CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 21

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp221I21VI201VnonsynAttGtt6616590.996974866-868
ORF1ab/nsp221I21VI201VnonsynAtTGtC66120.00302572866-868
ORF1ab/nsp221I21II201IsynatTatC3552310.650704866-868
ORF1ab/nsp221I21II201IsynatTatA3551240.349296866-868
ORF1ab/nsp221I21delI201deldelATT---37371866-868
ORF1ab/nsp221I21FI201FnonsynAttTtt25251866-868
ORF1ab/nsp221I21LI201LnonsynAttCtt11111866-868
ORF1ab/nsp221I21TI201TnonsynaTtaCt870.875866-868
ORF1ab/nsp221I21TI201TnonsynaTTaCC810.125866-868
ORF1ab/nsp221I21SI201SnonsynaTtaGt430.75866-868
ORF1ab/nsp221I21SI201SnonsynaTTaGC410.25866-868
ORF1ab/nsp221I21MI201MnonsynatTatG331866-868
ORF1ab/nsp221I21GI201GnonsynATtGGt320.666667866-868
ORF1ab/nsp221I21GI201GnonsynATTGGC310.333333866-868
ORF1ab/nsp221I21NI201NnonsynaTtaAt221866-868
ORF1ab/nsp221I21XI201XnonsynATTTAG111866-868
ORF1ab/nsp221I21del1I201del1delATtG-t111866-868

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp221I21VAttGtt659661All0.000126
ORF1ab/nsp221I21VAtTGtC2661All0
ORF1ab/nsp221I21VAttGtt479480B.1.1.5190.019022
ORF1ab/nsp221I21VAtTGtC1480B.1.1.5190.00004
ORF1ab/nsp221I21IatTatC231355All0.000044
ORF1ab/nsp221I21IatTatA124355All0.000024
ORF1ab/nsp221I21IatTatA6062AY.430.000266
ORF1ab/nsp221I21IatTatC262AY.430.000009
ORF1ab/nsp221I21IatTatC5252B.1.3490.037169
ORF1ab/nsp221I21IatTatC3445B.1.1.70.00003
ORF1ab/nsp221I21IatTatA1145B.1.1.70.00001
ORF1ab/nsp221I21IatTatC3738AY.440.000225
ORF1ab/nsp221I21IatTatA138AY.440.000006
ORF1ab/nsp221I21delATT---3737All0.000007
ORF1ab/nsp221I21VAttGtt2828B.1.1.70.000025
ORF1ab/nsp221I21FAttTtt2525All0.000005
ORF1ab/nsp221I21VAttGtt2222AY.40.000034
ORF1ab/nsp221I21IatTatA2222B.1.617.20.000083
ORF1ab/nsp221I21VAttGtt2121AY.430.000093
ORF1ab/nsp221I21IatTatC2020B.1.1.700.006821
ORF1ab/nsp221I21IatTatC1616B.1.177.830.023704
ORF1ab/nsp221I21IatTatA1414AY.390.000346
ORF1ab/nsp221I21IatTatC1414B.1.20.000123
ORF1ab/nsp221I21LAttCtt1111All0.000002
ORF1ab/nsp221I21IatTatC1111AY.1200.000409
ORF1ab/nsp221I21VAttGtt1010B.1.617.20.000038
ORF1ab/nsp221I21FAttTtt99AY.40.000014
ORF1ab/nsp221I21VAttGtt99B.1.10.000163
ORF1ab/nsp221I21TaTtaCt78All0.000001
ORF1ab/nsp221I21TaTTaCC18All0
ORF1ab/nsp221I21VAttGtt88AY.250.000048
ORF1ab/nsp221I21VAttGtt77AY.30.00007
ORF1ab/nsp221I21IatTatC57AY.40.000008
ORF1ab/nsp221I21IatTatA27AY.40.000003
ORF1ab/nsp221I21VAttGtt77B.1.4860.777778
ORF1ab/nsp221I21LAttCtt66B.1.1.70.000005
ORF1ab/nsp221I21IatTatA55AY.1020.000133
ORF1ab/nsp221I21VAttGtt55B.1.1.2220.00102
ORF1ab/nsp221I21VAttGtt55B.1.1.280.001556
ORF1ab/nsp221I21delATT---55B.1.1.330.002104
ORF1ab/nsp221I21delATT---55B.1.1.70.000004
ORF1ab/nsp221I21IatTatC55B.1.1770.000066
ORF1ab/nsp221I21VAttGtt55B.1.177.150.003155
ORF1ab/nsp221I21SaTtaGt34All0.000001
ORF1ab/nsp221I21SaTTaGC14All0
ORF1ab/nsp221I21VAttGtt44AY.440.000024
ORF1ab/nsp221I21VAttGtt44B.10.000037
ORF1ab/nsp221I21IatTatC24B.10.000018
ORF1ab/nsp221I21IatTatA24B.10.000018
ORF1ab/nsp221I21delATT---44B.1.1.3480.003185
ORF1ab/nsp221I21IatTatC44B.1.4290.000094
ORF1ab/nsp221I21MatTatG33All0.000001
ORF1ab/nsp221I21GATtGGt23All0
ORF1ab/nsp221I21GATTGGC13All0
ORF1ab/nsp221I21IatTatA33AY.120.000948
ORF1ab/nsp221I21IatTatC33AY.470.000093
ORF1ab/nsp221I21VAttGtt33AY.98.10.000145
ORF1ab/nsp221I21FAttTtt33B.1.1.3110.001074
ORF1ab/nsp221I21VAttGtt33Q.10.000379
ORF1ab/nsp221I21SaTTaGC120.055556
ORF1ab/nsp221I21SaTtaGt120.055556
ORF1ab/nsp221I21VAttGtt120.055556
ORF1ab/nsp221I21VAtTGtC120.055556
ORF1ab/nsp221I21GATtGGt120.055556
ORF1ab/nsp221I21GATTGGC120.055556
ORF1ab/nsp221I21NaTtaAt22All0
ORF1ab/nsp221I21VAttGtt22AY.1000.000092
ORF1ab/nsp221I21VAttGtt22AY.1030.000012
ORF1ab/nsp221I21IatTatC22AY.230.000139
ORF1ab/nsp221I21IatTatC22AY.250.000012
ORF1ab/nsp221I21FAttTtt22AZ.10.001735
ORF1ab/nsp221I21LAttCtt22B.10.000018
ORF1ab/nsp221I21IatTatC22B.1.1.2650.006309
ORF1ab/nsp221I21IatTatC22B.1.1.330.000842
ORF1ab/nsp221I21VAttGtt22B.1.177.100.001756
ORF1ab/nsp221I21VAttGtt22B.1.177.120.000303
ORF1ab/nsp221I21FAttTtt22B.1.177.20.009091
ORF1ab/nsp221I21TaTtaCt12B.1.2210.000071
ORF1ab/nsp221I21TaTTaCC12B.1.2210.000071
ORF1ab/nsp221I21FAttTtt22B.1.6050.011905
ORF1ab/nsp221I21FAttTtt22B.1.617.20.000008
ORF1ab/nsp221I21delATT---22B.1.617.20.000008
ORF1ab/nsp221I21delATT---22N.40.008511
ORF1ab/nsp221I21delATT---22N.60.014184
ORF1ab/nsp221I21IatTatC22P.10.000032
ORF1ab/nsp221I21delATT---22P.20.000373
ORF1ab/nsp221I21IatTatC110.055556
ORF1ab/nsp221I21delATT---11A.2.20.001689
ORF1ab/nsp221I21XATTTAG11All0
ORF1ab/nsp221I21del1ATtG-t11All0
ORF1ab/nsp221I21TaTtaCt11AU.10.001266
ORF1ab/nsp221I21VAttGtt11AY.1020.000027
ORF1ab/nsp221I21delATT---11AY.1110.000183
ORF1ab/nsp221I21FAttTtt11AY.1130.000142
ORF1ab/nsp221I21VAttGtt11AY.1180.000063
ORF1ab/nsp221I21IatTatC11AY.160.00038
ORF1ab/nsp221I21VAttGtt11AY.200.000039
ORF1ab/nsp221I21VAttGtt11AY.230.00007
ORF1ab/nsp221I21delATT---11AY.250.000006
ORF1ab/nsp221I21IatTatC11AY.260.000028
ORF1ab/nsp221I21VAttGtt11AY.260.000028
ORF1ab/nsp221I21VAttGtt11AY.3.10.000085
ORF1ab/nsp221I21FAttTtt11AY.330.000067
ORF1ab/nsp221I21VAttGtt11AY.360.000148
ORF1ab/nsp221I21VAttGtt11AY.390.000025
ORF1ab/nsp221I21IatTatC11AY.39.10.00004
ORF1ab/nsp221I21LAttCtt11AY.40.000002
ORF1ab/nsp221I21TaTtaCt11AY.40.000002
ORF1ab/nsp221I21TaTtaCt11AY.4.20.000022
ORF1ab/nsp221I21NaTtaAt11AY.440.000006
ORF1ab/nsp221I21LAttCtt11AY.440.000006
ORF1ab/nsp221I21VAttGtt11AY.460.000104
ORF1ab/nsp221I21VAttGtt11AY.46.40.000165
ORF1ab/nsp221I21IatTatA11AY.46.60.000072
ORF1ab/nsp221I21VAttGtt11AY.470.000031
ORF1ab/nsp221I21IatTatC11AY.50.000021
ORF1ab/nsp221I21IatTatC11AY.60.000041
ORF1ab/nsp221I21SaTtaGt11AY.610.000105
ORF1ab/nsp221I21VAttGtt11AY.610.000105
ORF1ab/nsp221I21FAttTtt11AY.620.000436
ORF1ab/nsp221I21GATtGGt11AY.670.000464
ORF1ab/nsp221I21IatTatC11AY.800.001129
ORF1ab/nsp221I21VAttGtt11AY.860.00083
ORF1ab/nsp221I21delATT---11AY.9.20.000037
ORF1ab/nsp221I21IatTatA11AY.920.000287
ORF1ab/nsp221I21VAttGtt11AY.950.000761
ORF1ab/nsp221I21IatTatC11AY.98.10.000048
ORF1ab/nsp221I21delATT---11AY.99.10.001553
ORF1ab/nsp221I21del1ATtG-t11B0.000128
ORF1ab/nsp221I21delATT---11B.10.000009
ORF1ab/nsp221I21MatTatG11B.10.000009
ORF1ab/nsp221I21IatTatC11B.1.10.000018
ORF1ab/nsp221I21MatTatG11B.1.1.10.000327
ORF1ab/nsp221I21VAttGtt11B.1.1.1750.076923
ORF1ab/nsp221I21LAttCtt11B.1.1.2140.000055
ORF1ab/nsp221I21VAttGtt11B.1.1.2140.000055
ORF1ab/nsp221I21VAttGtt11B.1.1.2360.006897
ORF1ab/nsp221I21VAttGtt11B.1.1.3260.001761
ORF1ab/nsp221I21IatTatC11B.1.1.3690.000446
ORF1ab/nsp221I21delATT---11B.1.1.4200.001006
ORF1ab/nsp221I21TaTtaCt11B.1.1.70.000001
ORF1ab/nsp221I21MatTatG11B.1.1.70.000001
ORF1ab/nsp221I21delATT---11B.1.1.700.000341
ORF1ab/nsp221I21SaTtaGt11B.1.1600.000031
ORF1ab/nsp221I21FAttTtt11B.1.1770.000013
ORF1ab/nsp221I21VAttGtt11B.1.1770.000013
ORF1ab/nsp221I21VAttGtt11B.1.177.240.001295
ORF1ab/nsp221I21XATTTAG11B.1.177.440.000519
ORF1ab/nsp221I21delATT---11B.1.177.540.000606
ORF1ab/nsp221I21delATT---11B.1.177.830.001481
ORF1ab/nsp221I21IatTatC11B.1.2210.000071
ORF1ab/nsp221I21delATT---11B.1.230.006061
ORF1ab/nsp221I21VAttGtt11B.1.2580.000067
ORF1ab/nsp221I21VAttGtt11B.1.2910.019231
ORF1ab/nsp221I21IatTatC11B.1.3110.000275
ORF1ab/nsp221I21VAttGtt11B.1.3510.00003
ORF1ab/nsp221I21IatTatC11B.1.351.50.0006
ORF1ab/nsp221I21NaTtaAt11B.1.36.180.00042
ORF1ab/nsp221I21IatTatA11B.1.36.350.002604
ORF1ab/nsp221I21TaTtaCt11B.1.36.70.004
ORF1ab/nsp221I21TaTtaCt11B.1.3910.001127
ORF1ab/nsp221I21FAttTtt11B.1.3960.000706
ORF1ab/nsp221I21delATT---11B.1.4270.00005
ORF1ab/nsp221I21delATT---11B.1.4290.000024
ORF1ab/nsp221I21VAttGtt11B.1.4680.005714
ORF1ab/nsp221I21VAttGtt11B.1.5170.000427
ORF1ab/nsp221I21IatTatC11B.1.5260.000024
ORF1ab/nsp221I21VAttGtt11B.1.5580.004566
ORF1ab/nsp221I21VAttGtt11B.1.5640.000426
ORF1ab/nsp221I21VAttGtt11B.1.6090.000479
ORF1ab/nsp221I21IatTatC11B.1.617.10.000129
ORF1ab/nsp221I21delATT---11B.1.617.30.002985
ORF1ab/nsp221I21delATT---11C.350.000774
ORF1ab/nsp221I21VAttGtt11C.370.000116
ORF1ab/nsp221I21IatTatA11D.20.000075
ORF1ab/nsp221I21VAttGtt11P.1.150.000232
ORF1ab/nsp221I21IatTatC11R.10.00009