	237	H237Y	Cat	Tat	10	10	B.1.234	0.001319
ORF1ab/nsp2	237	H237N	Cat	Aat	9	9	AY.103	0.000056
ORF1ab/nsp2	237	H237Y	Cat	Tat	9	9	AY.23	0.000628
ORF1ab/nsp2	237	H237Y	Cat	Tat	9	9	AY.29	0.000142
ORF1ab/nsp2	237	H237Y	Cat	Tat	9	9	AY.68	0.002464
ORF1ab/nsp2	237	H237D	Cat	Gat	9	9	B.1.1.7	0.000008
ORF1ab/nsp2	237	H237Y	Cat	Tat	8	8	AY.111	0.001465
ORF1ab/nsp2	237	H237del	CAT	---	8	8	B.1.1.7	0.000007
ORF1ab/nsp2	237	H237L	cAt	cTt	8	8	B.1.1.7	0.000007
ORF1ab/nsp2	237	H237Y	Cat	Tat	8	8	B.1.258	0.000532
ORF1ab/nsp2	237	H237Y	Cat	Tat	8	8	B.1.525	0.000905
ORF1ab/nsp2	237	H237H	caT	caC	8	8	P.1	0.000126
ORF1ab/nsp2	237	H237H	caT	caC	7	7	AY.25	0.000042
ORF1ab/nsp2	237	H237Y	Cat	Tat	7	7	AY.4.2	0.000152
ORF1ab/nsp2	237	H237Y	Cat	Tat	7	7	AY.85	0.00299
ORF1ab/nsp2	237	H237R	cAt	cGt	7	7	B	0.000895
ORF1ab/nsp2	237	H237N	Cat	Aat	7	7	B.1	0.000064
ORF1ab/nsp2	237	H237N	Cat	Aat	7	7	B.1.1.7	0.000006
ORF1ab/nsp2	237	H237Y	Cat	Tat	7	7	B.1.126	0.008929
ORF1ab/nsp2	237	H237H	caT	caC	7	7	B.1.526	0.000165
ORF1ab/nsp2	237	H237Y	Cat	Tat	7	7	B.1.551	0.009032
ORF1ab/nsp2	237	H237Y	Cat	Tat	7	7	B.4	0.015453
ORF1ab/nsp2	237	H237L	cAt	cTt	4	6		0.222222
ORF1ab/nsp2	237	H237R	cAt	cGt	4	6		0.222222
ORF1ab/nsp2	237	H237L	cAT	cTC	2	6		0.111111
ORF1ab/nsp2	237	H237R	cAT	cGC	2	6		0.111111
ORF1ab/nsp2	237	H237F	CAt	TTt	3	6	All	0.000001
ORF1ab/nsp2	237	H237F	CAT	TTC	3	6	All	0.000001
ORF1ab/nsp2	237	H237H	caT	caC	6	6	AY.102	0.000159
ORF1ab/nsp2	237	H237Y	Cat	Tat	6	6	AY.46.5	0.00119
ORF1ab/nsp2	237	H237Y	Cat	Tat	6	6	AY.9.2	0.00022
ORF1ab/nsp2	237	H237R	cAt	cGt	6	6	B.1.1	0.000109
ORF1ab/nsp2	237	H237Y	Cat	Tat	6	6	B.1.1.311	0.002149
ORF1ab/nsp2	237	H237R	cAt	cGt	6	6	B.1.1.519	0.000238
ORF1ab/nsp2	237	H237Y	Cat	Tat	6	6	B.1.177.21	0.000459
ORF1ab/nsp2	237	H237Y	Cat	Tat	6	6	B.1.427	0.000303
ORF1ab/nsp2	237	H237H	caT	caC	6	6	B.1.427	0.000303
ORF1ab/nsp2	237	H237Y	Cat	Tat	6	6	Q.8	0.000989
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	AY.100	0.00023
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	AY.120.2	0.006427
ORF1ab/nsp2	237	H237L	cAt	cTt	5	5	AY.34.1	0.00255
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	AY.42	0.000201
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	AY.45	0.000608
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	B.1.1.525	0.027322
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	B.1.160.16	0.004647
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	B.1.466.2	0.001956
ORF1ab/nsp2	237	H237D	Cat	Gat	5	5	B.1.525	0.000566
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	B.1.621	0.000443
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	B.23	0.01462
ORF1ab/nsp2	237	H237Y	Cat	Tat	5	5	B.40	0.001821
ORF1ab/nsp2	237	H237H	caT	caC	4	4		0.222222
ORF1ab/nsp2	237	H237S	CAT	AGC	2	4		0.111111
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	4		0.111111
ORF1ab/nsp2	237	H237N	CaT	AaC	2	4		0.111111
ORF1ab/nsp2	237	H237S	CAt	AGt	2	4		0.111111
ORF1ab/nsp2	237	H237N	Cat	Aat	2	4		0.111111
ORF1ab/nsp2	237	H237Y	CaT	TaC	2	4		0.111111
ORF1ab/nsp2	237	H237F	CAT	TTC	2	4		0.111111
ORF1ab/nsp2	237	H237F	CAt	TTt	2	4		0.111111
ORF1ab/nsp2	237	H237S	CAT	AGC	2	4	All	0
ORF1ab/nsp2	237	H237S	CAt	AGt	2	4	All	0
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	AY.101	0.001962
ORF1ab/nsp2	237	H237H	caT	caC	4	4	AY.117	0.000338
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	AY.28	0.007561
ORF1ab/nsp2	237	H237R	cAt	cGt	4	4	AY.37	0.001264
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	AY.58	0.00363
ORF1ab/nsp2	237	H237R	cAt	cGt	4	4	AY.59	0.002119
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	AY.6	0.000165
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	AY.7.1	0.000451
ORF1ab/nsp2	237	H237R	cAt	cGt	4	4	B.1.1.214	0.000222
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.1.317	0.001647
ORF1ab/nsp2	237	H237del	CAT	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.1.434	0.001394
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.1.50	0.002716
ORF1ab/nsp2	237	H237H	caT	caC	4	4	B.1.177.12	0.000607
ORF1ab/nsp2	237	H237H	caT	caC	4	4	B.1.311	0.001098
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.389	0.004008
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.509	0.003463
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.596	0.000349
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.628	0.001409
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	B.1.637	0.000292
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	D.2	0.0003
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	P.1.15	0.000929
ORF1ab/nsp2	237	H237Y	Cat	Tat	4	4	Q.4	0.001819
ORF1ab/nsp2	237	H237R	cAt	cGt	3	3	AY.102	0.00008
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.105	0.001929
ORF1ab/nsp2	237	H237R	cAt	cGt	3	3	AY.109	0.002219
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.120	0.000112
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.120.1	0.000963
ORF1ab/nsp2	237	H237R	cAt	cGt	3	3	AY.14	0.000264
ORF1ab/nsp2	237	H237R	cAt	cGt	3	3	AY.25	0.000018
ORF1ab/nsp2	237	H237N	Cat	Aat	3	3	AY.39	0.000074
ORF1ab/nsp2	237	H237H	caT	caC	3	3	AY.43	0.000013
ORF1ab/nsp2	237	H237R	cAt	cGt	2	3	AY.44	0.000012
ORF1ab/nsp2	237	H237R	cAT	cGC	1	3	AY.44	0.000006
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.46.2	0.001906
ORF1ab/nsp2	237	H237H	caT	caC	3	3	AY.5	0.000062
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.52	0.002443
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.54	0.000286
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.75.1	0.000541
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	AY.80	0.003386
ORF1ab/nsp2	237	H237L	cAt	cTt	3	3	B.1	0.000027
ORF1ab/nsp2	237	H237H	caT	caC	3	3	B.1.1	0.000054
ORF1ab/nsp2	237	H237H	caT	caC	3	3	B.1.1.348	0.002389
ORF1ab/nsp2	237	H237del	CAT	---	3	3	B.1.1.348	0.002389
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	B.1.1.466	0.026087
ORF1ab/nsp2	237	H237N	Cat	Aat	3	3	B.1.1.63	0.001157
ORF1ab/nsp2	237	H237Y	Cat	Tat	3	3	B.1.497	0.000944
ORF1ab/nsp2	237	H237R	cAt	cGt	3	3	B.1.620	0.002838
ORF1ab/nsp2	237	H237P	cAt	cCt	2	2	All	0
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.106	0.00067
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	AY.118	0.000125
ORF1ab/nsp2	237	H237H	caT	caC	2	2	AY.119	0.000071
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.12	0.000632
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.120.2.1	0.000997
ORF1ab/nsp2	237	H237N	Cat	Aat	2	2	AY.20	0.000078
ORF1ab/nsp2	237	H237H	caT	caC	2	2	AY.29	0.000032
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	AY.29	0.000032
ORF1ab/nsp2	237	H237del	CAT	---	2	2	AY.4	0.000003
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.4.2.1	0.000298
ORF1ab/nsp2	237	H237Q	caT	caA	2	2	AY.45	0.000243
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	AY.46	0.000208
ORF1ab/nsp2	237	H237N	Cat	Aat	2	2	AY.46	0.000208
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	AY.46.4	0.000329
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.5.3	0.000675
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.59	0.001059
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	AY.61	0.00021
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.63	0.000774
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.74	0.000231
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.77	0.002255
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.88	0.001768
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	AY.9.1	0.000167
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.9.1	0.000167
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	AY.9.2	0.000073
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	AY.91	0.001461
ORF1ab/nsp2	237	H237H	caT	caC	2	2	AY.98	0.000158
ORF1ab/nsp2	237	H237del	CAT	---	2	2	B.1	0.000018
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	B.1	0.000018
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.153	0.002191
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.232	0.00363
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.25	0.001137
ORF1ab/nsp2	237	H237R	cAt	cGt	2	2	B.1.1.28	0.000622
ORF1ab/nsp2	237	H237del	CAT	---	2	2	B.1.1.284	0.000215
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.394	0.04878
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.398	0.006452
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.413	0.013793
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.420	0.002012
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.1.521	0.010695
ORF1ab/nsp2	237	H237H	caT	caC	2	2	B.1.128	0.001271
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.160.30	0.005952
ORF1ab/nsp2	237	H237H	caT	caC	2	2	B.1.177.4	0.000422
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.177.50	0.00939
ORF1ab/nsp2	237	H237N	Cat	Aat	2	2	B.1.2	0.000018
ORF1ab/nsp2	237	H237H	caT	caC	2	2	B.1.2	0.000018
ORF1ab/nsp2	237	H237D	Cat	Gat	2	2	B.1.243	0.000139
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.258.17	0.000208
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.265	0.002541
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.311	0.000549
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.36	0.000292
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.36.1	0.002281
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.582	0.000981
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.617.1	0.000258
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	B.1.620	0.001892
ORF1ab/nsp2	237	H237H	caT	caC	2	2	B.1.621.1	0.001012
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	C.36.3	0.001134
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	N.5	0.003534
ORF1ab/nsp2	237	H237del	CAT	---	2	2	N.6	0.014184
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	P.1.12	0.000968
ORF1ab/nsp2	237	H237Y	Cat	Tat	2	2	P.2	0.000373
ORF1ab/nsp2	237	H237del	CAT	---	2	2	P.2	0.000373
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	A	0.000387
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	A.2	0.000662
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	A.2.2	0.001689
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	A.23.1	0.000704
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AD.2	0.000219
ORF1ab/nsp2	237	H237L	cAt	cTt	1	1	AE.8	0.000489
ORF1ab/nsp2	237	H237I	CAT	ATA	1	1	All	0
ORF1ab/nsp2	237	H237C	CAt	TGt	1	1	All	0
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AT.1	0.005128
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AU.1	0.001266
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AU.2	0.002421
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.100	0.000046
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.101	0.00049
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	AY.105	0.000643
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.109	0.00074
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.118	0.000063
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.119	0.000035
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.120	0.000037
ORF1ab/nsp2	237	H237del	CAT	---	1	1	AY.120	0.000037
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	AY.120	0.000037
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.121	0.000135
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.13	0.000161
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.14	0.000088
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.17	0.008197
ORF1ab/nsp2	237	H237del	CAT	---	1	1	AY.19	0.00114
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.19	0.00114
ORF1ab/nsp2	237	H237D	Cat	Gat	1	1	AY.24	0.000431
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.24	0.000431
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.27	0.000065
ORF1ab/nsp2	237	H237L	cAt	cTt	1	1	AY.3	0.00001
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.3.1	0.000085
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.3.1	0.000085
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.33	0.000067
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.34	0.000097
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.34	0.000097
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.36	0.000148
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.39	0.000025
ORF1ab/nsp2	237	H237L	cAt	cTt	1	1	AY.39	0.000025
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	AY.39.1	0.00004
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.39.1	0.00004
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.39.1	0.00004
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.39.1.1	0.000725
ORF1ab/nsp2	237	H237Q	caT	caA	1	1	AY.4	0.000002
ORF1ab/nsp2	237	H237P	cAt	cCt	1	1	AY.4	0.000002
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.4.1	0.000737
ORF1ab/nsp2	237	H237Q	caT	caA	1	1	AY.4.2	0.000022
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.4.2	0.000022
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.4.2	0.000022
ORF1ab/nsp2	237	H237del	CAT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.4.5	0.000107
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.40	0.000964
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.41	0.000294
ORF1ab/nsp2	237	H237P	cAt	cCt	1	1	AY.42	0.00004
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	AY.43	0.000004
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.43	0.000004
ORF1ab/nsp2	237	H237del	CAT	---	1	1	AY.43	0.000004
ORF1ab/nsp2	237	H237I	CAT	ATA	1	1	AY.44	0.000006
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.46.1	0.001027
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.47	0.000031
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.47	0.000031
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.5	0.000021
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.5.2	0.002463
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.5.3	0.000337
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.5.4	0.000277
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.53	0.000288
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.54	0.000095
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.58	0.000907
ORF1ab/nsp2	237	H237del	CAT	---	1	1	AY.6	0.000041
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.61	0.000105
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.61	0.000105
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.64	0.000595
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.67	0.000464
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.67	0.000464
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.68	0.000274
ORF1ab/nsp2	237	H237Q	caT	caA	1	1	AY.69	0.000187
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.69	0.000187
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.7.1	0.000113
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.7.2	0.000559
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.75	0.000056
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.75	0.000056
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.77	0.001127
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	AY.92	0.000287
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.93	0.000273
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	AY.97	0.001701
ORF1ab/nsp2	237	H237H	caT	caC	1	1	AY.98.1	0.000048
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B	0.000128
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1	0.000009
ORF1ab/nsp2	237	H237Q	caT	caA	1	1	B.1	0.000009
ORF1ab/nsp2	237	H237N	CaT	AaC	1	1	B.1.1	0.000018
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.1	0.000327
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.129	0.009174
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.134	0.011364
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.1.176	0.000439
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.184	0.058824
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.189	0.001513
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.1.198	0.001468
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.219	0.005
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.228	0.003049
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.229	0.005747
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.236	0.006897
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.254	0.011236
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.27	0.00565
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.279	0.001121
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.289	0.002083
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.294	0.001266
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.306	0.000438
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.31	0.066667
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.1.315	0.008475
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.1.326	0.001761
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.33	0.000421
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	B.1.1.348	0.000796
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.370	0.012658
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.375	0.011905
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.385	0.004464
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.1.519	0.00004
ORF1ab/nsp2	237	H237F	CAt	TTt	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	237	H237Q	caT	caG	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.1.70	0.000341
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.111	0.001175
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.140	0.018868
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.143	0.021277
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.157	0.002985
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.160.9	0.007194
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.177	0.000013
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	B.1.177.23	0.003236
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.177.4	0.000211
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.177.51	0.004566
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.177.53	0.002392
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.177.7	0.000165
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.177.73	0.000566
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.177.81	0.000189
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.177.81	0.000189
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.177.86	0.000183
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.199	0.004132
ORF1ab/nsp2	237	H237C	CAt	TGt	1	1	B.1.2	0.000009
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.221	0.000071
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.23	0.006061
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.232	0.000537
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.234	0.000132
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.239	0.001221
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.240	0.000216
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.241	0.000812
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.242	0.018868
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.243	0.00007
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.258.9	0.005
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.336	0.002439
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.351	0.00003
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.351.2	0.000303
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.351.2	0.000303
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.351.3	0.000876
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.36	0.000146
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.361	0.001289
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.371	0.001122
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.380	0.006623
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	B.1.427	0.00005
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.428.2	0.033333
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.429	0.000024
ORF1ab/nsp2	237	H237L	cAt	cTt	1	1	B.1.459	0.004082
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.468	0.005714
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.470	0.001404
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.499	0.00105
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.504	0.03125
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.507	0.011236
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.525	0.000113
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.533	0.009615
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	B.1.537	0.02
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.556	0.007519
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.560	0.00463
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	B.1.561	0.000397
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.561	0.000397
ORF1ab/nsp2	237	H237Q	caT	caA	1	1	B.1.564.1	0.001577
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.575.1	0.002439
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.590	0.004545
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.595	0.000261
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.596	0.000087
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.600	0.005848
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.609	0.000479
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.1.609	0.000479
ORF1ab/nsp2	237	H237N	Cat	Aat	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	237	H237D	Cat	Gat	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	237	H237F	CAT	TTC	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.1.621	0.000089
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.1.628	0.000352
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.81	0.021277
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.1.9.5	0.005682
ORF1ab/nsp2	237	H237H	caT	caC	1	1	B.15	0.017544
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	B.3.1	0.001658
ORF1ab/nsp2	237	H237del	CAT	---	1	1	B.4.4	0.018868
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	B.40	0.000364
ORF1ab/nsp2	237	H237H	caT	caC	1	1	C.37	0.000116
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	P.1	0.000016
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	P.1.17	0.000162
ORF1ab/nsp2	237	H237H	caT	caC	1	1	P.1.4	0.000977
ORF1ab/nsp2	237	H237H	caT	caC	1	1	P.1.7	0.000319
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	P.1.7	0.000319
ORF1ab/nsp2	237	H237R	cAt	cGt	1	1	P.2	0.000187
ORF1ab/nsp2	237	H237del	CAT	---	1	1	Q.1	0.000126
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	Q.3	0.000145
ORF1ab/nsp2	237	H237H	caT	caC	1	1	R.1	0.00009
ORF1ab/nsp2	237	H237Y	Cat	Tat	1	1	S.1	0.00495

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.