CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 219 | K219N | K399N | nonsyn | aaG | aaT | 545 | 483 | 0.886239 | 1460-1462 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 483 | 545 | All | 0.000092 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 59 | 59 | AY.33 | 0.00394 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 53 | 53 | B.1.258 | 0.003527 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 26 | 26 | AY.39.1 | 0.00103 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 20 | 22 | B.1 | 0.000183 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 21 | 21 | B.1.177 | 0.000277 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 16 | 16 | AY.25 | 0.000096 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 8 | 8 | AY.116.1 | 0.002491 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 8 | 8 | AY.13 | 0.001288 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | AU.1 | 0.003797 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | B.1.448 | 0.005249 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | A.9 | 0.045455 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 219 | K219N | aaG | aaT | 1 | 1 | B.1.617.1 | 0.000129 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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