CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 218 & Codon = Tgt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2218R218CR398CnonsynCgtTgt6137613711457-1459

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2218R218CCgtTgt61376137All0.001174
ORF1ab/nsp2218R218CCgtTgt17371737B.1.4290.04087
ORF1ab/nsp2218R218CCgtTgt516516AY.40.000803
ORF1ab/nsp2218R218CCgtTgt409409B.1.1.70.000366
ORF1ab/nsp2218R218CCgtTgt256256B.1.20.002254
ORF1ab/nsp2218R218CCgtTgt143143B.1.617.20.000538
ORF1ab/nsp2218R218CCgtTgt135135B.10.001237
ORF1ab/nsp2218R218CCgtTgt122122AY.30.001213
ORF1ab/nsp2218R218CCgtTgt121121B.400.04408
ORF1ab/nsp2218R218CCgtTgt105105B.1.1600.003275
ORF1ab/nsp2218R218CCgtTgt103103AY.270.006666
ORF1ab/nsp2218R218CCgtTgt102102AY.440.000621
ORF1ab/nsp2218R218CCgtTgt101101B.1.10.001832
ORF1ab/nsp2218R218CCgtTgt101101B.1.1770.00133
ORF1ab/nsp2218R218CCgtTgt9696AY.9.10.008038
ORF1ab/nsp2218R218CCgtTgt9191AY.820.123474
ORF1ab/nsp2218R218CCgtTgt8787AY.250.000523
ORF1ab/nsp2218R218CCgtTgt8282AY.1030.000509
ORF1ab/nsp2218R218CCgtTgt7878B.1.2430.005428
ORF1ab/nsp2218R218CCgtTgt7676B.1.4270.003838
ORF1ab/nsp2218R218CCgtTgt7474AY.430.000328
ORF1ab/nsp2218R218CCgtTgt6767AY.98.10.003245
ORF1ab/nsp2218R218CCgtTgt6060AY.140.005281
ORF1ab/nsp2218R218CCgtTgt5050AY.39.10.001981
ORF1ab/nsp2218R218CCgtTgt5050P.10.000788
ORF1ab/nsp2218R218CCgtTgt4747B.1.2580.003128
ORF1ab/nsp2218R218CCgtTgt4242AY.860.034855
ORF1ab/nsp2218R218CCgtTgt4141B.1.1.3941
ORF1ab/nsp2218R218CCgtTgt3939B.1.220.051383
ORF1ab/nsp2218R218CCgtTgt3737AY.50.000764
ORF1ab/nsp2218R218CCgtTgt3636B.1.438.10.003861
ORF1ab/nsp2218R218CCgtTgt3535AY.470.001089
ORF1ab/nsp2218R218CCgtTgt3333B.1.1.5190.00131
ORF1ab/nsp2218R218CCgtTgt3030AY.290.000473
ORF1ab/nsp2218R218CCgtTgt2929B.1.177.810.00549
ORF1ab/nsp2218R218CCgtTgt2424AY.300.009497
ORF1ab/nsp2218R218CCgtTgt2424B.1.5260.000564
ORF1ab/nsp2218R218CCgtTgt2323B.1.177.730.013024
ORF1ab/nsp2218R218CCgtTgt2121AY.1180.001316
ORF1ab/nsp2218R218CCgtTgt2020AY.200.000777
ORF1ab/nsp2218R218CCgtTgt2020AY.260.000566
ORF1ab/nsp2218R218CCgtTgt1818AY.340.001745
ORF1ab/nsp2218R218CCgtTgt1818AY.390.000445
ORF1ab/nsp2218R218CCgtTgt1818AY.4.20.00039
ORF1ab/nsp2218R218CCgtTgt1818B.1.5960.001568
ORF1ab/nsp2218R218CCgtTgt1717AY.1020.000451
ORF1ab/nsp2218R218CCgtTgt1717B.1.3110.004668
ORF1ab/nsp2218R218CCgtTgt1616B.1.1.2940.020253
ORF1ab/nsp2218R218CCgtTgt1616B.1.5250.001811
ORF1ab/nsp2218R218CCgtTgt1414AY.1210.001894
ORF1ab/nsp2218R218CCgtTgt1414B.1.177.210.001071
ORF1ab/nsp2218R218CCgtTgt1414B.1.36.240.08642
ORF1ab/nsp2218R218CCgtTgt1212B.1.1.2220.002448
ORF1ab/nsp2218R218CCgtTgt1212B.1.5640.005111
ORF1ab/nsp2218R218CCgtTgt1212Z.10.034682
ORF1ab/nsp2218R218CCgtTgt1111A.10.0031
ORF1ab/nsp2218R218CCgtTgt1111AY.5.30.003711
ORF1ab/nsp2218R218CCgtTgt1111B.1.466.20.004304
ORF1ab/nsp2218R218CCgtTgt1111B.1.6370.000804
ORF1ab/nsp2218R218CCgtTgt1111B.1.6390.23913
ORF1ab/nsp2218R218CCgtTgt1010B.1.1.2300.091743
ORF1ab/nsp2218R218CCgtTgt1010B.1.3510.000297
ORF1ab/nsp2218R218CCgtTgt99AY.240.003879
ORF1ab/nsp2218R218CCgtTgt99AY.330.000601
ORF1ab/nsp2218R218CCgtTgt99P.1.140.00043
ORF1ab/nsp2218R218CCgtTgt99P.1.70.002874
ORF1ab/nsp2218R218CCgtTgt88AY.1190.000282
ORF1ab/nsp2218R218CCgtTgt88AY.610.000838
ORF1ab/nsp2218R218CCgtTgt88B.1.177.40.001688
ORF1ab/nsp2218R218CCgtTgt88B.1.3400.034335
ORF1ab/nsp2218R218CCgtTgt88B.1.360.001167
ORF1ab/nsp2218R218CCgtTgt88C.370.000929
ORF1ab/nsp2218R218CCgtTgt77AY.1000.000322
ORF1ab/nsp2218R218CCgtTgt77AY.1170.000592
ORF1ab/nsp2218R218CCgtTgt77AY.230.000488
ORF1ab/nsp2218R218CCgtTgt77AY.360.001037
ORF1ab/nsp2218R218CCgtTgt77AY.670.00325
ORF1ab/nsp2218R218CCgtTgt77AY.700.00146
ORF1ab/nsp2218R218CCgtTgt77B.1.1.4340.00244
ORF1ab/nsp2218R218CCgtTgt77B.1.1.700.002387
ORF1ab/nsp2218R218CCgtTgt77B.1.2210.000497
ORF1ab/nsp2218R218CCgtTgt66AY.540.000572
ORF1ab/nsp2218R218CCgtTgt66AY.590.003178
ORF1ab/nsp2218R218CCgtTgt66AY.60.000247
ORF1ab/nsp2218R218CCgtTgt66AY.90.000406
ORF1ab/nsp2218R218CCgtTgt66AY.9.20.00022
ORF1ab/nsp2218R218CCgtTgt66AY.99.20.000553
ORF1ab/nsp2218R218CCgtTgt66B0.000767
ORF1ab/nsp2218R218CCgtTgt66B.1.1.2140.000333
ORF1ab/nsp2218R218CCgtTgt66B.1.1.3260.010563
ORF1ab/nsp2218R218CCgtTgt66B.1.1.370.001157
ORF1ab/nsp2218R218CCgtTgt66B.1.1.4160.00543
ORF1ab/nsp2218R218CCgtTgt66B.1.160.160.005576
ORF1ab/nsp2218R218CCgtTgt66D.20.00045
ORF1ab/nsp2218R218CCgtTgt55AY.1200.000186
ORF1ab/nsp2218R218CCgtTgt55AY.450.000608
ORF1ab/nsp2218R218CCgtTgt55AY.46.20.003177
ORF1ab/nsp2218R218CCgtTgt55AY.740.000578
ORF1ab/nsp2218R218CCgtTgt55AY.750.00028
ORF1ab/nsp2218R218CCgtTgt55B.1.1.2200.009294
ORF1ab/nsp2218R218CCgtTgt55B.1.1.280.001556
ORF1ab/nsp2218R218CCgtTgt55B.1.1.3060.002192
ORF1ab/nsp2218R218CCgtTgt55B.1.5750.001517
ORF1ab/nsp2218R218CCgtTgt55P.1.150.001162
ORF1ab/nsp2218R218CCgtTgt44AY.46.30.003735
ORF1ab/nsp2218R218CCgtTgt44AY.75.10.000721
ORF1ab/nsp2218R218CCgtTgt44B.1.1.2840.00043
ORF1ab/nsp2218R218CCgtTgt44B.1.1.2860.011594
ORF1ab/nsp2218R218CCgtTgt44B.1.1.3160.0037
ORF1ab/nsp2218R218CCgtTgt44B.1.1.3170.001647
ORF1ab/nsp2218R218CCgtTgt44B.1.177.440.002076
ORF1ab/nsp2218R218CCgtTgt44B.1.36.10.004561
ORF1ab/nsp2218R218CCgtTgt44B.1.36.80.004
ORF1ab/nsp2218R218CCgtTgt44B.1.5380.032258
ORF1ab/nsp2218R218CCgtTgt44B.1.5760.003626
ORF1ab/nsp2218R218CCgtTgt44B.1.5880.00364
ORF1ab/nsp2218R218CCgtTgt33AY.1110.000549
ORF1ab/nsp2218R218CCgtTgt33AY.120.000948
ORF1ab/nsp2218R218CCgtTgt33AY.120.10.000963
ORF1ab/nsp2218R218CCgtTgt33AY.420.000121
ORF1ab/nsp2218R218CCgtTgt33AY.710.001425
ORF1ab/nsp2218R218CCgtTgt33AY.910.002191
ORF1ab/nsp2218R218CCgtTgt33AY.920.000862
ORF1ab/nsp2218R218CCgtTgt33AY.940.001328
ORF1ab/nsp2218R218CCgtTgt33AY.980.000237
ORF1ab/nsp2218R218CCgtTgt33B.1.1.3480.002389
ORF1ab/nsp2218R218CCgtTgt33B.1.177.330.004934
ORF1ab/nsp2218R218CCgtTgt33B.1.177.860.00055
ORF1ab/nsp2218R218CCgtTgt33B.1.2360.00616
ORF1ab/nsp2218R218CCgtTgt33B.1.2400.000647
ORF1ab/nsp2218R218CCgtTgt33B.1.36.220.003623
ORF1ab/nsp2218R218CCgtTgt33B.1.6230.001609
ORF1ab/nsp2218R218CCgtTgt33C.360.002732
ORF1ab/nsp2218R218CCgtTgt33R.10.00027
ORF1ab/nsp2218R218CCgtTgt33XA0.066667
ORF1ab/nsp2218R218CCgtTgt22AU.30.004219
ORF1ab/nsp2218R218CCgtTgt22AY.10.000791
ORF1ab/nsp2218R218CCgtTgt22AY.1140.000462
ORF1ab/nsp2218R218CCgtTgt22AY.3.10.000171
ORF1ab/nsp2218R218CCgtTgt22AY.4.50.000215
ORF1ab/nsp2218R218CCgtTgt22AY.460.000208
ORF1ab/nsp2218R218CCgtTgt22AY.630.000774
ORF1ab/nsp2218R218CCgtTgt22AY.690.000373
ORF1ab/nsp2218R218CCgtTgt22AY.990.002099
ORF1ab/nsp2218R218CCgtTgt22AY.99.10.003106
ORF1ab/nsp2218R218CCgtTgt22B.1.1.10.000653
ORF1ab/nsp2218R218CCgtTgt22B.1.1.1530.002191
ORF1ab/nsp2218R218CCgtTgt22B.1.1.2160.001781
ORF1ab/nsp2218R218CCgtTgt22B.1.1.2650.006309
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3070.005063
ORF1ab/nsp2218R218CCgtTgt22B.1.1.330.000842
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3620.011236
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3890.012121
ORF1ab/nsp2218R218CCgtTgt22B.1.1.390.001019
ORF1ab/nsp2218R218CCgtTgt22B.1.1.3970.004505
ORF1ab/nsp2218R218CCgtTgt22B.1.1.4320.002532
ORF1ab/nsp2218R218CCgtTgt22B.1.1.4870.011173
ORF1ab/nsp2218R218CCgtTgt22B.1.1.5250.010929
ORF1ab/nsp2218R218CCgtTgt22B.1.177.120.000303
ORF1ab/nsp2218R218CCgtTgt22B.1.177.230.006472
ORF1ab/nsp2218R218CCgtTgt22B.1.177.530.004785
ORF1ab/nsp2218R218CCgtTgt22B.1.177.570.000562
ORF1ab/nsp2218R218CCgtTgt22B.1.177.60.001953
ORF1ab/nsp2218R218CCgtTgt22B.1.177.690.002967
ORF1ab/nsp2218R218CCgtTgt22B.1.2340.000264
ORF1ab/nsp2218R218CCgtTgt22B.1.3690.00057
ORF1ab/nsp2218R218CCgtTgt22B.1.3960.001411
ORF1ab/nsp2218R218CCgtTgt22B.1.4330.00639
ORF1ab/nsp2218R218CCgtTgt22B.1.4920.014085
ORF1ab/nsp2218R218CCgtTgt22B.1.6090.000959
ORF1ab/nsp2218R218CCgtTgt22B.1.617.10.000258
ORF1ab/nsp2218R218CCgtTgt22B.1.88.10.009615
ORF1ab/nsp2218R218CCgtTgt22N.60.014184
ORF1ab/nsp2218R218CCgtTgt22P.1.120.000968
ORF1ab/nsp2218R218CCgtTgt22P.70.008734
ORF1ab/nsp2218R218CCgtTgt22Q.10.000253
ORF1ab/nsp2218R218CCgtTgt22Q.80.00033
ORF1ab/nsp2218R218CCgtTgt11A.2.20.001689
ORF1ab/nsp2218R218CCgtTgt11AD.20.000219
ORF1ab/nsp2218R218CCgtTgt11AT.10.005128
ORF1ab/nsp2218R218CCgtTgt11AY.100.00053
ORF1ab/nsp2218R218CCgtTgt11AY.1050.000643
ORF1ab/nsp2218R218CCgtTgt11AY.1060.000335
ORF1ab/nsp2218R218CCgtTgt11AY.160.00038
ORF1ab/nsp2218R218CCgtTgt11AY.16.10.00047
ORF1ab/nsp2218R218CCgtTgt11AY.190.00114
ORF1ab/nsp2218R218CCgtTgt11AY.29.10.000221
ORF1ab/nsp2218R218CCgtTgt11AY.34.10.00051
ORF1ab/nsp2218R218CCgtTgt11AY.350.000233
ORF1ab/nsp2218R218CCgtTgt11AY.370.000316
ORF1ab/nsp2218R218CCgtTgt11AY.380.000499
ORF1ab/nsp2218R218CCgtTgt11AY.4.40.000409
ORF1ab/nsp2218R218CCgtTgt11AY.400.000964
ORF1ab/nsp2218R218CCgtTgt11AY.410.000294
ORF1ab/nsp2218R218CCgtTgt11AY.46.10.001027
ORF1ab/nsp2218R218CCgtTgt11AY.46.40.000165
ORF1ab/nsp2218R218CCgtTgt11AY.46.50.000198
ORF1ab/nsp2218R218CCgtTgt11AY.46.60.000072
ORF1ab/nsp2218R218CCgtTgt11AY.490.003195
ORF1ab/nsp2218R218CCgtTgt11AY.580.000907
ORF1ab/nsp2218R218CCgtTgt11AY.620.000436
ORF1ab/nsp2218R218CCgtTgt11AY.680.000274
ORF1ab/nsp2218R218CCgtTgt11AY.70.000196
ORF1ab/nsp2218R218CCgtTgt11AY.720.001361
ORF1ab/nsp2218R218CCgtTgt11AY.770.001127
ORF1ab/nsp2218R218CCgtTgt11AY.80.000606
ORF1ab/nsp2218R218CCgtTgt11AY.840.000437
ORF1ab/nsp2218R218CCgtTgt11AY.91.10.004065
ORF1ab/nsp2218R218CCgtTgt11AZ.20.000821
ORF1ab/nsp2218R218CCgtTgt11AZ.30.00152
ORF1ab/nsp2218R218CCgtTgt11B.1.1.100.001115
ORF1ab/nsp2218R218CCgtTgt11B.1.1.1650.015385
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2050.003717
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2080.012195
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2280.003049
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2320.001815
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2530.002506
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2740.005051
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2800.003086
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2900.018182
ORF1ab/nsp2218R218CCgtTgt11B.1.1.2980.000862
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3110.000358
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3180.000302
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3680.003086
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3720.000689
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3750.011905
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3780.007299
ORF1ab/nsp2218R218CCgtTgt11B.1.1.3980.003226
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4030.025641
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4120.007634
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4380.05
ORF1ab/nsp2218R218CCgtTgt11B.1.1.4860.001577
ORF1ab/nsp2218R218CCgtTgt11B.1.1.500.000679
ORF1ab/nsp2218R218CCgtTgt11B.1.1.510.001718
ORF1ab/nsp2218R218CCgtTgt11B.1.1.5260.003546
ORF1ab/nsp2218R218CCgtTgt11B.1.1.540.003021
ORF1ab/nsp2218R218CCgtTgt11B.1.1.740.00431
ORF1ab/nsp2218R218CCgtTgt11B.1.1270.002198
ORF1ab/nsp2218R218CCgtTgt11B.1.1280.000635
ORF1ab/nsp2218R218CCgtTgt11B.1.1570.002985
ORF1ab/nsp2218R218CCgtTgt11B.1.160.130.027778
ORF1ab/nsp2218R218CCgtTgt11B.1.160.140.002119
ORF1ab/nsp2218R218CCgtTgt11B.1.160.280.002924
ORF1ab/nsp2218R218CCgtTgt11B.1.177.150.000631
ORF1ab/nsp2218R218CCgtTgt11B.1.177.170.000821
ORF1ab/nsp2218R218CCgtTgt11B.1.177.320.00135
ORF1ab/nsp2218R218CCgtTgt11B.1.177.350.000691
ORF1ab/nsp2218R218CCgtTgt11B.1.177.380.010417
ORF1ab/nsp2218R218CCgtTgt11B.1.177.50.001242
ORF1ab/nsp2218R218CCgtTgt11B.1.177.520.001757
ORF1ab/nsp2218R218CCgtTgt11B.1.177.600.000218
ORF1ab/nsp2218R218CCgtTgt11B.1.177.650.000665
ORF1ab/nsp2218R218CCgtTgt11B.1.177.70.000165
ORF1ab/nsp2218R218CCgtTgt11B.1.214.20.0006
ORF1ab/nsp2218R218CCgtTgt11B.1.221.20.004016
ORF1ab/nsp2218R218CCgtTgt11B.1.2320.000537
ORF1ab/nsp2218R218CCgtTgt11B.1.2420.018868
ORF1ab/nsp2218R218CCgtTgt11B.1.258.170.000104
ORF1ab/nsp2218R218CCgtTgt11B.1.258.30.001675
ORF1ab/nsp2218R218CCgtTgt11B.1.351.20.000303
ORF1ab/nsp2218R218CCgtTgt11B.1.351.30.000876
ORF1ab/nsp2218R218CCgtTgt11B.1.36.340.021277
ORF1ab/nsp2218R218CCgtTgt11B.1.36.350.002604
ORF1ab/nsp2218R218CCgtTgt11B.1.36.360.000602
ORF1ab/nsp2218R218CCgtTgt11B.1.3700.008
ORF1ab/nsp2218R218CCgtTgt11B.1.3950.007042
ORF1ab/nsp2218R218CCgtTgt11B.1.4000.000429
ORF1ab/nsp2218R218CCgtTgt11B.1.4040.001302
ORF1ab/nsp2218R218CCgtTgt11B.1.4260.001009
ORF1ab/nsp2218R218CCgtTgt11B.1.4440.015873
ORF1ab/nsp2218R218CCgtTgt11B.1.4530.003236
ORF1ab/nsp2218R218CCgtTgt11B.1.4690.00361
ORF1ab/nsp2218R218CCgtTgt11B.1.4700.001404
ORF1ab/nsp2218R218CCgtTgt11B.1.4710.002732
ORF1ab/nsp2218R218CCgtTgt11B.1.5090.000866
ORF1ab/nsp2218R218CCgtTgt11B.1.5230.002451
ORF1ab/nsp2218R218CCgtTgt11B.1.5370.02
ORF1ab/nsp2218R218CCgtTgt11B.1.5610.000397
ORF1ab/nsp2218R218CCgtTgt11B.1.575.10.002439
ORF1ab/nsp2218R218CCgtTgt11B.1.5780.017857
ORF1ab/nsp2218R218CCgtTgt11B.1.5800.004065
ORF1ab/nsp2218R218CCgtTgt11B.1.5950.000261
ORF1ab/nsp2218R218CCgtTgt11B.1.595.40.007299
ORF1ab/nsp2218R218CCgtTgt11B.1.6190.000871
ORF1ab/nsp2218R218CCgtTgt11B.1.6210.000089
ORF1ab/nsp2218R218CCgtTgt11B.1.6270.00202
ORF1ab/nsp2218R218CCgtTgt11C.110.010638
ORF1ab/nsp2218R218CCgtTgt11C.160.00106
ORF1ab/nsp2218R218CCgtTgt11C.180.002591
ORF1ab/nsp2218R218CCgtTgt11C.2.10.006667
ORF1ab/nsp2218R218CCgtTgt11C.230.005814
ORF1ab/nsp2218R218CCgtTgt11N.50.001767
ORF1ab/nsp2218R218CCgtTgt11P.1.100.000269
ORF1ab/nsp2218R218CCgtTgt11P.1.170.000162
ORF1ab/nsp2218R218CCgtTgt11P.20.000187
ORF1ab/nsp2218R218CCgtTgt11P.60.003145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.