CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 23 | D23N | D203N | nonsyn | Gac | Aac | 5565 | 5555 | 0.998203 | 872-874 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 5555 | 5565 | All | 0.001062 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2176 | 2181 | B.1.1.7 | 0.001948 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1703 | 1707 | B.1.1.317 | 0.701112 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 424 | 424 | B.1.2 | 0.003733 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 115 | 115 | B.1.1.288 | 0.220307 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 103 | 103 | B.1.1.63 | 0.039738 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 96 | 96 | B.1.351 | 0.002854 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 64 | 64 | AS.2 | 1 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 64 | 64 | B.1.617.2 | 0.000241 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 60 | 61 | B.1 | 0.00055 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 57 | 57 | AY.25 | 0.000343 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 56 | 56 | AY.4 | 0.000087 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 55 | 55 | B.1.1 | 0.000998 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 48 | 48 | AY.116 | 0.013765 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 42 | 42 | AY.44 | 0.000256 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 37 | 37 | AY.33 | 0.002471 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 31 | 31 | B.1.91 | 0.064315 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 27 | 27 | B.1.177 | 0.000356 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 25 | 25 | AY.43 | 0.000111 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 25 | 25 | B.1.177.81 | 0.004733 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 21 | 21 | C.37 | 0.002437 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 12 | 12 | AY.19 | 0.013683 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 12 | 12 | AY.9.2 | 0.000441 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 8 | 8 | B.1.1.161 | 0.028269 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 8 | 8 | C.16 | 0.008484 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 7 | 7 | B.1.417 | 0.2 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 6 | 6 | AY.39.1 | 0.000238 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | AY.97 | 0.006803 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | B.1.36.25 | 0.00883 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | B.1.351.1 | 0.115385 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | AY.24 | 0.000862 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B.1.1.370 | 0.025316 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B.1.1.429 | 0.009217 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | P.1.10.1 | 0.01626 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 23 | D23N | Gac | Aac | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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