CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 23

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	23	D23N	D203N	nonsyn	Gac	Aac	5565	5555	0.998203	872-874
ORF1ab/nsp2	23	D23N	D203N	nonsyn	GaC	AaT	5565	10	0.00179695	872-874
ORF1ab/nsp2	23	D23D	D203D	syn	gaC	gaT	3001	3001	1	872-874
ORF1ab/nsp2	23	D23Y	D203Y	nonsyn	Gac	Tac	1522	1522	1	872-874
ORF1ab/nsp2	23	D23G	D203G	nonsyn	gAc	gGc	168	168	1	872-874
ORF1ab/nsp2	23	D23E	D203E	nonsyn	gaC	gaA	66	63	0.954545	872-874
ORF1ab/nsp2	23	D23E	D203E	nonsyn	gaC	gaG	66	3	0.0454545	872-874
ORF1ab/nsp2	23	D23del	D203del	del	GAC	---	45	45	1	872-874
ORF1ab/nsp2	23	D23H	D203H	nonsyn	Gac	Cac	21	21	1	872-874
ORF1ab/nsp2	23	D23A	D203A	nonsyn	gAc	gCc	9	9	1	872-874
ORF1ab/nsp2	23	D23del1	D203del1	del	gaC	ga-	4	3	0.75	872-874
ORF1ab/nsp2	23	D23del1	D203del1	del	Gac	-ac	4	1	0.25	872-874
ORF1ab/nsp2	23	D23P	D203P	nonsyn	GAc	CCc	1	1	1	872-874
ORF1ab/nsp2	23	D23V	D203V	nonsyn	gAc	gTc	1	1	1	872-874
ORF1ab/nsp2	23	D23del2	D203del2	del	gAC	g--	1	1	1	872-874

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	23	D23N	Gac	Aac	5555	5565	All	0.001062
ORF1ab/nsp2	23	D23N	GaC	AaT	10	5565	All	0.000002
ORF1ab/nsp2	23	D23D	gaC	gaT	3001	3001	All	0.000574
ORF1ab/nsp2	23	D23N	Gac	Aac	2176	2181	B.1.1.7	0.001948
ORF1ab/nsp2	23	D23N	GaC	AaT	5	2181	B.1.1.7	0.000004
ORF1ab/nsp2	23	D23N	Gac	Aac	1703	1707	B.1.1.317	0.701112
ORF1ab/nsp2	23	D23N	GaC	AaT	4	1707	B.1.1.317	0.001647
ORF1ab/nsp2	23	D23Y	Gac	Tac	1522	1522	All	0.000291
ORF1ab/nsp2	23	D23D	gaC	gaT	629	629	B.1.1.7	0.000563
ORF1ab/nsp2	23	D23Y	Gac	Tac	506	506	B.1.1.198	0.743025
ORF1ab/nsp2	23	D23N	Gac	Aac	424	424	B.1.2	0.003733
ORF1ab/nsp2	23	D23D	gaC	gaT	407	407	AY.103	0.002527
ORF1ab/nsp2	23	D23Y	Gac	Tac	253	253	AY.4	0.000394
ORF1ab/nsp2	23	D23Y	Gac	Tac	213	213	B.1.1.7	0.000191
ORF1ab/nsp2	23	D23G	gAc	gGc	168	168	All	0.000032
ORF1ab/nsp2	23	D23D	gaC	gaT	163	163	AY.4	0.000254
ORF1ab/nsp2	23	D23D	gaC	gaT	134	134	B.1.2	0.00118
ORF1ab/nsp2	23	D23D	gaC	gaT	120	120	AY.9.2	0.004408
ORF1ab/nsp2	23	D23N	Gac	Aac	115	115	B.1.1.288	0.220307
ORF1ab/nsp2	23	D23D	gaC	gaT	113	113	B.1.620	0.106906
ORF1ab/nsp2	23	D23D	gaC	gaT	105	105	B.1.243	0.007306
ORF1ab/nsp2	23	D23N	Gac	Aac	103	103	B.1.1.63	0.039738
ORF1ab/nsp2	23	D23N	Gac	Aac	96	96	B.1.351	0.002854
ORF1ab/nsp2	23	D23Y	Gac	Tac	89	89	B.1	0.000815
ORF1ab/nsp2	23	D23Y	Gac	Tac	87	87	AY.5	0.001796
ORF1ab/nsp2	23	D23D	gaC	gaT	74	74	B.1	0.000678
ORF1ab/nsp2	23	D23D	gaC	gaT	72	72	AY.4.2	0.001562
ORF1ab/nsp2	23	D23D	gaC	gaT	71	71	B.1.617.2	0.000267
ORF1ab/nsp2	23	D23E	gaC	gaA	63	66	All	0.000012
ORF1ab/nsp2	23	D23E	gaC	gaG	3	66	All	0.000001
ORF1ab/nsp2	23	D23N	Gac	Aac	64	64	AS.2	1
ORF1ab/nsp2	23	D23N	Gac	Aac	64	64	B.1.617.2	0.000241
ORF1ab/nsp2	23	D23N	Gac	Aac	60	61	B.1	0.00055
ORF1ab/nsp2	23	D23N	GaC	AaT	1	61	B.1	0.000009
ORF1ab/nsp2	23	D23N	Gac	Aac	57	57	AY.25	0.000343
ORF1ab/nsp2	23	D23D	gaC	gaT	56	56	AY.23.1	0.023372
ORF1ab/nsp2	23	D23N	Gac	Aac	56	56	AY.4	0.000087
ORF1ab/nsp2	23	D23N	Gac	Aac	55	55	B.1.1	0.000998
ORF1ab/nsp2	23	D23D	gaC	gaT	50	50	AY.3	0.000497
ORF1ab/nsp2	23	D23N	Gac	Aac	48	48	AY.116	0.013765
ORF1ab/nsp2	23	D23D	gaC	gaT	46	46	AY.43	0.000204
ORF1ab/nsp2	23	D23del	GAC	---	45	45	All	0.000009
ORF1ab/nsp2	23	D23D	gaC	gaT	44	44	AY.29	0.000694
ORF1ab/nsp2	23	D23D	gaC	gaT	42	42	AY.44	0.000256
ORF1ab/nsp2	23	D23N	Gac	Aac	42	42	AY.44	0.000256
ORF1ab/nsp2	23	D23Y	Gac	Tac	41	41	P.1	0.000646
ORF1ab/nsp2	23	D23D	gaC	gaT	39	39	AY.121	0.005277
ORF1ab/nsp2	23	D23G	gAc	gGc	39	39	AY.43	0.000173
ORF1ab/nsp2	23	D23Y	Gac	Tac	39	39	AY.44	0.000237
ORF1ab/nsp2	23	D23D	gaC	gaT	39	39	AY.6	0.001604
ORF1ab/nsp2	23	D23N	Gac	Aac	37	37	AY.33	0.002471
ORF1ab/nsp2	23	D23D	gaC	gaT	37	37	B.1.160	0.001154
ORF1ab/nsp2	23	D23G	gAc	gGc	34	34	AY.4	0.000053
ORF1ab/nsp2	23	D23D	gaC	gaT	31	31	B.1.1.421	0.939394
ORF1ab/nsp2	23	D23N	Gac	Aac	31	31	B.1.91	0.064315
ORF1ab/nsp2	23	D23D	gaC	gaT	29	29	B.1.1	0.000526
ORF1ab/nsp2	23	D23D	gaC	gaT	29	29	C.37	0.003366
ORF1ab/nsp2	23	D23D	gaC	gaT	29	29	P.1	0.000457
ORF1ab/nsp2	23	D23N	Gac	Aac	29	29	P.1	0.000457
ORF1ab/nsp2	23	D23D	gaC	gaT	27	27	AY.102	0.000716
ORF1ab/nsp2	23	D23D	gaC	gaT	27	27	AY.25	0.000162
ORF1ab/nsp2	23	D23N	Gac	Aac	27	27	B.1.177	0.000356
ORF1ab/nsp2	23	D23Y	Gac	Tac	26	26	B.1.617.2	0.000098
ORF1ab/nsp2	23	D23N	Gac	Aac	25	25	AY.43	0.000111
ORF1ab/nsp2	23	D23Y	Gac	Tac	25	25	AY.43	0.000111
ORF1ab/nsp2	23	D23N	Gac	Aac	25	25	B.1.177.81	0.004733
ORF1ab/nsp2	23	D23D	gaC	gaT	25	25	B.1.429	0.000588
ORF1ab/nsp2	23	D23D	gaC	gaT	24	24	B.1.596	0.002091
ORF1ab/nsp2	23	D23G	gAc	gGc	22	22	B.1.1.7	0.00002
ORF1ab/nsp2	23	D23D	gaC	gaT	22	22	B.1.177	0.00029
ORF1ab/nsp2	23	D23H	Gac	Cac	21	21	All	0.000004
ORF1ab/nsp2	23	D23N	Gac	Aac	21	21	C.37	0.002437
ORF1ab/nsp2	23	D23D	gaC	gaT	20	20	AY.98.1	0.000969
ORF1ab/nsp2	23	D23D	gaC	gaT	20	20	C.23	0.116279
ORF1ab/nsp2	23	D23G	gAc	gGc	19	19	B.1.1	0.000345
ORF1ab/nsp2	23	D23Y	Gac	Tac	19	19	B.1.429	0.000447
ORF1ab/nsp2	23	D23D	gaC	gaT	18	18	AY.74	0.002082
ORF1ab/nsp2	23	D23Y	Gac	Tac	17	17	B.1.621	0.001505
ORF1ab/nsp2	23	D23D	gaC	gaT	16	16	AY.47	0.000498
ORF1ab/nsp2	23	D23N	Gac	Aac	16	16	AY.61	0.001676
ORF1ab/nsp2	23	D23D	gaC	gaT	16	16	B.1.1.519	0.000635
ORF1ab/nsp2	23	D23E	gaC	gaA	16	16	B.1.1.7	0.000014
ORF1ab/nsp2	23	D23D	gaC	gaT	15	15	AY.20	0.000583
ORF1ab/nsp2	23	D23Y	Gac	Tac	13	13	AY.103	0.000081
ORF1ab/nsp2	23	D23D	gaC	gaT	13	13	B.1.351	0.000386
ORF1ab/nsp2	23	D23N	Gac	Aac	12	12	AY.19	0.013683
ORF1ab/nsp2	23	D23D	gaC	gaT	12	12	AY.33	0.000801
ORF1ab/nsp2	23	D23N	Gac	Aac	12	12	AY.9.2	0.000441
ORF1ab/nsp2	23	D23Y	Gac	Tac	12	12	C.37	0.001393
ORF1ab/nsp2	23	D23D	gaC	gaT	11	11	AY.5	0.000227
ORF1ab/nsp2	23	D23D	gaC	gaT	11	11	AY.75	0.000616
ORF1ab/nsp2	23	D23N	Gac	Aac	11	11	B.1.160	0.000343
ORF1ab/nsp2	23	D23N	Gac	Aac	10	10	AY.102	0.000265
ORF1ab/nsp2	23	D23Y	Gac	Tac	10	10	AY.3.1	0.000853
ORF1ab/nsp2	23	D23Y	Gac	Tac	10	10	B.1.2	0.000088
ORF1ab/nsp2	23	D23A	gAc	gCc	9	9	All	0.000002
ORF1ab/nsp2	23	D23D	gaC	gaT	9	9	AY.110	0.001014
ORF1ab/nsp2	23	D23G	gAc	gGc	9	9	AY.20	0.00035
ORF1ab/nsp2	23	D23N	Gac	Aac	9	9	B.1.234	0.001187
ORF1ab/nsp2	23	D23D	gaC	gaT	8	8	AY.14	0.000704
ORF1ab/nsp2	23	D23D	gaC	gaT	8	8	AY.26	0.000226
ORF1ab/nsp2	23	D23D	gaC	gaT	8	8	AY.79	0.009685
ORF1ab/nsp2	23	D23N	Gac	Aac	8	8	B.1.1.161	0.028269
ORF1ab/nsp2	23	D23D	gaC	gaT	8	8	B.1.1.216	0.007124
ORF1ab/nsp2	23	D23D	gaC	gaT	8	8	B.1.36.29	0.004139
ORF1ab/nsp2	23	D23Y	Gac	Tac	8	8	B.1.36.38	0.013136
ORF1ab/nsp2	23	D23G	gAc	gGc	8	8	B.1.617.2	0.00003
ORF1ab/nsp2	23	D23N	Gac	Aac	8	8	C.16	0.008484
ORF1ab/nsp2	23	D23D	gaC	gaT	8	8	P.1.14	0.000382
ORF1ab/nsp2	23	D23N	Gac	Aac	7	7	AY.103	0.000043
ORF1ab/nsp2	23	D23D	gaC	gaT	7	7	AY.107	0.003262
ORF1ab/nsp2	23	D23Y	Gac	Tac	7	7	AY.20	0.000272
ORF1ab/nsp2	23	D23H	Gac	Cac	7	7	AY.4	0.000011
ORF1ab/nsp2	23	D23D	gaC	gaT	7	7	AY.61	0.000733
ORF1ab/nsp2	23	D23D	gaC	gaT	7	7	AY.99.2	0.000645
ORF1ab/nsp2	23	D23H	Gac	Cac	7	7	B.1.1	0.000127
ORF1ab/nsp2	23	D23Y	Gac	Tac	7	7	B.1.1	0.000127
ORF1ab/nsp2	23	D23D	gaC	gaT	7	7	B.1.36.1	0.007982
ORF1ab/nsp2	23	D23N	Gac	Aac	7	7	B.1.417	0.2
ORF1ab/nsp2	23	D23D	gaC	gaT	7	7	B.1.422	0.005686
ORF1ab/nsp2	23	D23D	gaC	gaT	7	7	B.1.428	0.007143
ORF1ab/nsp2	23	D23D	gaC	gaT	7	7	B.1.564	0.002981
ORF1ab/nsp2	23	D23N	Gac	Aac	6	6	AY.111	0.001099
ORF1ab/nsp2	23	D23D	gaC	gaT	6	6	AY.117	0.000507
ORF1ab/nsp2	23	D23D	gaC	gaT	6	6	AY.118	0.000376
ORF1ab/nsp2	23	D23N	Gac	Aac	6	6	AY.39	0.000148
ORF1ab/nsp2	23	D23N	Gac	Aac	6	6	AY.39.1	0.000238
ORF1ab/nsp2	23	D23D	gaC	gaT	6	6	AY.54	0.000572
ORF1ab/nsp2	23	D23E	gaC	gaA	6	6	AY.9.2	0.00022
ORF1ab/nsp2	23	D23D	gaC	gaT	6	6	B.1.177.82	0.002864
ORF1ab/nsp2	23	D23D	gaC	gaT	6	6	B.1.525	0.000679
ORF1ab/nsp2	23	D23Y	Gac	Tac	6	6	B.1.561	0.002382
ORF1ab/nsp2	23	D23D	gaC	gaT	6	6	B.1.595	0.001566
ORF1ab/nsp2	23	D23Y	Gac	Tac	6	6	B.1.617.1	0.000774
ORF1ab/nsp2	23	D23G	gAc	gGc	6	6	P.3	0.009569
ORF1ab/nsp2	23	D23E	gaC	gaA	5	5	AY.103	0.000031
ORF1ab/nsp2	23	D23D	gaC	gaT	5	5	AY.119	0.000177
ORF1ab/nsp2	23	D23N	Gac	Aac	5	5	AY.23	0.000349
ORF1ab/nsp2	23	D23D	gaC	gaT	5	5	AY.39	0.000124
ORF1ab/nsp2	23	D23N	Gac	Aac	5	5	AY.5	0.000103
ORF1ab/nsp2	23	D23N	Gac	Aac	5	5	AY.75.1	0.000902
ORF1ab/nsp2	23	D23N	Gac	Aac	5	5	AY.9	0.000338
ORF1ab/nsp2	23	D23D	gaC	gaT	5	5	B.1.1.236	0.034483
ORF1ab/nsp2	23	D23del	GAC	---	5	5	B.1.1.33	0.002104
ORF1ab/nsp2	23	D23Y	Gac	Tac	5	5	B.1.177.12	0.000758
ORF1ab/nsp2	23	D23Y	Gac	Tac	5	5	B.1.258	0.000333
ORF1ab/nsp2	23	D23D	gaC	gaT	5	5	B.1.36	0.00073
ORF1ab/nsp2	23	D23Y	Gac	Tac	5	5	B.1.361	0.006443
ORF1ab/nsp2	23	D23D	gaC	gaT	5	5	B.1.427	0.000252
ORF1ab/nsp2	23	D23N	Gac	Aac	5	5	B.1.466.2	0.001956
ORF1ab/nsp2	23	D23Y	Gac	Tac	5	5	B.1.526	0.000118
ORF1ab/nsp2	23	D23Y	Gac	Tac	5	5	B.1.558	0.022831
ORF1ab/nsp2	23	D23E	gaC	gaA	5	5	B.1.617.2	0.000019
ORF1ab/nsp2	23	D23Y	Gac	Tac	4	4	AD.2	0.000876
ORF1ab/nsp2	23	D23del1	gaC	ga-	3	4	All	0.000001
ORF1ab/nsp2	23	D23del1	Gac	-ac	1	4	All	0
ORF1ab/nsp2	23	D23Y	Gac	Tac	4	4	AY.102	0.000106
ORF1ab/nsp2	23	D23Y	Gac	Tac	4	4	AY.117	0.000338
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	AY.119	0.000141
ORF1ab/nsp2	23	D23D	gaC	gaT	4	4	AY.120	0.000149
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	AY.20	0.000155
ORF1ab/nsp2	23	D23E	gaC	gaA	4	4	AY.20	0.000155
ORF1ab/nsp2	23	D23Y	Gac	Tac	4	4	AY.25	0.000024
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	AY.3	0.00004
ORF1ab/nsp2	23	D23Y	Gac	Tac	4	4	AY.39	0.000099
ORF1ab/nsp2	23	D23A	gAc	gCc	4	4	AY.39	0.000099
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	AY.4.2	0.000087
ORF1ab/nsp2	23	D23D	gaC	gaT	4	4	AY.9	0.00027
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	AY.97	0.006803
ORF1ab/nsp2	23	D23Y	Gac	Tac	4	4	AY.98.1	0.000194
ORF1ab/nsp2	23	D23E	gaC	gaA	4	4	B.1	0.000037
ORF1ab/nsp2	23	D23D	gaC	gaT	4	4	B.1.1.163	0.030534
ORF1ab/nsp2	23	D23del	GAC	---	4	4	B.1.1.348	0.003185
ORF1ab/nsp2	23	D23D	gaC	gaT	4	4	B.1.1.46	0.017467
ORF1ab/nsp2	23	D23del	GAC	---	4	4	B.1.1.7	0.000004
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	B.1.36.25	0.00883
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	B.1.36.29	0.002069
ORF1ab/nsp2	23	D23G	gAc	gGc	4	4	B.1.429	0.000094
ORF1ab/nsp2	23	D23N	Gac	Aac	4	4	B.1.524	0.005626
ORF1ab/nsp2	23	D23D	gaC	gaT	4	4	B.1.526	0.000094
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	A.23.1	0.002113
ORF1ab/nsp2	23	D23G	gAc	gGc	3	3	AY.102	0.00008
ORF1ab/nsp2	23	D23G	gAc	gGc	3	3	AY.103	0.000019
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	AY.26	0.000085
ORF1ab/nsp2	23	D23G	gAc	gGc	3	3	AY.26	0.000085
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	AY.29	0.000047
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	AY.34	0.000291
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	AY.35	0.000699
ORF1ab/nsp2	23	D23del	GAC	---	3	3	AY.4	0.000005
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	AY.4.2.1	0.000447
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	AY.45	0.000365
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	AY.47	0.000093
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	AY.5.4	0.00083
ORF1ab/nsp2	23	D23Y	Gac	Tac	3	3	AY.6	0.000123
ORF1ab/nsp2	23	D23G	gAc	gGc	3	3	AY.75	0.000168
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	AY.90	0.002053
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	AY.92	0.000862
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	AY.94	0.001328
ORF1ab/nsp2	23	D23E	gaC	gaA	3	3	B.1.1	0.000054
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	B.1.1.222	0.000612
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	B.1.1.318	0.000905
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.1.318	0.000905
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.1.416	0.002715
ORF1ab/nsp2	23	D23G	gAc	gGc	3	3	B.1.1.519	0.000119
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.177.18	0.00348
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.177.86	0.00055
ORF1ab/nsp2	23	D23Y	Gac	Tac	3	3	B.1.214.2	0.001799
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	B.1.243	0.000209
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.258	0.0002
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	B.1.351.1	0.115385
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.36.18	0.001261
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.369	0.000856
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	B.1.427	0.000151
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	B.1.438.1	0.000322
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	B.1.526	0.000071
ORF1ab/nsp2	23	D23N	Gac	Aac	3	3	B.1.596	0.000261
ORF1ab/nsp2	23	D23Y	Gac	Tac	3	3	B.1.619	0.002613
ORF1ab/nsp2	23	D23D	gaC	gaT	3	3	P.1.7	0.000958
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	A.2.5.3	0.020619
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AD.2	0.000438
ORF1ab/nsp2	23	D23G	gAc	gGc	2	2	AY.100	0.000092
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	AY.100	0.000092
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.106	0.00067
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.111	0.000366
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	AY.118	0.000125
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	AY.120	0.000074
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	AY.121	0.000271
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	AY.121	0.000271
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	AY.13	0.000322
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.13	0.000322
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.16.1	0.00094
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	AY.23	0.000139
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.23	0.000139
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	AY.24	0.000862
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.24	0.000862
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	AY.27	0.000129
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.29.1	0.000441
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	AY.3	0.00002
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.36	0.000296
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.45	0.000243
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.46	0.000208
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	AY.46.6	0.000144
ORF1ab/nsp2	23	D23E	gaC	gaA	2	2	AY.5	0.000041
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.7.1	0.000225
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.75.1	0.000361
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.9.1	0.000167
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	AY.9.1	0.000167
ORF1ab/nsp2	23	D23del	GAC	---	2	2	AY.9.2	0.000073
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	AY.95	0.001522
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	AY.98.1	0.000097
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B	0.000256
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.1.1	0.000653
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.1.204	0.006079
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.1.25	0.001137
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.1.277	0.001517
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B.1.1.306	0.000877
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	B.1.1.306	0.000877
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.1.311	0.000716
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.1.348	0.001592
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B.1.1.370	0.025316
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B.1.1.429	0.009217
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B.1.1.521	0.010695
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.139	0.001466
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B.1.160.16	0.001859
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.177.57	0.000562
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.177.76	0.004988
ORF1ab/nsp2	23	D23E	gaC	gaA	2	2	B.1.177.81	0.000379
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B.1.177.86	0.000367
ORF1ab/nsp2	23	D23E	gaC	gaA	2	2	B.1.221	0.000142
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.221	0.000142
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	B.1.232	0.001075
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.240	0.000431
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.241	0.001623
ORF1ab/nsp2	23	D23G	gAc	gGc	2	2	B.1.243	0.000139
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.258.17	0.000208
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.280	0.014286
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	B.1.36	0.000292
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	B.1.369	0.00057
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	B.1.429	0.000047
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	B.1.516	0.003914
ORF1ab/nsp2	23	D23H	Gac	Cac	2	2	B.1.526	0.000047
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.595.4	0.014599
ORF1ab/nsp2	23	D23del	GAC	---	2	2	B.1.617.2	0.000008
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.1.637	0.000146
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	B.40	0.000729
ORF1ab/nsp2	23	D23Y	Gac	Tac	2	2	D.2	0.00015
ORF1ab/nsp2	23	D23del	GAC	---	2	2	N.4	0.008511
ORF1ab/nsp2	23	D23del	GAC	---	2	2	N.6	0.014184
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	N.9	0.011905
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	P.1.10.1	0.01626
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	P.1.12	0.000968
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	P.1.15	0.000465
ORF1ab/nsp2	23	D23del	GAC	---	2	2	P.2	0.000373
ORF1ab/nsp2	23	D23D	gaC	gaT	2	2	P.2	0.000373
ORF1ab/nsp2	23	D23N	Gac	Aac	2	2	Q.1	0.000253
ORF1ab/nsp2	23	D23del	GAC	---	1	1	A.2.2	0.001689
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	A.2.5	0.000499
ORF1ab/nsp2	23	D23del2	gAC	g--	1	1	All	0
ORF1ab/nsp2	23	D23V	gAc	gTc	1	1	All	0
ORF1ab/nsp2	23	D23P	GAc	CCc	1	1	All	0
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AU.1	0.001266
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.1	0.000396
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.1	0.000396
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.10	0.00053
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.100	0.000046
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.101	0.00049
ORF1ab/nsp2	23	D23del	GAC	---	1	1	AY.102	0.000027
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.106	0.000335
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.108	0.001103
ORF1ab/nsp2	23	D23H	Gac	Cac	1	1	AY.109	0.00074
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.109	0.00074
ORF1ab/nsp2	23	D23del	GAC	---	1	1	AY.111	0.000183
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.116	0.000287
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.116	0.000287
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.118	0.000063
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	AY.119	0.000035
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.119	0.000035
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.12	0.000316
ORF1ab/nsp2	23	D23E	gaC	gaG	1	1	AY.120.2.1	0.000498
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.14	0.000088
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.16	0.00038
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.16.1	0.00047
ORF1ab/nsp2	23	D23A	gAc	gCc	1	1	AY.23	0.00007
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.24	0.000431
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.25	0.000006
ORF1ab/nsp2	23	D23del	GAC	---	1	1	AY.25	0.000006
ORF1ab/nsp2	23	D23A	gAc	gCc	1	1	AY.29	0.000016
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.29	0.000016
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.3	0.00001
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.3.1	0.000085
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.3.1	0.000085
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.30	0.000396
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.33	0.000067
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.33	0.000067
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.34	0.000097
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.34	0.000097
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.36	0.000148
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.37	0.000316
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	AY.39	0.000025
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.39.1	0.00004
ORF1ab/nsp2	23	D23P	GAc	CCc	1	1	AY.4	0.000002
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	AY.4	0.000002
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	AY.4.2	0.000022
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.4.5	0.000107
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.42	0.00004
ORF1ab/nsp2	23	D23A	gAc	gCc	1	1	AY.42	0.00004
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.42	0.00004
ORF1ab/nsp2	23	D23A	gAc	gCc	1	1	AY.43	0.000004
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.46	0.000104
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.46	0.000104
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	AY.46	0.000104
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.46.2	0.000635
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.46.4	0.000165
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.47	0.000031
ORF1ab/nsp2	23	D23del1	gaC	ga-	1	1	AY.48	0.000465
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.5.4	0.000277
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.51	0.000909
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.58	0.000907
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.6	0.000041
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.66	0.00107
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.67	0.000464
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.68	0.000274
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.69	0.000187
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.7	0.000196
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.7.1	0.000113
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.70	0.000209
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.8	0.000606
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.84	0.000437
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.85	0.000427
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	AY.85	0.000427
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.85	0.000427
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.9.2	0.000037
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	AY.93	0.000273
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AY.96	0.002075
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	AZ.2	0.000821
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1	0.000009
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	B.1	0.000009
ORF1ab/nsp2	23	D23del1	gaC	ga-	1	1	B.1	0.000009
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.10	0.001115
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.121	0.002427
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.141	0.002012
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.153	0.001095
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.161	0.003534
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.174	0.003378
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.198	0.001468
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.214	0.000055
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.25	0.000569
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.280	0.003086
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.280	0.003086
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.297	0.002237
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.301	0.001179
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.1.316	0.000925
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.316	0.000925
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.317	0.000412
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.1.326	0.001761
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.33	0.000421
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.1.348	0.000796
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.349	0.010309
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.37	0.000193
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.1.37	0.000193
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.375	0.011905
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.1.416	0.000905
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.1.420	0.001006
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.1.420	0.001006
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.432	0.001266
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.1.440	0.011765
ORF1ab/nsp2	23	D23H	Gac	Cac	1	1	B.1.1.47	0.005348
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.1.519	0.00004
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.1.521	0.005348
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.524	0.020833
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.1.61	0.008772
ORF1ab/nsp2	23	D23del1	Gac	-ac	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.1.70	0.000341
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.1.8	0.003584
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.128	0.000635
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.147	0.000756
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.160	0.000031
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.160	0.000031
ORF1ab/nsp2	23	D23E	gaC	gaG	1	1	B.1.177	0.000013
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.177	0.000013
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.177.16	0.000664
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.177.21	0.000076
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.177.35	0.000691
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.177.4	0.000211
ORF1ab/nsp2	23	D23V	gAc	gTc	1	1	B.1.177.44	0.000519
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.177.54	0.000606
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.177.54	0.000606
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	B.1.177.60	0.000218
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.177.70	0.005917
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.177.73	0.000566
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.177.73	0.000566
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.177.75	0.001041
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.177.83	0.001481
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.177.87	0.000728
ORF1ab/nsp2	23	D23del2	gAC	g--	1	1	B.1.2	0.000009
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	B.1.225	0.015385
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.23	0.006061
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.232	0.000537
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.234	0.000132
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.243.1	0.022222
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	B.1.258	0.000067
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.258	0.000067
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.258	0.000067
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	B.1.258.17	0.000104
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.311	0.000275
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.336	0.002439
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.337	0.005587
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.351	0.00003
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.351.2	0.000303
ORF1ab/nsp2	23	D23H	Gac	Cac	1	1	B.1.36	0.000146
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.36	0.000146
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.36.29	0.000517
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.36.8	0.001
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.362.2	0.004717
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.371	0.001122
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.371	0.001122
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.395	0.007042
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.409	0.000781
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.427	0.00005
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.427	0.00005
ORF1ab/nsp2	23	D23E	gaC	gaG	1	1	B.1.427	0.00005
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.428	0.00102
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.429	0.000024
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.456	0.003268
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.459	0.004082
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.459	0.004082
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.466.2	0.000391
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.474	0.001901
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.497	0.000315
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.509	0.000866
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.523	0.002451
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	B.1.525	0.000113
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.540	0.009709
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.547	0.02439
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.558	0.004566
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.564	0.000426
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.567	0.003333
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.568	0.001111
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.574	0.002151
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	B.1.596	0.000087
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.596	0.000087
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.597	0.00463
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.609	0.000479
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.612	0.002653
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.612	0.002653
ORF1ab/nsp2	23	D23H	Gac	Cac	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	23	D23del1	gaC	ga-	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	23	D23del	GAC	---	1	1	B.1.617.3	0.002985
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	B.1.621	0.000089
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.621	0.000089
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.621.1	0.000506
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.623	0.000536
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	B.1.632	0.006711
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.1.637	0.000073
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	B.1.637	0.000073
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	B.6.6	0.000889
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	C.14	0.004329
ORF1ab/nsp2	23	D23del	GAC	---	1	1	C.35	0.000774
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	C.36	0.000911
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	C.37.1	0.002618
ORF1ab/nsp2	23	D23G	gAc	gGc	1	1	D.2	0.000075
ORF1ab/nsp2	23	D23A	gAc	gCc	1	1	N.5	0.001767
ORF1ab/nsp2	23	D23del	GAC	---	1	1	P.1	0.000016
ORF1ab/nsp2	23	D23E	gaC	gaA	1	1	P.1	0.000016
ORF1ab/nsp2	23	D23H	Gac	Cac	1	1	P.1	0.000016
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	P.1.14	0.000048
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	P.1.15	0.000232
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	Q.1	0.000126
ORF1ab/nsp2	23	D23Y	Gac	Tac	1	1	Q.1	0.000126
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	Q.8	0.000165
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	Q.8	0.000165
ORF1ab/nsp2	23	D23D	gaC	gaT	1	1	R.1	0.00009
ORF1ab/nsp2	23	D23N	Gac	Aac	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.