CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 211 & Codon = Cct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2211S211PS391PnonsynTctCct13313311436-1438

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2211S211PTctCct133133All0.000025
ORF1ab/nsp2211S211PTctCct3838AY.40.000059
ORF1ab/nsp2211S211PTctCct1515B.1.1.70.000013
ORF1ab/nsp2211S211PTctCct99B.1.351.20.002723
ORF1ab/nsp2211S211PTctCct66AY.260.00017
ORF1ab/nsp2211S211PTctCct66B.1.617.20.000023
ORF1ab/nsp2211S211PTctCct55B.1.3510.000149
ORF1ab/nsp2211S211PTctCct44AY.390.000099
ORF1ab/nsp2211S211PTctCct44B.1.177.560.00267
ORF1ab/nsp2211S211PTctCct33AY.1180.000188
ORF1ab/nsp2211S211PTctCct33AY.430.000013
ORF1ab/nsp2211S211PTctCct33AY.440.000018
ORF1ab/nsp2211S211PTctCct33B.1.20.000026
ORF1ab/nsp2211S211PTctCct33B.1.360.000438
ORF1ab/nsp2211S211PTctCct22AY.60.000082
ORF1ab/nsp2211S211PTctCct22AY.98.10.000097
ORF1ab/nsp2211S211PTctCct22B.1.1600.000062
ORF1ab/nsp2211S211PTctCct22B.1.1770.000026
ORF1ab/nsp2211S211PTctCct22B.1.5250.000226
ORF1ab/nsp2211S211PTctCct22P.1.140.000096
ORF1ab/nsp2211S211PTctCct11AY.1000.000046
ORF1ab/nsp2211S211PTctCct11AY.1030.000006
ORF1ab/nsp2211S211PTctCct11AY.1170.000085
ORF1ab/nsp2211S211PTctCct11AY.200.000039
ORF1ab/nsp2211S211PTctCct11AY.420.00004
ORF1ab/nsp2211S211PTctCct11AY.470.000031
ORF1ab/nsp2211S211PTctCct11AY.5.30.000337
ORF1ab/nsp2211S211PTctCct11AY.590.00053
ORF1ab/nsp2211S211PTctCct11AY.620.000436
ORF1ab/nsp2211S211PTctCct11B.10.000009
ORF1ab/nsp2211S211PTctCct11B.1.10.000018
ORF1ab/nsp2211S211PTctCct11B.1.1.370.000193
ORF1ab/nsp2211S211PTctCct11B.1.177.230.003236
ORF1ab/nsp2211S211PTctCct11B.1.36.380.001642
ORF1ab/nsp2211S211PTctCct11B.1.4290.000024
ORF1ab/nsp2211S211PTctCct11B.1.5030.002488
ORF1ab/nsp2211S211PTctCct11B.1.5260.000024
ORF1ab/nsp2211S211PTctCct11B.1.5960.000087
ORF1ab/nsp2211S211PTctCct11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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