CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 236

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2236C236CC416CsyntgCtgT144871448711511-1513
ORF1ab/nsp2236C236delC416deldelTGC---414111511-1513
ORF1ab/nsp2236C236FC416FnonsyntGctTc22180.8181821511-1513
ORF1ab/nsp2236C236FC416FnonsyntGCtTT2240.1818181511-1513
ORF1ab/nsp2236C236SC416SnonsyntGctCc21130.6190481511-1513
ORF1ab/nsp2236C236SC416SnonsynTgcAgc2160.2857141511-1513
ORF1ab/nsp2236C236SC416SnonsyntGCtCG2120.09523811511-1513
ORF1ab/nsp2236C236RC416RnonsynTgcCgc111111511-1513
ORF1ab/nsp2236C236GC416GnonsynTgCGgT840.51511-1513
ORF1ab/nsp2236C236GC416GnonsynTgCGgA820.251511-1513
ORF1ab/nsp2236C236GC416GnonsynTgcGgc820.251511-1513
ORF1ab/nsp2236C236VC416VnonsynTGCGTT740.5714291511-1513
ORF1ab/nsp2236C236VC416VnonsynTGCGTA720.2857141511-1513
ORF1ab/nsp2236C236VC416VnonsynTGCGTG710.1428571511-1513
ORF1ab/nsp2236C236YC416YnonsyntGctAc650.8333331511-1513
ORF1ab/nsp2236C236YC416YnonsyntGCtAT610.1666671511-1513
ORF1ab/nsp2236C236XC416XnonsyntgCtgA4411511-1513
ORF1ab/nsp2236C236WC416WnonsyntgCtgG3311511-1513
ORF1ab/nsp2236C236del1C416del1deltGct-c320.6666671511-1513
ORF1ab/nsp2236C236del1C416del1deltgCtg-310.3333331511-1513
ORF1ab/nsp2236C236LC416LnonsyntGCtTA2211511-1513

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2236C236CtgCtgT1448714487All0.002771
ORF1ab/nsp2236C236CtgCtgT60926092B.1.1770.080217
ORF1ab/nsp2236C236CtgCtgT23752375B.1.1.70.002126
ORF1ab/nsp2236C236CtgCtgT20932093B.1.177.820.999045
ORF1ab/nsp2236C236CtgCtgT13651365B.1.177.870.99345
ORF1ab/nsp2236C236CtgCtgT673673B.1.177.830.997037
ORF1ab/nsp2236C236CtgCtgT211211AY.40.000328
ORF1ab/nsp2236C236CtgCtgT143143B.1.177.840.953333
ORF1ab/nsp2236C236CtgCtgT138138AY.1030.000857
ORF1ab/nsp2236C236CtgCtgT125125B.10.001145
ORF1ab/nsp2236C236CtgCtgT7979B.1.177.880.975309
ORF1ab/nsp2236C236CtgCtgT7272B.1.617.20.000271
ORF1ab/nsp2236C236CtgCtgT5555AY.430.000244
ORF1ab/nsp2236C236CtgCtgT5555B.1.1600.001715
ORF1ab/nsp2236C236CtgCtgT4949B.1.1.5190.001946
ORF1ab/nsp2236C236CtgCtgT4646AY.420.001851
ORF1ab/nsp2236C236delTGC---4141All0.000008
ORF1ab/nsp2236C236CtgCtgT4141B.1.177.891
ORF1ab/nsp2236C236CtgCtgT3636B.1.2320.019344
ORF1ab/nsp2236C236CtgCtgT3535B.1.160.300.104167
ORF1ab/nsp2236C236CtgCtgT3434AY.250.000205
ORF1ab/nsp2236C236CtgCtgT3333B.1.177.100.028973
ORF1ab/nsp2236C236CtgCtgT3232AY.1000.001472
ORF1ab/nsp2236C236CtgCtgT3131B.1.20.000273
ORF1ab/nsp2236C236CtgCtgT3131B.1.2580.002063
ORF1ab/nsp2236C236CtgCtgT3030AY.1020.000795
ORF1ab/nsp2236C236CtgCtgT2929AY.5.40.008024
ORF1ab/nsp2236C236CtgCtgT2727AY.50.000558
ORF1ab/nsp2236C236CtgCtgT2525AY.440.000152
ORF1ab/nsp2236C236FtGctTc1822All0.000003
ORF1ab/nsp2236C236FtGCtTT422All0.000001
ORF1ab/nsp2236C236CtgCtgT2222AY.30.000219
ORF1ab/nsp2236C236StGctCc1321All0.000002
ORF1ab/nsp2236C236STgcAgc621All0.000001
ORF1ab/nsp2236C236StGCtCG221All0
ORF1ab/nsp2236C236CtgCtgT2121AY.610.0022
ORF1ab/nsp2236C236CtgCtgT1919AY.920.005458
ORF1ab/nsp2236C236CtgCtgT1919B.1.177.690.02819
ORF1ab/nsp2236C236CtgCtgT1919B.1.2430.001322
ORF1ab/nsp2236C236CtgCtgT1818AY.1200.000669
ORF1ab/nsp2236C236CtgCtgT1616B.1.177.160.010631
ORF1ab/nsp2236C236CtgCtgT1515AY.200.000583
ORF1ab/nsp2236C236CtgCtgT1515B.1.10.000272
ORF1ab/nsp2236C236CtgCtgT1414R.10.00126
ORF1ab/nsp2236C236CtgCtgT1313AY.260.000368
ORF1ab/nsp2236C236CtgCtgT1212AY.390.000297
ORF1ab/nsp2236C236RTgcCgc1111All0.000002
ORF1ab/nsp2236C236CtgCtgT1111AY.460.001145
ORF1ab/nsp2236C236CtgCtgT1010AY.1190.000353
ORF1ab/nsp2236C236CtgCtgT1010AY.290.000158
ORF1ab/nsp2236C236CtgCtgT1010B.1.2210.00071
ORF1ab/nsp2236C236CtgCtgT99B.1.177.330.014803
ORF1ab/nsp2236C236CtgCtgT99P.10.000142
ORF1ab/nsp2236C236GTgCGgT48All0.000001
ORF1ab/nsp2236C236GTgcGgc28All0
ORF1ab/nsp2236C236GTgCGgA28All0
ORF1ab/nsp2236C236delTGC---88B.1.1.70.000007
ORF1ab/nsp2236C236VTGCGTT47All0.000001
ORF1ab/nsp2236C236VTGCGTA27All0
ORF1ab/nsp2236C236VTGCGTG17All0
ORF1ab/nsp2236C236CtgCtgT77AY.99.20.000645
ORF1ab/nsp2236C236CtgCtgT77B.1.177.230.022654
ORF1ab/nsp2236C236CtgCtgT77B.1.4270.000353
ORF1ab/nsp2236C236GTgCGgT460.222222
ORF1ab/nsp2236C236VTGCGTT460.222222
ORF1ab/nsp2236C236GTgCGgA260.111111
ORF1ab/nsp2236C236VTGCGTA260.111111
ORF1ab/nsp2236C236YtGctAc56All0.000001
ORF1ab/nsp2236C236YtGCtAT16All0
ORF1ab/nsp2236C236CtgCtgT66AY.470.000187
ORF1ab/nsp2236C236CtgCtgT66AY.570.003937
ORF1ab/nsp2236C236FtGctTc66B.1.1.70.000005
ORF1ab/nsp2236C236CtgCtgT66B.1.258.170.000624
ORF1ab/nsp2236C236CtgCtgT66B.1.3510.000178
ORF1ab/nsp2236C236CtgCtgT66B.1.4290.000141
ORF1ab/nsp2236C236CtgCtgT55AY.230.000349
ORF1ab/nsp2236C236CtgCtgT55AY.98.10.000242
ORF1ab/nsp2236C236CtgCtgT55B.1.1.2550.015152
ORF1ab/nsp2236C236StGctCc35B.1.1.70.000003
ORF1ab/nsp2236C236STgcAgc25B.1.1.70.000002
ORF1ab/nsp2236C236CtgCtgT55B.1.5260.000118
ORF1ab/nsp2236C236CtgCtgT440.222222
ORF1ab/nsp2236C236FtGCtTT440.222222
ORF1ab/nsp2236C236StGCtCG240.111111
ORF1ab/nsp2236C236StGctCc240.111111
ORF1ab/nsp2236C236XtgCtgA44All0.000001
ORF1ab/nsp2236C236CtgCtgT44AY.1180.000251
ORF1ab/nsp2236C236CtgCtgT44AY.980.000316
ORF1ab/nsp2236C236delTGC---44B.1.1.330.001684
ORF1ab/nsp2236C236CtgCtgT44B.1.1.390.002039
ORF1ab/nsp2236C236CtgCtgT44B.1.177.440.002076
ORF1ab/nsp2236C236CtgCtgT44B.1.177.60.003906
ORF1ab/nsp2236C236CtgCtgT44B.1.177.650.002661
ORF1ab/nsp2236C236CtgCtgT44B.1.360.000584
ORF1ab/nsp2236C236CtgCtgT44B.1.6210.000354
ORF1ab/nsp2236C236CtgCtgT44C.370.000464
ORF1ab/nsp2236C236CtgCtgT44Q.10.000505
ORF1ab/nsp2236C236WtgCtgG33All0.000001
ORF1ab/nsp2236C236del1tGct-c23All0
ORF1ab/nsp2236C236del1tgCtg-13All0
ORF1ab/nsp2236C236CtgCtgT33AY.1100.000338
ORF1ab/nsp2236C236CtgCtgT33AY.1170.000254
ORF1ab/nsp2236C236CtgCtgT33AY.3.10.000256
ORF1ab/nsp2236C236CtgCtgT33AY.820.004071
ORF1ab/nsp2236C236CtgCtgT33AY.830.005172
ORF1ab/nsp2236C236CtgCtgT33B0.000383
ORF1ab/nsp2236C236FtGctTc33B.10.000027
ORF1ab/nsp2236C236StGctCc23B.10.000018
ORF1ab/nsp2236C236STgcAgc13B.10.000009
ORF1ab/nsp2236C236CtgCtgT33B.1.1.2970.006711
ORF1ab/nsp2236C236delTGC---33B.1.1.3480.002389
ORF1ab/nsp2236C236CtgCtgT33B.1.1.5180.018987
ORF1ab/nsp2236C236CtgCtgT33B.1.177.170.002463
ORF1ab/nsp2236C236CtgCtgT33B.1.177.40.000633
ORF1ab/nsp2236C236CtgCtgT33B.1.177.630.008108
ORF1ab/nsp2236C236CtgCtgT33B.1.177.80.002257
ORF1ab/nsp2236C236CtgCtgT33B.1.177.810.000568
ORF1ab/nsp2236C236CtgCtgT33B.1.177.90.003995
ORF1ab/nsp2236C236CtgCtgT33B.1.2140.010989
ORF1ab/nsp2236C236CtgCtgT33B.1.5270.011111
ORF1ab/nsp2236C236CtgCtgT33P.1.140.000143
ORF1ab/nsp2236C236CtgCtgT33P.1.60.005837
ORF1ab/nsp2236C236LtGCtTA220.111111
ORF1ab/nsp2236C236WtgCtgG220.111111
ORF1ab/nsp2236C236XtgCtgA220.111111
ORF1ab/nsp2236C236LtGCtTA22All0
ORF1ab/nsp2236C236CtgCtgT22AY.1070.000932
ORF1ab/nsp2236C236CtgCtgT22AY.16.10.00094
ORF1ab/nsp2236C236CtgCtgT22AY.350.000466
ORF1ab/nsp2236C236CtgCtgT22AY.39.20.003082
ORF1ab/nsp2236C236delTGC---22AY.40.000003
ORF1ab/nsp2236C236CtgCtgT22AY.730.001331
ORF1ab/nsp2236C236CtgCtgT22AY.90.000135
ORF1ab/nsp2236C236CtgCtgT22AY.940.000885
ORF1ab/nsp2236C236RTgcCgc22B.10.000018
ORF1ab/nsp2236C236delTGC---22B.10.000018
ORF1ab/nsp2236C236RTgcCgc22B.1.10.000036
ORF1ab/nsp2236C236delTGC---22B.1.1.2840.000215
ORF1ab/nsp2236C236CtgCtgT22B.1.1.500.001358
ORF1ab/nsp2236C236CtgCtgT22B.1.177.730.001133
ORF1ab/nsp2236C236CtgCtgT22B.1.177.860.000367
ORF1ab/nsp2236C236StGctCc12B.1.20.000009
ORF1ab/nsp2236C236STgcAgc12B.1.20.000009
ORF1ab/nsp2236C236CtgCtgT22B.1.2340.000264
ORF1ab/nsp2236C236CtgCtgT22B.1.3050.004301
ORF1ab/nsp2236C236CtgCtgT22B.1.36.290.001035
ORF1ab/nsp2236C236CtgCtgT22B.1.36.390.004435
ORF1ab/nsp2236C236CtgCtgT22B.1.5750.000607
ORF1ab/nsp2236C236CtgCtgT22B.1.6090.000959
ORF1ab/nsp2236C236delTGC---22N.60.014184
ORF1ab/nsp2236C236delTGC---22P.20.000373
ORF1ab/nsp2236C236YtGctAc11A.10.000282
ORF1ab/nsp2236C236FtGctTc11A.10.000282
ORF1ab/nsp2236C236CtgCtgT11A.20.000662
ORF1ab/nsp2236C236CtgCtgT11AE.80.000489
ORF1ab/nsp2236C236CtgCtgT11AN.10.02
ORF1ab/nsp2236C236CtgCtgT11AY.1040.001984
ORF1ab/nsp2236C236CtgCtgT11AY.1130.000142
ORF1ab/nsp2236C236YtGctAc11AY.1170.000085
ORF1ab/nsp2236C236del1tgCtg-11AY.1180.000063
ORF1ab/nsp2236C236delTGC---11AY.1200.000037
ORF1ab/nsp2236C236CtgCtgT11AY.1210.000135
ORF1ab/nsp2236C236delTGC---11AY.190.00114
ORF1ab/nsp2236C236CtgCtgT11AY.300.000396
ORF1ab/nsp2236C236CtgCtgT11AY.320.000532
ORF1ab/nsp2236C236CtgCtgT11AY.34.10.00051
ORF1ab/nsp2236C236CtgCtgT11AY.370.000316
ORF1ab/nsp2236C236FtGctTc11AY.390.000025
ORF1ab/nsp2236C236STgcAgc11AY.40.000002
ORF1ab/nsp2236C236FtGctTc11AY.40.000002
ORF1ab/nsp2236C236delTGC---11AY.4.50.000107
ORF1ab/nsp2236C236FtGctTc11AY.430.000004
ORF1ab/nsp2236C236delTGC---11AY.430.000004
ORF1ab/nsp2236C236YtGctAc11AY.440.000006
ORF1ab/nsp2236C236FtGctTc11AY.440.000006
ORF1ab/nsp2236C236del1tGct-c11AY.440.000006
ORF1ab/nsp2236C236CtgCtgT11AY.450.000122
ORF1ab/nsp2236C236CtgCtgT11AY.46.60.000072
ORF1ab/nsp2236C236YtGctAc11AY.470.000031
ORF1ab/nsp2236C236CtgCtgT11AY.540.000095
ORF1ab/nsp2236C236CtgCtgT11AY.560.001605
ORF1ab/nsp2236C236delTGC---11AY.60.000041
ORF1ab/nsp2236C236CtgCtgT11AY.60.000041
ORF1ab/nsp2236C236CtgCtgT11AY.650.000533
ORF1ab/nsp2236C236GTgcGgc11AY.680.000274
ORF1ab/nsp2236C236VTGCGTG11AY.690.000187
ORF1ab/nsp2236C236RTgcCgc11AY.7.10.000113
ORF1ab/nsp2236C236CtgCtgT11AY.840.000437
ORF1ab/nsp2236C236CtgCtgT11AY.870.000833
ORF1ab/nsp2236C236CtgCtgT11AY.880.000884
ORF1ab/nsp2236C236CtgCtgT11AY.9.10.000084
ORF1ab/nsp2236C236CtgCtgT11AY.9.20.000037
ORF1ab/nsp2236C236CtgCtgT11AY.930.000273
ORF1ab/nsp2236C236StGctCc11B0.000128
ORF1ab/nsp2236C236XtgCtgA11B.10.000009
ORF1ab/nsp2236C236WtgCtgG11B.1.10.000018
ORF1ab/nsp2236C236CtgCtgT11B.1.1.120.007463
ORF1ab/nsp2236C236CtgCtgT11B.1.1.2070.001182
ORF1ab/nsp2236C236CtgCtgT11B.1.1.2220.000204
ORF1ab/nsp2236C236CtgCtgT11B.1.1.2360.006897
ORF1ab/nsp2236C236CtgCtgT11B.1.1.250.000569
ORF1ab/nsp2236C236FtGctTc11B.1.1.2690.001353
ORF1ab/nsp2236C236delTGC---11B.1.1.3150.008475
ORF1ab/nsp2236C236CtgCtgT11B.1.1.3180.000302
ORF1ab/nsp2236C236CtgCtgT11B.1.1.330.000421
ORF1ab/nsp2236C236CtgCtgT11B.1.1.3330.001076
ORF1ab/nsp2236C236CtgCtgT11B.1.1.370.000193
ORF1ab/nsp2236C236CtgCtgT11B.1.1.630.000386
ORF1ab/nsp2236C236RTgcCgc11B.1.1.70.000001
ORF1ab/nsp2236C236CtgCtgT11B.1.1040.00369
ORF1ab/nsp2236C236delTGC---11B.1.110.30.000718
ORF1ab/nsp2236C236StGctCc11B.1.1280.000635
ORF1ab/nsp2236C236delTGC---11B.1.1400.018868
ORF1ab/nsp2236C236CtgCtgT11B.1.160.320.004292
ORF1ab/nsp2236C236CtgCtgT11B.1.177.30.007634
ORF1ab/nsp2236C236CtgCtgT11B.1.177.310.011494
ORF1ab/nsp2236C236CtgCtgT11B.1.177.350.000691
ORF1ab/nsp2236C236CtgCtgT11B.1.177.400.005155
ORF1ab/nsp2236C236CtgCtgT11B.1.177.430.001477
ORF1ab/nsp2236C236CtgCtgT11B.1.177.470.012987
ORF1ab/nsp2236C236delTGC---11B.1.177.510.004566
ORF1ab/nsp2236C236CtgCtgT11B.1.177.520.001757
ORF1ab/nsp2236C236StGctCc11B.1.177.530.002392
ORF1ab/nsp2236C236CtgCtgT11B.1.177.560.000668
ORF1ab/nsp2236C236CtgCtgT11B.1.177.720.00339
ORF1ab/nsp2236C236delTGC---11B.1.177.730.000566
ORF1ab/nsp2236C236FtGctTc11B.1.177.860.000183
ORF1ab/nsp2236C236RTgcCgc11B.1.20.000009
ORF1ab/nsp2236C236FtGctTc11B.1.20.000009
ORF1ab/nsp2236C236CtgCtgT11B.1.2220.001692
ORF1ab/nsp2236C236StGctCc11B.1.2220.001692
ORF1ab/nsp2236C236CtgCtgT11B.1.2390.001221
ORF1ab/nsp2236C236CtgCtgT11B.1.2400.000216
ORF1ab/nsp2236C236CtgCtgT11B.1.2410.000812
ORF1ab/nsp2236C236delTGC---11B.1.2420.018868
ORF1ab/nsp2236C236RTgcCgc11B.1.2580.000067
ORF1ab/nsp2236C236CtgCtgT11B.1.258.190.007092
ORF1ab/nsp2236C236CtgCtgT11B.1.2600.003344
ORF1ab/nsp2236C236CtgCtgT11B.1.2980.002114
ORF1ab/nsp2236C236CtgCtgT11B.1.3490.000715
ORF1ab/nsp2236C236RTgcCgc11B.1.3510.00003
ORF1ab/nsp2236C236YtGctAc11B.1.36.100.004785
ORF1ab/nsp2236C236CtgCtgT11B.1.36.370.002778
ORF1ab/nsp2236C236CtgCtgT11B.1.3690.000285
ORF1ab/nsp2236C236RTgcCgc11B.1.4000.000429
ORF1ab/nsp2236C236delTGC---11B.1.4290.000024
ORF1ab/nsp2236C236CtgCtgT11B.1.438.10.000107
ORF1ab/nsp2236C236CtgCtgT11B.1.466.10.007194
ORF1ab/nsp2236C236XtgCtgA11B.1.466.20.000391
ORF1ab/nsp2236C236STgcAgc11B.1.4800.002488
ORF1ab/nsp2236C236CtgCtgT11B.1.4990.00105
ORF1ab/nsp2236C236CtgCtgT11B.1.5330.009615
ORF1ab/nsp2236C236del1tGct-c11B.1.5900.004545
ORF1ab/nsp2236C236CtgCtgT11B.1.5950.000261
ORF1ab/nsp2236C236RTgcCgc11B.1.617.20.000004
ORF1ab/nsp2236C236delTGC---11B.1.617.20.000004
ORF1ab/nsp2236C236StGctCc11B.1.617.20.000004
ORF1ab/nsp2236C236YtGCtAT11B.1.617.20.000004
ORF1ab/nsp2236C236delTGC---11B.1.6210.000089
ORF1ab/nsp2236C236CtgCtgT11B.1.6280.000352
ORF1ab/nsp2236C236CtgCtgT11B.1.6370.000073
ORF1ab/nsp2236C236delTGC---11B.4.40.018868
ORF1ab/nsp2236C236CtgCtgT11C.140.004329
ORF1ab/nsp2236C236CtgCtgT11D.20.000075
ORF1ab/nsp2236C236FtGctTc11D.20.000075
ORF1ab/nsp2236C236CtgCtgT11N.60.007092
ORF1ab/nsp2236C236CtgCtgT11P.1.100.000269
ORF1ab/nsp2236C236CtgCtgT11P.1.120.000484
ORF1ab/nsp2236C236CtgCtgT11P.1.150.000232
ORF1ab/nsp2236C236CtgCtgT11P.1.70.000319
ORF1ab/nsp2236C236CtgCtgT11P.20.000187
ORF1ab/nsp2236C236CtgCtgT11P.30.001595
ORF1ab/nsp2236C236delTGC---11Q.10.000126
ORF1ab/nsp2236C236GTgcGgc11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.