CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 211 & Codon = tcG

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2211S211SS391SsyntcTtcG11982890.2412351436-1438

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2211S211StcTtcG2891198All0.000055
ORF1ab/nsp2211S211StcTtcG4353B.1.20.000035
ORF1ab/nsp2211S211StcTtcG6171AY.40.000009
ORF1ab/nsp2211S211StcTtcG132132B.1.3250.910345
ORF1ab/nsp2211S211StcTtcG4124B.1.1.70.000004
ORF1ab/nsp2211S211StcTtcG5152B.1.4270.002575
ORF1ab/nsp2211S211StcTtcG149AY.440.000006
ORF1ab/nsp2211S211StcTtcG133AY.1180.000063
ORF1ab/nsp2211S211StcTtcG933B.1.617.20.000034
ORF1ab/nsp2211S211StcTtcG222B.1.10.000036
ORF1ab/nsp2211S211StcTtcG1318B.10.000119
ORF1ab/nsp2211S211StcTtcG1717P.10.000268
ORF1ab/nsp2211S211StcTtcG1113B.1.360.001605
ORF1ab/nsp2211S211StcTtcG510AY.30.00005
ORF1ab/nsp2211S211StcTtcG38AY.430.000013
ORF1ab/nsp2211S211StcTtcG88B.1.1.390.004077
ORF1ab/nsp2211S211StcTtcG15B.1.5960.000087
ORF1ab/nsp2211S211StcTtcG24AY.1030.000012
ORF1ab/nsp2211S211StcTtcG13AY.39.10.00004
ORF1ab/nsp2211S211StcTtcG33AY.840.001312
ORF1ab/nsp2211S211StcTtcG22B.1.1.2140.000111
ORF1ab/nsp2211S211StcTtcG22B.1.3110.000549
ORF1ab/nsp2211S211StcTtcG22B.1.5720.05
ORF1ab/nsp2211S211StcTtcG22B.30.001661
ORF1ab/nsp2211S211StcTtcG11AY.420.00004
ORF1ab/nsp2211S211StcTtcG11AY.460.000104
ORF1ab/nsp2211S211StcTtcG11AY.920.000287
ORF1ab/nsp2211S211StcTtcG11B.1.1.500.000679
ORF1ab/nsp2211S211StcTtcG11B.1.2580.000067
ORF1ab/nsp2211S211StcTtcG11B.1.438.10.000107
ORF1ab/nsp2211S211StcTtcG11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.