CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 211 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2211S211FS391FnonsyntCttTt530853050.9994351436-1438

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2211S211FtCttTt53055308All0.001015
ORF1ab/nsp2211S211FtCttTt13611361AY.290.021468
ORF1ab/nsp2211S211FtCttTt462462B.1.1.70.000414
ORF1ab/nsp2211S211FtCttTt447447AY.440.002721
ORF1ab/nsp2211S211FtCttTt296296AY.40.000461
ORF1ab/nsp2211S211FtCttTt269269B.1.1.1710.988971
ORF1ab/nsp2211S211FtCttTt252252B.1.1770.003318
ORF1ab/nsp2211S211FtCttTt144144AY.1030.000894
ORF1ab/nsp2211S211FtCttTt142142AY.430.000629
ORF1ab/nsp2211S211FtCttTt141141B.1.617.20.000531
ORF1ab/nsp2211S211FtCttTt136136AY.250.000818
ORF1ab/nsp2211S211FtCttTt113113B.1.20.000995
ORF1ab/nsp2211S211FtCttTt9393B.1.1.5190.003693
ORF1ab/nsp2211S211FtCttTt9292B.1.3560.158895
ORF1ab/nsp2211S211FtCttTt7070B.1.2580.004658
ORF1ab/nsp2211S211FtCttTt6868B.10.000623
ORF1ab/nsp2211S211FtCttTt6060B.1.2390.07326
ORF1ab/nsp2211S211FtCttTt5959P.10.000929
ORF1ab/nsp2211S211FtCttTt5353B.1.2210.003765
ORF1ab/nsp2211S211FtCttTt5050B.1.4290.001176
ORF1ab/nsp2211S211FtCttTt4141AY.4.20.000889
ORF1ab/nsp2211S211FtCttTt3939AY.30.000388
ORF1ab/nsp2211S211FtCttTt3737B.1.3620.057011
ORF1ab/nsp2211S211FtCttTt3535B.1.1600.001092
ORF1ab/nsp2211S211FtCttTt3030B.1.10.000544
ORF1ab/nsp2211S211FtCttTt2929AY.750.001625
ORF1ab/nsp2211S211FtCttTt2525AY.470.000778
ORF1ab/nsp2211S211FtCttTt2525B.1.1.4320.031646
ORF1ab/nsp2211S211FtCttTt2424AY.50.000496
ORF1ab/nsp2211S211FtCttTt2222AY.1200.000818
ORF1ab/nsp2211S211FtCttTt2222B.1.214.20.013189
ORF1ab/nsp2211S211FtCttTt2222B.1.3750.018033
ORF1ab/nsp2211S211FtCttTt1717AY.20.006054
ORF1ab/nsp2211S211FtCttTt1616AY.350.003729
ORF1ab/nsp2211S211FtCttTt1616B.1.177.80.012039
ORF1ab/nsp2211S211FtCttTt1515R.10.00135
ORF1ab/nsp2211S211FtCttTt1414AY.1190.000494
ORF1ab/nsp2211S211FtCttTt1414AY.260.000396
ORF1ab/nsp2211S211FtCttTt1414B.1.360.002043
ORF1ab/nsp2211S211FtCttTt1414B.1.5260.000329
ORF1ab/nsp2211S211FtCttTt1313AY.270.000841
ORF1ab/nsp2211S211FtCttTt1212P.1.70.003831
ORF1ab/nsp2211S211FtCttTt1111AY.1020.000292
ORF1ab/nsp2211S211FtCttTt1111AY.200.000428
ORF1ab/nsp2211S211FtCttTt1111AY.98.10.000533
ORF1ab/nsp2211S211FtCttTt1111B.1.177.210.000841
ORF1ab/nsp2211S211FtCttTt1010AY.1000.00046
ORF1ab/nsp2211S211FtCttTt1010AY.60.000411
ORF1ab/nsp2211S211FtCttTt1010B.1.1.4860.015773
ORF1ab/nsp2211S211FtCttTt99B.1.1.3260.015845
ORF1ab/nsp2211S211FtCttTt88AY.230.000558
ORF1ab/nsp2211S211FtCttTt88AY.3.10.000682
ORF1ab/nsp2211S211FtCttTt88B.1.2340.001056
ORF1ab/nsp2211S211FtCttTt77AY.29.10.001544
ORF1ab/nsp2211S211FtCttTt77AY.330.000467
ORF1ab/nsp2211S211FtCttTt77AY.390.000173
ORF1ab/nsp2211S211FtCttTt77AY.940.003099
ORF1ab/nsp2211S211FtCttTt77B.1.177.810.001325
ORF1ab/nsp2211S211FtCttTt77B.1.177.870.005095
ORF1ab/nsp2211S211FtCttTt77B.1.4270.000353
ORF1ab/nsp2211S211FtCttTt77P.1.150.001626
ORF1ab/nsp2211S211FtCttTt66AY.460.000624
ORF1ab/nsp2211S211FtCttTt66AY.610.000629
ORF1ab/nsp2211S211FtCttTt66B.1.3510.000178
ORF1ab/nsp2211S211FtCttTt56B.1.36.290.002587
ORF1ab/nsp2211S211FtCttTt66P.1.140.000287
ORF1ab/nsp2211S211FtCttTt55AY.420.000201
ORF1ab/nsp2211S211FtCttTt55AY.450.000608
ORF1ab/nsp2211S211FtCttTt55AY.46.60.000361
ORF1ab/nsp2211S211FtCttTt55AY.640.002976
ORF1ab/nsp2211S211FtCttTt55AY.90.000338
ORF1ab/nsp2211S211FtCttTt55AY.9.20.000184
ORF1ab/nsp2211S211FtCttTt55B0.000639
ORF1ab/nsp2211S211FtCttTt55B.1.1.2140.000277
ORF1ab/nsp2211S211FtCttTt55B.1.1.3170.002058
ORF1ab/nsp2211S211FtCttTt55B.1.177.350.003455
ORF1ab/nsp2211S211FtCttTt55B.1.3960.003529
ORF1ab/nsp2211S211FtCttTt55B.1.5960.000436
ORF1ab/nsp2211S211FtCttTt55B.1.617.10.000645
ORF1ab/nsp2211S211FtCttTt55Q.80.000825
ORF1ab/nsp2211S211FtCttTt240.111111
ORF1ab/nsp2211S211FtCttTt44A0.001548
ORF1ab/nsp2211S211FtCttTt44AY.39.10.000158
ORF1ab/nsp2211S211FtCttTt44AY.410.001176
ORF1ab/nsp2211S211FtCttTt44AY.5.40.001107
ORF1ab/nsp2211S211FtCttTt44B.1.1.10.001307
ORF1ab/nsp2211S211FtCttTt44B.1.177.540.002426
ORF1ab/nsp2211S211FtCttTt44B.1.4090.003125
ORF1ab/nsp2211S211FtCttTt44B.1.5870.00759
ORF1ab/nsp2211S211FtCttTt44P.20.000747
ORF1ab/nsp2211S211FtCttTt33AY.1180.000188
ORF1ab/nsp2211S211FtCttTt33AY.1210.000406
ORF1ab/nsp2211S211FtCttTt33AY.16.10.00141
ORF1ab/nsp2211S211FtCttTt33AY.590.001589
ORF1ab/nsp2211S211FtCttTt33B.1.1.2160.002671
ORF1ab/nsp2211S211FtCttTt33B.1.1.2220.000612
ORF1ab/nsp2211S211FtCttTt33B.1.1.3480.002389
ORF1ab/nsp2211S211FtCttTt33B.1.1.390.001529
ORF1ab/nsp2211S211FtCttTt33B.1.110.30.002155
ORF1ab/nsp2211S211FtCttTt33B.1.1470.002268
ORF1ab/nsp2211S211FtCttTt33B.1.160.160.002788
ORF1ab/nsp2211S211FtCttTt33B.1.177.40.000633
ORF1ab/nsp2211S211FtCttTt33B.1.177.580.003995
ORF1ab/nsp2211S211FtCttTt33B.1.3110.000824
ORF1ab/nsp2211S211FtCttTt33B.1.4060.018182
ORF1ab/nsp2211S211FtCttTt33C.370.000348
ORF1ab/nsp2211S211FtCttTt33Q.10.000379
ORF1ab/nsp2211S211FtCttTt22AU.30.004219
ORF1ab/nsp2211S211FtCttTt22AY.10.000791
ORF1ab/nsp2211S211FtCttTt22AY.1170.000169
ORF1ab/nsp2211S211FtCttTt22AY.120.10.000642
ORF1ab/nsp2211S211FtCttTt22AY.160.000759
ORF1ab/nsp2211S211FtCttTt22AY.210.003795
ORF1ab/nsp2211S211FtCttTt22AY.370.000632
ORF1ab/nsp2211S211FtCttTt22AY.4.40.000818
ORF1ab/nsp2211S211FtCttTt22AY.5.30.000675
ORF1ab/nsp2211S211FtCttTt22AY.540.000191
ORF1ab/nsp2211S211FtCttTt22AY.690.000373
ORF1ab/nsp2211S211FtCttTt22AY.700.000417
ORF1ab/nsp2211S211FtCttTt22AY.840.000875
ORF1ab/nsp2211S211FtCttTt22AY.9.10.000167
ORF1ab/nsp2211S211FtCttTt22AY.980.000158
ORF1ab/nsp2211S211FtCttTt22B.1.1.2070.002364
ORF1ab/nsp2211S211FtCttTt22B.1.1.2410.004141
ORF1ab/nsp2211S211FtCttTt22B.1.1.280.000622
ORF1ab/nsp2211S211FtCttTt22B.1.1.3010.002358
ORF1ab/nsp2211S211FtCttTt22B.1.1.3110.000716
ORF1ab/nsp2211S211FtCttTt22B.1.1.3300.125
ORF1ab/nsp2211S211FtCttTt22B.1.177.230.006472
ORF1ab/nsp2211S211FtCttTt22B.1.177.730.001133
ORF1ab/nsp2211S211FtCttTt22B.1.258.170.000208
ORF1ab/nsp2211S211FtCttTt22B.1.3330.021053
ORF1ab/nsp2211S211FtCttTt22B.1.36.10.002281
ORF1ab/nsp2211S211FtCttTt22B.1.36.310.003503
ORF1ab/nsp2211S211FtCttTt22B.1.4460.04
ORF1ab/nsp2211S211FtCttTt22B.1.466.20.000782
ORF1ab/nsp2211S211FtCttTt22D.20.00015
ORF1ab/nsp2211S211FtCttTt22Q.30.00029
ORF1ab/nsp2211S211FtCttTt11A.2.50.000499
ORF1ab/nsp2211S211FtCttTt11AA.40.009091
ORF1ab/nsp2211S211FtCttTt11AN.10.02
ORF1ab/nsp2211S211FtCttTt11AT.10.005128
ORF1ab/nsp2211S211FtCttTt11AY.1070.000466
ORF1ab/nsp2211S211FtCttTt11AY.1080.001103
ORF1ab/nsp2211S211FtCttTt11AY.1100.000113
ORF1ab/nsp2211S211FtCttTt11AY.1130.000142
ORF1ab/nsp2211S211FtCttTt11AY.1140.000231
ORF1ab/nsp2211S211FtCttTt11AY.1160.000287
ORF1ab/nsp2211S211FtCttTt11AY.240.000431
ORF1ab/nsp2211S211FtCttTt11AY.320.000532
ORF1ab/nsp2211S211FtCttTt11AY.340.000097
ORF1ab/nsp2211S211FtCttTt11AY.380.000499
ORF1ab/nsp2211S211FtCttTt11AY.4.50.000107
ORF1ab/nsp2211S211FtCttTt11AY.46.50.000198
ORF1ab/nsp2211S211FtCttTt11AY.480.000465
ORF1ab/nsp2211S211FtCttTt11AY.530.000288
ORF1ab/nsp2211S211FtCttTt11AY.560.001605
ORF1ab/nsp2211S211FtCttTt11AY.620.000436
ORF1ab/nsp2211S211FtCttTt11AY.680.000274
ORF1ab/nsp2211S211FtCttTt11AY.7.10.000113
ORF1ab/nsp2211S211FtCttTt11AY.75.10.00018
ORF1ab/nsp2211S211FtCttTt11AY.790.001211
ORF1ab/nsp2211S211FtCttTt11AY.80.000606
ORF1ab/nsp2211S211FtCttTt11AY.990.001049
ORF1ab/nsp2211S211FtCttTt11AY.99.20.000092
ORF1ab/nsp2211S211FtCttTt11AZ.10.000867
ORF1ab/nsp2211S211FtCttTt11B.1.1.1130.006993
ORF1ab/nsp2211S211FtCttTt11B.1.1.1860.003436
ORF1ab/nsp2211S211FtCttTt11B.1.1.1890.001513
ORF1ab/nsp2211S211FtCttTt11B.1.1.1980.001468
ORF1ab/nsp2211S211FtCttTt11B.1.1.2170.003636
ORF1ab/nsp2211S211FtCttTt11B.1.1.2270.004348
ORF1ab/nsp2211S211FtCttTt11B.1.1.3180.000302
ORF1ab/nsp2211S211FtCttTt11B.1.1.3330.001076
ORF1ab/nsp2211S211FtCttTt11B.1.1.3970.002252
ORF1ab/nsp2211S211FtCttTt11B.1.1.4160.000905
ORF1ab/nsp2211S211FtCttTt11B.1.1.4330.001425
ORF1ab/nsp2211S211FtCttTt11B.1.1.540.003021
ORF1ab/nsp2211S211FtCttTt11B.1.1490.003425
ORF1ab/nsp2211S211FtCttTt11B.1.160.140.002119
ORF1ab/nsp2211S211FtCttTt11B.1.177.170.000821
ORF1ab/nsp2211S211FtCttTt11B.1.177.440.000519
ORF1ab/nsp2211S211FtCttTt11B.1.177.50.001242
ORF1ab/nsp2211S211FtCttTt11B.1.177.520.001757
ORF1ab/nsp2211S211FtCttTt11B.1.177.550.002331
ORF1ab/nsp2211S211FtCttTt11B.1.177.570.000281
ORF1ab/nsp2211S211FtCttTt11B.1.177.60.000977
ORF1ab/nsp2211S211FtCttTt11B.1.177.70.000165
ORF1ab/nsp2211S211FtCttTt11B.1.177.720.00339
ORF1ab/nsp2211S211FtCttTt11B.1.177.770.000726
ORF1ab/nsp2211S211FtCttTt11B.1.1950.005025
ORF1ab/nsp2211S211FtCttTt11B.1.2320.000537
ORF1ab/nsp2211S211FtCttTt11B.1.2360.002053
ORF1ab/nsp2211S211FtCttTt11B.1.2400.000216
ORF1ab/nsp2211S211FtCttTt11B.1.2410.000812
ORF1ab/nsp2211S211FtCttTt11B.1.2430.00007
ORF1ab/nsp2211S211FtCttTt11B.1.258.30.001675
ORF1ab/nsp2211S211FtCttTt11B.1.3060.005714
ORF1ab/nsp2211S211FtCttTt11B.1.3350.010309
ORF1ab/nsp2211S211FtCttTt11B.1.36.160.001425
ORF1ab/nsp2211S211FtCttTt11B.1.36.180.00042
ORF1ab/nsp2211S211FtCttTt11B.1.3670.000792
ORF1ab/nsp2211S211FtCttTt11B.1.3780.006849
ORF1ab/nsp2211S211FtCttTt11B.1.3850.010638
ORF1ab/nsp2211S211FtCttTt11B.1.4160.001269
ORF1ab/nsp2211S211FtCttTt11B.1.416.10.001563
ORF1ab/nsp2211S211FtCttTt11B.1.438.10.000107
ORF1ab/nsp2211S211FtCttTt11B.1.4590.004082
ORF1ab/nsp2211S211FtCttTt11B.1.4710.002732
ORF1ab/nsp2211S211FtCttTt11B.1.4740.001901
ORF1ab/nsp2211S211FtCttTt11B.1.4780.011765
ORF1ab/nsp2211S211FtCttTt11B.1.5270.003704
ORF1ab/nsp2211S211FtCttTt11B.1.5330.009615
ORF1ab/nsp2211S211FtCttTt11B.1.5510.00129
ORF1ab/nsp2211S211FtCttTt11B.1.5750.000303
ORF1ab/nsp2211S211FtCttTt11B.1.6090.000479
ORF1ab/nsp2211S211FtCttTt11B.1.619.10.000641
ORF1ab/nsp2211S211FtCttTt11B.1.6210.000089
ORF1ab/nsp2211S211FtCttTt11B.1.6370.000073
ORF1ab/nsp2211S211FtCttTt11B.280.003279
ORF1ab/nsp2211S211FtCttTt11B.6.60.000889
ORF1ab/nsp2211S211FtCttTt11C.140.004329
ORF1ab/nsp2211S211FtCttTt11N.50.001767
ORF1ab/nsp2211S211FtCttTt11P.1.10.000318
ORF1ab/nsp2211S211FtCttTt11P.1.120.000484
ORF1ab/nsp2211S211FtCttTt11P.40.003802

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.