CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 230 | V230V | V410V | syn | gtG | gtT | 5332 | 4692 | 0.87997 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230V | V410V | syn | gtG | gtA | 5332 | 623 | 0.116842 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230V | V410V | syn | gtG | gtC | 5332 | 17 | 0.0031883 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230A | V410A | nonsyn | gTg | gCg | 668 | 668 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230M | V410M | nonsyn | Gtg | Atg | 150 | 150 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230L | V410L | nonsyn | Gtg | Ttg | 68 | 61 | 0.897059 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230L | V410L | nonsyn | Gtg | Ctg | 68 | 7 | 0.102941 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230del | V410del | del | GTG | --- | 42 | 42 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230E | V410E | nonsyn | gTg | gAg | 5 | 4 | 0.8 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230E | V410E | nonsyn | gTG | gAA | 5 | 1 | 0.2 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230del1 | V410del1 | del | gtG | gt- | 3 | 3 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230K | V410K | nonsyn | GTg | AAg | 2 | 2 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230I | V410I | nonsyn | GtG | AtC | 2 | 2 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230D | V410D | nonsyn | gTG | gAC | 2 | 2 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230N | V410N | nonsyn | GTG | AAC | 2 | 2 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230del2 | V410del2 | del | gTG | g-- | 1 | 1 | 1 | 1493-1495 |
ORF1ab/nsp2 | 230 | V230F | V410F | nonsyn | GtG | TtT | 1 | 1 | 1 | 1493-1495 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4692 | 5332 | All | 0.000897 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 623 | 5332 | All | 0.000119 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 17 | 5332 | All | 0.000003 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1721 | 1721 | AY.102 | 0.045631 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 668 | 668 | All | 0.000128 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 489 | 625 | B.1.1.7 | 0.000438 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 135 | 625 | B.1.1.7 | 0.000121 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 625 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 541 | 541 | AY.39 | 0.013369 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 290 | 499 | AY.4 | 0.000451 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 209 | 499 | AY.4 | 0.000325 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 357 | 357 | B.1.36.37 | 0.991667 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 234 | 243 | AY.103 | 0.001453 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 9 | 243 | AY.103 | 0.000056 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 193 | 193 | B.1.234 | 0.025465 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 150 | 150 | All | 0.000029 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 128 | 137 | B.1.617.2 | 0.000482 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 9 | 137 | B.1.617.2 | 0.000034 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 121 | 121 | B.1.177.42 | 0.108229 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 116 | 116 | B.1.596 | 0.010108 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 106 | 106 | B.1.1.453 | 0.898305 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 104 | 105 | B.1.427 | 0.005252 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 105 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 88 | 97 | AY.44 | 0.000536 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 8 | 97 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 97 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 82 | 84 | AY.29 | 0.001293 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 2 | 84 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 79 | 79 | B.1.355 | 0.877778 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 74 | 77 | AY.25 | 0.000445 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 3 | 77 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 61 | 68 | All | 0.000012 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ctg | 7 | 68 | All | 0.000001 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 47 | 50 | B.1 | 0.00043 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 3 | 50 | B.1 | 0.000027 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 36 | 46 | P.1 | 0.000567 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 10 | 46 | P.1 | 0.000158 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 42 | 42 | All | 0.000008 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 30 | 42 | AY.43 | 0.000133 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 11 | 42 | AY.43 | 0.000049 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 42 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 26 | 34 | B.1.429 | 0.000612 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 5 | 34 | B.1.429 | 0.000118 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 3 | 34 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 32 | 32 | B.1.177.60 | 0.00699 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 30 | 30 | B.1.617.2 | 0.000113 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 29 | 29 | AY.120 | 0.001078 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 28 | 28 | B.1.112 | 0.145078 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 27 | 27 | B.1.1.228 | 0.082317 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 23 | 23 | AY.33 | 0.001536 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 19 | 23 | B.1.526 | 0.000447 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4 | 23 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 18 | 21 | B.1.351 | 0.000535 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 3 | 21 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 16 | 20 | C.37 | 0.001857 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4 | 20 | C.37 | 0.000464 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 10 | 19 | AY.3 | 0.000099 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 8 | 19 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 19 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 18 | 18 | AY.9.2 | 0.000661 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 17 | 18 | B.1.2 | 0.00015 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 18 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 12 | 15 | B.1.1.519 | 0.000477 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 3 | 15 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 11 | 13 | B.1.177 | 0.000145 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 2 | 13 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 10 | 11 | B.1.1 | 0.000181 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 11 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 7 | 10 | AY.26 | 0.000198 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 3 | 10 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 10 | 10 | P.1 | 0.000158 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 9 | 9 | AY.9.1 | 0.000754 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 7 | 7 | AY.117 | 0.000592 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 7 | 7 | AY.37 | 0.002212 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4 | 7 | AY.5 | 0.000083 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 3 | 7 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 7 | 7 | AY.58 | 0.006352 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 5 | 6 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 6 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 6 | 6 | AY.87 | 0.004996 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 6 | 6 | AY.95 | 0.004566 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 6 | 6 | AZ.4 | 0.020134 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 6 | 6 | B.1.301 | 0.035503 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp2 | 230 | V230E | gTg | gAg | 4 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 230 | V230E | gTG | gAA | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 5 | B.1.623 | 0.001609 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 2 | 5 | B.1.623 | 0.001073 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 4 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 4 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 4 | AY.42 | 0.000121 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 4 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 4 | 4 | B.1.221.2 | 0.016064 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 4 | B.1.609 | 0.001438 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 4 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ctg | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp2 | 230 | V230del1 | gtG | gt- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 2 | 3 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 3 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 3 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 2 | 3 | AY.7.1 | 0.000225 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 3 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | B.1.1.243 | 0.012245 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 2 | 3 | B.1.1.318 | 0.000604 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 3 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230E | gTg | gAg | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230N | GTG | AAC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230I | GtG | AtC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230K | GTg | AAg | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230D | gTG | gAC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp2 | 230 | V230D | gTG | gAC | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 230 | V230I | GtG | AtC | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 230 | V230K | GTg | AAg | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 230 | V230N | GTG | AAC | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.1.368 | 0.006173 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.177.20 | 0.003035 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.319 | 0.006098 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 2 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 230 | V230del2 | gTG | g-- | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 230 | V230F | GtG | TtT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ctg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ctg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 230 | V230del1 | gtG | gt- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 230 | V230E | gTg | gAg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 230 | V230E | gTG | gAA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 230 | V230E | gTg | gAg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 230 | V230del1 | gtG | gt- | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ctg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 230 | V230del2 | gTG | g-- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 230 | V230del1 | gtG | gt- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 230 | V230F | GtG | TtT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.313 | 0.006579 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ctg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | B.1.550 | 0.013699 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ctg | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp2 | 230 | V230A | gTg | gCg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtA | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 230 | V230V | gtG | gtT | 1 | 1 | P.4 | 0.003802 |
ORF1ab/nsp2 | 230 | V230del | GTG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 230 | V230L | Gtg | Ttg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 230 | V230M | Gtg | Atg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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