CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 211 & Codon = tcC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2211S211SS391SsyntcTtcC11987610.6352251436-1438

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2211S211StcTtcC7611198All0.000146
ORF1ab/nsp2211S211StcTtcC349353B.1.20.003073
ORF1ab/nsp2211S211StcTtcC164171AY.40.000255
ORF1ab/nsp2211S211StcTtcC61124B.1.1.70.000055
ORF1ab/nsp2211S211StcTtcC152B.1.4270.00005
ORF1ab/nsp2211S211StcTtcC4449AY.440.000268
ORF1ab/nsp2211S211StcTtcC433AY.1180.000251
ORF1ab/nsp2211S211StcTtcC2433B.1.617.20.00009
ORF1ab/nsp2211S211StcTtcC322B.1.10.000054
ORF1ab/nsp2211S211StcTtcC418B.10.000037
ORF1ab/nsp2211S211StcTtcC1717AY.470.000529
ORF1ab/nsp2211S211StcTtcC113B.1.360.000146
ORF1ab/nsp2211S211StcTtcC110AY.30.00001
ORF1ab/nsp2211S211StcTtcC88AY.250.000048
ORF1ab/nsp2211S211StcTtcC58AY.430.000022
ORF1ab/nsp2211S211StcTtcC88B.1.1.4320.010127
ORF1ab/nsp2211S211StcTtcC78B.1.2210.000497
ORF1ab/nsp2211S211StcTtcC56R.10.00045
ORF1ab/nsp2211S211StcTtcC55AY.98.10.000242
ORF1ab/nsp2211S211StcTtcC45B.1.5960.000349
ORF1ab/nsp2211S211StcTtcC24AY.1030.000012
ORF1ab/nsp2211S211StcTtcC44AY.200.000155
ORF1ab/nsp2211S211StcTtcC44B.1.1770.000053
ORF1ab/nsp2211S211StcTtcC44B.1.36.180.001681
ORF1ab/nsp2211S211StcTtcC33AY.1200.000112
ORF1ab/nsp2211S211StcTtcC13AY.39.10.00004
ORF1ab/nsp2211S211StcTtcC33AY.9.20.00011
ORF1ab/nsp2211S211StcTtcC22AY.1020.000053
ORF1ab/nsp2211S211StcTtcC22AY.610.00021
ORF1ab/nsp2211S211StcTtcC22B.1.177.90.002663
ORF1ab/nsp2211S211StcTtcC11AY.1000.000046
ORF1ab/nsp2211S211StcTtcC11AY.140.000088
ORF1ab/nsp2211S211StcTtcC11AY.260.000028
ORF1ab/nsp2211S211StcTtcC11AY.290.000016
ORF1ab/nsp2211S211StcTtcC11AY.4.20.000022
ORF1ab/nsp2211S211StcTtcC11AY.520.000814
ORF1ab/nsp2211S211StcTtcC11AY.540.000095
ORF1ab/nsp2211S211StcTtcC11AY.660.00107
ORF1ab/nsp2211S211StcTtcC11AY.90.000068
ORF1ab/nsp2211S211StcTtcC11AY.990.001049
ORF1ab/nsp2211S211StcTtcC11B.1.1.2220.000204
ORF1ab/nsp2211S211StcTtcC11B.1.1.2270.004348
ORF1ab/nsp2211S211StcTtcC11B.1.1.2840.000107
ORF1ab/nsp2211S211StcTtcC11B.1.1.2980.000862
ORF1ab/nsp2211S211StcTtcC11B.1.1.5190.00004
ORF1ab/nsp2211S211StcTtcC11B.1.177.160.000664
ORF1ab/nsp2211S211StcTtcC11B.1.2430.00007
ORF1ab/nsp2211S211StcTtcC11B.1.351.30.000876
ORF1ab/nsp2211S211StcTtcC11B.1.5250.000113

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.