CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 223 & Codon = aTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	223	T223I	T403I	nonsyn	aCt	aTt	19040	19038	0.999895	1472-1474

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	223	T223I	aCt	aTt	19038	19040	All	0.003641
ORF1ab/nsp2	223	T223I	aCt	aTt	6117	6118	B.1.617.2	0.023033
ORF1ab/nsp2	223	T223I	aCt	aTt	4772	4772	AY.100	0.219544
ORF1ab/nsp2	223	T223I	aCt	aTt	2198	2198	AY.4	0.003421
ORF1ab/nsp2	223	T223I	aCt	aTt	1266	1266	B.1.1.7	0.001133
ORF1ab/nsp2	223	T223I	aCt	aTt	1033	1033	B.1.620	0.977294
ORF1ab/nsp2	223	T223I	aCt	aTt	274	274	AY.25	0.001648
ORF1ab/nsp2	223	T223I	aCt	aTt	204	204	AY.103	0.001267
ORF1ab/nsp2	223	T223I	aCt	aTt	160	160	AY.43	0.000709
ORF1ab/nsp2	223	T223I	aCt	aTt	152	153	B.1.2	0.001338
ORF1ab/nsp2	223	T223I	aCt	aTt	143	143	AY.23	0.009974
ORF1ab/nsp2	223	T223I	aCt	aTt	143	143	AY.44	0.00087
ORF1ab/nsp2	223	T223I	aCt	aTt	128	128	B.1	0.001172
ORF1ab/nsp2	223	T223I	aCt	aTt	107	107	AY.102	0.002837
ORF1ab/nsp2	223	T223I	aCt	aTt	82	82	AY.26	0.002321
ORF1ab/nsp2	223	T223I	aCt	aTt	73	73	AY.116	0.020935
ORF1ab/nsp2	223	T223I	aCt	aTt	71	71	AY.39	0.001755
ORF1ab/nsp2	223	T223I	aCt	aTt	70	70	B.1.160	0.002183
ORF1ab/nsp2	223	T223I	aCt	aTt	67	67	AY.84	0.029309
ORF1ab/nsp2	223	T223I	aCt	aTt	67	67	B.1.1	0.001215
ORF1ab/nsp2	223	T223I	aCt	aTt	66	66	P.1	0.00104
ORF1ab/nsp2	223	T223I	aCt	aTt	65	65	AY.20	0.002526
ORF1ab/nsp2	223	T223I	aCt	aTt	64	64	AY.3	0.000637
ORF1ab/nsp2	223	T223I	aCt	aTt	57	57	B.1.177	0.000751
ORF1ab/nsp2	223	T223I	aCt	aTt	54	54	AY.117	0.004564
ORF1ab/nsp2	223	T223I	aCt	aTt	53	53	AY.30	0.020973
ORF1ab/nsp2	223	T223I	aCt	aTt	53	53	B.1.258.17	0.005511
ORF1ab/nsp2	223	T223I	aCt	aTt	50	50	B.1.427	0.002525
ORF1ab/nsp2	223	T223I	aCt	aTt	48	48	AY.98	0.003792
ORF1ab/nsp2	223	T223I	aCt	aTt	45	45	B.1.1.351	0.125698
ORF1ab/nsp2	223	T223I	aCt	aTt	41	41	AY.118	0.002569
ORF1ab/nsp2	223	T223I	aCt	aTt	41	41	B.1.596	0.003573
ORF1ab/nsp2	223	T223I	aCt	aTt	37	37	B.1.351	0.0011
ORF1ab/nsp2	223	T223I	aCt	aTt	35	35	AY.110	0.003944
ORF1ab/nsp2	223	T223I	aCt	aTt	34	34	AY.113	0.004841
ORF1ab/nsp2	223	T223I	aCt	aTt	32	32	AY.111	0.005861
ORF1ab/nsp2	223	T223I	aCt	aTt	31	31	B.1.1.28	0.009648
ORF1ab/nsp2	223	T223I	aCt	aTt	31	31	B.1.534	0.3875
ORF1ab/nsp2	223	T223I	aCt	aTt	30	30	AY.42	0.001207
ORF1ab/nsp2	223	T223I	aCt	aTt	29	29	B.1.601	0.878788
ORF1ab/nsp2	223	T223I	aCt	aTt	25	25	AY.98.1	0.001211
ORF1ab/nsp2	223	T223I	aCt	aTt	24	24	B.1.147	0.018141
ORF1ab/nsp2	223	T223I	aCt	aTt	23	23	B.1.243	0.0016
ORF1ab/nsp2	223	T223I	aCt	aTt	21	21	AY.45	0.002555
ORF1ab/nsp2	223	T223I	aCt	aTt	21	21	B.1.221	0.001492
ORF1ab/nsp2	223	T223I	aCt	aTt	20	20	B.1.429	0.000471
ORF1ab/nsp2	223	T223I	aCt	aTt	17	17	AY.75	0.000952
ORF1ab/nsp2	223	T223I	aCt	aTt	17	17	B.1.177.53	0.04067
ORF1ab/nsp2	223	T223I	aCt	aTt	16	16	AY.119	0.000565
ORF1ab/nsp2	223	T223I	aCt	aTt	16	16	B.1.1.519	0.000635
ORF1ab/nsp2	223	T223I	aCt	aTt	16	16	B.1.637	0.001169
ORF1ab/nsp2	223	T223I	aCt	aTt	15	15	AY.36	0.002223
ORF1ab/nsp2	223	T223I	aCt	aTt	15	15	AY.46	0.001561
ORF1ab/nsp2	223	T223I	aCt	aTt	15	15	AY.5.3	0.005061
ORF1ab/nsp2	223	T223I	aCt	aTt	15	15	AY.92	0.004309
ORF1ab/nsp2	223	T223I	aCt	aTt	15	15	B.1.525	0.001697
ORF1ab/nsp2	223	T223I	aCt	aTt	15	15	P.1.17	0.002426
ORF1ab/nsp2	223	T223I	aCt	aTt	14	14	AY.47	0.000435
ORF1ab/nsp2	223	T223I	aCt	aTt	14	14	AY.67	0.0065
ORF1ab/nsp2	223	T223I	aCt	aTt	14	14	B.1.1.374	0.033254
ORF1ab/nsp2	223	T223I	aCt	aTt	13	13	B.1.1.33	0.005471
ORF1ab/nsp2	223	T223I	aCt	aTt	13	13	B.1.258	0.000865
ORF1ab/nsp2	223	T223I	aCt	aTt	13	13	B.1.438.1	0.001394
ORF1ab/nsp2	223	T223I	aCt	aTt	13	13	P.1.1	0.00413
ORF1ab/nsp2	223	T223I	aCt	aTt	12	12	AY.4.2	0.00026
ORF1ab/nsp2	223	T223I	aCt	aTt	12	12	AY.5	0.000248
ORF1ab/nsp2	223	T223I	aCt	aTt	11	11	AY.101	0.005395
ORF1ab/nsp2	223	T223I	aCt	aTt	11	11	AY.8	0.006667
ORF1ab/nsp2	223	T223I	aCt	aTt	11	11	B	0.001406
ORF1ab/nsp2	223	T223I	aCt	aTt	10	10	AY.33	0.000668
ORF1ab/nsp2	223	T223I	aCt	aTt	10	10	AY.78	0.015408
ORF1ab/nsp2	223	T223I	aCt	aTt	10	10	B.1.1.306	0.004384
ORF1ab/nsp2	223	T223I	aCt	aTt	10	10	B.1.1.348	0.007962
ORF1ab/nsp2	223	T223I	aCt	aTt	9	9	B.1.1.25	0.005117
ORF1ab/nsp2	223	T223I	aCt	aTt	9	9	B.1.3	0.02356
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	AY.14	0.000704
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	AY.19	0.009122
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	AY.34	0.000776
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	AY.35	0.001864
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	AY.6	0.000329
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	AY.75.1	0.001442
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	B.1.1.214	0.000444
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	B.1.177.86	0.001468
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	B.1.36	0.001167
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	B.1.521	0.039801
ORF1ab/nsp2	223	T223I	aCt	aTt	8	8	B.1.526	0.000188
ORF1ab/nsp2	223	T223I	aCt	aTt	7	7	AY.104	0.013889
ORF1ab/nsp2	223	T223I	aCt	aTt	7	7	AY.105	0.004502
ORF1ab/nsp2	223	T223I	aCt	aTt	7	7	B.1.389	0.007014
ORF1ab/nsp2	223	T223I	aCt	aTt	6	6	AY.46.4	0.000987
ORF1ab/nsp2	223	T223I	aCt	aTt	6	6	AY.83	0.010345
ORF1ab/nsp2	223	T223I	aCt	aTt	6	6	B.1.1.284	0.000644
ORF1ab/nsp2	223	T223I	aCt	aTt	6	6	B.1.1.50	0.004073
ORF1ab/nsp2	223	T223I	aCt	aTt	6	6	B.1.1.63	0.002315
ORF1ab/nsp2	223	T223I	aCt	aTt	6	6	B.1.409	0.004687
ORF1ab/nsp2	223	T223I	aCt	aTt	6	6	B.1.562	0.111111
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	AY.24	0.002155
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	AY.27	0.000324
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	AY.4.4	0.002046
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	AY.46.6	0.000361
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	AY.9.2	0.000184
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	AY.91	0.003652
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	B.1.1.196	0.028571
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	B.1.214.2	0.002998
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	B.1.471	0.013661
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	B.1.617.1	0.000645
ORF1ab/nsp2	223	T223I	aCt	aTt	5	5	P.1.12	0.00242
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	AY.29	0.000063
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	AY.39.1	0.000158
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	AY.48	0.00186
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	AY.62	0.001743
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	AY.86	0.00332
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	AY.99	0.004197
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	B.1.1.311	0.001433
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	B.1.1.318	0.001207
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	B.1.177.44	0.002076
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	B.1.36.17	0.001976
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	B.1.36.18	0.001681
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	B.1.558	0.018265
ORF1ab/nsp2	223	T223I	aCt	aTt	4	4	R.1	0.00036
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.120	0.000112
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.121	0.000406
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.32	0.001597
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.46.2	0.001906
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.54	0.000286
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.61	0.000314
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.81	0.005976
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.88	0.002653
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	AY.99.2	0.000276
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.1.101	0.03
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.1.153	0.003286
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.1.416	0.002715
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.177.81	0.000568
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.177.82	0.001432
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.36.38	0.004926
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.509	0.002597
ORF1ab/nsp2	223	T223I	aCt	aTt	3	3	B.1.564	0.001278
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	A.19	0.018868
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	A.2.5	0.000998
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.108	0.002205
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.13	0.000322
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.16	0.000759
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.16.1	0.00094
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.2	0.000712
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.21	0.003795
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.4.5	0.000215
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.41	0.000588
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.55	0.001835
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.57	0.001312
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.7	0.000392
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.7.1	0.000225
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.70	0.000417
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.80	0.002257
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.82	0.002714
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.85	0.000854
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AY.87	0.001665
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AZ.1	0.001735
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	AZ.2	0.001642
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.1.10	0.00223
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.1.157	0.001826
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.1.216	0.001781
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.1.312	0.003824
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.1.39	0.001019
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.1.434	0.000697
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.1.462	0.017241
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.127	0.004396
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.177.26	0.013986
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.221.3	0.001667
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.229	0.019417
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.240	0.000431
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.36.29	0.001035
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.36.7	0.008
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.36.8	0.002
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.474	0.003802
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.538	0.016129
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.565	0.001621
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.575	0.000607
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.609	0.000959
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	B.1.621	0.000177
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	D.2	0.00015
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	P.1.14	0.000096
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	P.1.15	0.000465
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	P.1.16	0.000748
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	P.1.2	0.002312
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	P.1.7	0.000639
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	Q.3	0.00029
ORF1ab/nsp2	223	T223I	aCt	aTt	2	2	Q.8	0.00033
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.1	0.000396
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.107	0.000466
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.114	0.000231
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.3.1	0.000085
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.37	0.000316
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.38	0.000499
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.39.2	0.001541
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.4.3	0.000842
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.46.1	0.001027
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.46.3	0.000934
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.46.5	0.000198
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.50	0.000799
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.51	0.000909
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.53	0.000288
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.65	0.000533
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.66	0.00107
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.72	0.001361
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.73	0.000665
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.77	0.001127
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.79	0.001211
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.9	0.000068
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	AY.90	0.000684
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.144	0.028571
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.161	0.003534
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.170	0.001247
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.174	0.003378
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.192	0.002309
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.204	0.00304
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.217	0.003636
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.222	0.000204
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.241	0.00207
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.294	0.001266
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.307	0.002532
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.317	0.000412
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.328	0.016949
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.365	0.005587
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.37	0.000193
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.387	0.058824
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.1.523	0.001563
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.111	0.001175
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.146	0.004237
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.160.29	0.004219
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.177.32	0.00135
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.177.37	0.027027
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.177.46	0.000918
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.177.73	0.000566
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.201	0.005682
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.232	0.000537
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.258.15	0.018868
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.258.4	0.003448
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.298	0.002114
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.302	0.013333
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.351.2	0.000303
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.369	0.000285
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.37	0.014706
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.371	0.001122
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.381	0.007812
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.400	0.000429
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.403	0.003268
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.420	0.010417
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.425	0.002994
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.441	0.009615
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.453	0.003236
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.456	0.003268
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.465	0.003802
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.466.2	0.000391
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.470	0.001404
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.541	0.004425
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.570	0.002941
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.576	0.000907
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.577	0.000687
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.586	0.010989
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.612	0.002653
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.619.1	0.000641
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.623	0.000536
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.625	0.002353
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.627	0.00202
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.628	0.000352
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.1.78	0.008547
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.23	0.002924
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	B.4	0.002208
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	C.1.2	0.004255
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	C.14	0.004329
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	C.36.3	0.000567
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	L.3	0.003546
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	P.1.4	0.000977
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	P.2	0.000187
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	P.3	0.001595
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	P.6	0.003145
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	Q.1	0.000126
ORF1ab/nsp2	223	T223I	aCt	aTt	1	1	Q.4	0.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.