CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 208

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2208H208YH388YnonsynCatTat831083050.9993981427-1429
ORF1ab/nsp2208H208YH388YnonsynCaTTaC831050.0006016851427-1429
ORF1ab/nsp2208H208HH388HsyncaTcaC39639611427-1429
ORF1ab/nsp2208H208RH388RnonsyncAtcGt3443430.9970931427-1429
ORF1ab/nsp2208H208RH388RnonsyncATcGC34410.002906981427-1429
ORF1ab/nsp2208H208NH388NnonsynCatAat11911911427-1429
ORF1ab/nsp2208H208delH388deldelCAT---707011427-1429
ORF1ab/nsp2208H208LH388LnonsyncAtcTt68610.8970591427-1429
ORF1ab/nsp2208H208LH388LnonsyncATcTG6820.02941181427-1429
ORF1ab/nsp2208H208LH388LnonsyncATcTC6820.02941181427-1429
ORF1ab/nsp2208H208LH388LnonsynCATTTG6820.02941181427-1429
ORF1ab/nsp2208H208LH388LnonsyncATcTA6810.01470591427-1429
ORF1ab/nsp2208H208QH388QnonsyncaTcaA51430.8431371427-1429
ORF1ab/nsp2208H208QH388QnonsyncaTcaG5180.1568631427-1429
ORF1ab/nsp2208H208FH388FnonsynCAtTTt31290.9354841427-1429
ORF1ab/nsp2208H208FH388FnonsynCATTTC3120.06451611427-1429
ORF1ab/nsp2208H208CH388CnonsynCAtTGt7711427-1429
ORF1ab/nsp2208H208del1H388del1delCat-at640.6666671427-1429
ORF1ab/nsp2208H208del1H388del1delcAtc-t620.3333331427-1429
ORF1ab/nsp2208H208del2H388del2delCAt--t4411427-1429
ORF1ab/nsp2208H208XH388XnonsynCaTTaG2211427-1429
ORF1ab/nsp2208H208DH388DnonsynCatGat2211427-1429
ORF1ab/nsp2208H208TH388TnonsynCATACG1111427-1429
ORF1ab/nsp2208H208SH388SnonsynCATTCA1111427-1429

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2208H208YCatTat83058310All0.001588
ORF1ab/nsp2208H208YCaTTaC58310All0.000001
ORF1ab/nsp2208H208YCatTat36453645P.1.100.982215
ORF1ab/nsp2208H208YCatTat511511B.1.1.70.000457
ORF1ab/nsp2208H208YCatTat452452B.1.5650.366288
ORF1ab/nsp2208H208HcaTcaC396396All0.000076
ORF1ab/nsp2208H208RcAtcGt343344All0.000066
ORF1ab/nsp2208H208RcATcGC1344All0
ORF1ab/nsp2208H208RcAtcGt320320AY.1190.011299
ORF1ab/nsp2208H208YCatTat288288AY.40.000448
ORF1ab/nsp2208H208YCatTat240240B.1.617.20.000904
ORF1ab/nsp2208H208YCatTat234234AY.430.001037
ORF1ab/nsp2208H208YCatTat176176B.1.20.00155
ORF1ab/nsp2208H208YCatTat173174AY.1030.001074
ORF1ab/nsp2208H208YCaTTaC1174AY.1030.000006
ORF1ab/nsp2208H208YCatTat147147B.1.1770.001936
ORF1ab/nsp2208H208YCatTat141141AY.250.000848
ORF1ab/nsp2208H208NCatAat119119All0.000023
ORF1ab/nsp2208H208YCatTat115115AY.200.004469
ORF1ab/nsp2208H208YCatTat102102AY.30.001015
ORF1ab/nsp2208H208HcaTcaC100100AY.40.000156
ORF1ab/nsp2208H208YCatTat9797R.10.008731
ORF1ab/nsp2208H208YCatTat9393B.1.4270.004696
ORF1ab/nsp2208H208YCatTat9191B.1.1.2220.018564
ORF1ab/nsp2208H208YCatTat9090P.10.001418
ORF1ab/nsp2208H208YCatTat8989B.1.1.2541
ORF1ab/nsp2208H208YCatTat8585B.10.000779
ORF1ab/nsp2208H208YCatTat8282P.1.10.10.666667
ORF1ab/nsp2208H208HcaTcaC8080AY.440.000487
ORF1ab/nsp2208H208delCAT---7070All0.000013
ORF1ab/nsp2208H208LcAtcTt6168All0.000012
ORF1ab/nsp2208H208LCATTTG268All0
ORF1ab/nsp2208H208LcATcTC268All0
ORF1ab/nsp2208H208LcATcTG268All0
ORF1ab/nsp2208H208LcATcTA168All0
ORF1ab/nsp2208H208YCatTat6161B.1.1.3290.234615
ORF1ab/nsp2208H208NCatAat6060AY.40.000093
ORF1ab/nsp2208H208YCatTat5757AY.440.000347
ORF1ab/nsp2208H208QcaTcaA4351All0.000008
ORF1ab/nsp2208H208QcaTcaG851All0.000002
ORF1ab/nsp2208H208YCatTat5151B.1.3690.014546
ORF1ab/nsp2208H208YCatTat5151Q.10.006443
ORF1ab/nsp2208H208YCatTat4949AY.140.004313
ORF1ab/nsp2208H208YCatTat4343B.1.4290.001012
ORF1ab/nsp2208H208YCatTat3737B.1.5260.00087
ORF1ab/nsp2208H208LcAtcTt3535AY.260.000991
ORF1ab/nsp2208H208YCatTat3434AY.70.006664
ORF1ab/nsp2208H208YCatTat3434B.1.1.5070.295652
ORF1ab/nsp2208H208YCatTat3333AY.540.003146
ORF1ab/nsp2208H208YCatTat3333B.1.1600.001029
ORF1ab/nsp2208H208FCAtTTt2931All0.000006
ORF1ab/nsp2208H208FCATTTC231All0
ORF1ab/nsp2208H208YCatTat3030AY.1020.000795
ORF1ab/nsp2208H208YCatTat3030B.1.428.21
ORF1ab/nsp2208H208YCatTat2828AY.1180.001754
ORF1ab/nsp2208H208YCatTat2828AY.260.000793
ORF1ab/nsp2208H208HcaTcaC2828B.1.2580.001863
ORF1ab/nsp2208H208NCatAat2727AY.1000.001242
ORF1ab/nsp2208H208FCAtTTt2727AY.260.000764
ORF1ab/nsp2208H208QcaTcaA2727B.1.1600.000842
ORF1ab/nsp2208H208YCatTat2424AY.390.000593
ORF1ab/nsp2208H208YCatTat2424P.1.10.21
ORF1ab/nsp2208H208HcaTcaC2222B.1.1.70.00002
ORF1ab/nsp2208H208YCatTat2222B.1.1.700.007503
ORF1ab/nsp2208H208YCatTat2121AY.99.20.001935
ORF1ab/nsp2208H208HcaTcaC2121B.1.177.620.02503
ORF1ab/nsp2208H208YCatTat2121B.1.2210.001492
ORF1ab/nsp2208H208YCatTat1919B.1.2430.001322
ORF1ab/nsp2208H208HcaTcaC1818AY.250.000108
ORF1ab/nsp2208H208delCAT---1818B.1.1.70.000016
ORF1ab/nsp2208H208YCatTat1818B.1.3910.020293
ORF1ab/nsp2208H208NCatAat1818B.1.617.20.000068
ORF1ab/nsp2208H208YCatTat1616B.1.360.002334
ORF1ab/nsp2208H208YCatTat1515B.1.1.2740.075758
ORF1ab/nsp2208H208YCatTat1515B.1.1.5190.000596
ORF1ab/nsp2208H208YCatTat1515B.1.177.210.001147
ORF1ab/nsp2208H208YCatTat1515B.1.6370.001096
ORF1ab/nsp2208H208YCatTat1414AY.1190.000494
ORF1ab/nsp2208H208YCatTat1414AY.160.005315
ORF1ab/nsp2208H208YCatTat1414B.1.5610.005558
ORF1ab/nsp2208H208YCatTat1313P.1.140.000621
ORF1ab/nsp2208H208HcaTcaC1212AY.30.000119
ORF1ab/nsp2208H208YCatTat1212AY.4.20.00026
ORF1ab/nsp2208H208HcaTcaC1212B.1.10.000218
ORF1ab/nsp2208H208YCatTat1111AY.1200.000409
ORF1ab/nsp2208H208YCatTat1111AY.1210.001488
ORF1ab/nsp2208H208YCatTat1111AY.290.000174
ORF1ab/nsp2208H208QcaTcaA811AY.40.000012
ORF1ab/nsp2208H208QcaTcaG311AY.40.000005
ORF1ab/nsp2208H208YCatTat1111B.1.1.2840.001181
ORF1ab/nsp2208H208YCatTat1111B.1.3510.000327
ORF1ab/nsp2208H208YCatTat1111B.1.351.20.003328
ORF1ab/nsp2208H208YCatTat1111B.1.5250.001245
ORF1ab/nsp2208H208YCatTat99AY.1050.005788
ORF1ab/nsp2208H208YCatTat99AY.50.000186
ORF1ab/nsp2208H208YCatTat99B.1.10.000163
ORF1ab/nsp2208H208YCatTat99B.1.6210.000797
ORF1ab/nsp2208H208LcATcTC280.111111
ORF1ab/nsp2208H208LcATcTG280.111111
ORF1ab/nsp2208H208LCATTTG280.111111
ORF1ab/nsp2208H208LcAtcTt280.111111
ORF1ab/nsp2208H208YCatTat88AY.330.000534
ORF1ab/nsp2208H208YCatTat88AY.450.000973
ORF1ab/nsp2208H208YCatTat88B.1.1100.036199
ORF1ab/nsp2208H208HcaTcaC88B.1.1770.000105
ORF1ab/nsp2208H208YCatTat88B.1.2580.000532
ORF1ab/nsp2208H208YCatTat88B.1.6090.003835
ORF1ab/nsp2208H208HcaTcaC88B.1.617.20.00003
ORF1ab/nsp2208H208CCAtTGt77All0.000001
ORF1ab/nsp2208H208CCAtTGt77AY.1190.000247
ORF1ab/nsp2208H208HcaTcaC77AY.1190.000247
ORF1ab/nsp2208H208YCatTat77AY.120.002212
ORF1ab/nsp2208H208delCAT---77AY.40.000011
ORF1ab/nsp2208H208YCatTat77AY.4.50.000752
ORF1ab/nsp2208H208YCatTat77AY.750.000392
ORF1ab/nsp2208H208YCatTat77AY.770.007892
ORF1ab/nsp2208H208YCatTat77AY.98.10.000339
ORF1ab/nsp2208H208HcaTcaC77B.1.1.5190.000278
ORF1ab/nsp2208H208LcAtcTt77B.1.1.70.000006
ORF1ab/nsp2208H208YCatTat77B.1.5750.002124
ORF1ab/nsp2208H208YCaTTaC460.222222
ORF1ab/nsp2208H208YCatTat260.111111
ORF1ab/nsp2208H208del1Cat-at46All0.000001
ORF1ab/nsp2208H208del1cAtc-t26All0
ORF1ab/nsp2208H208YCatTat66AY.270.000388
ORF1ab/nsp2208H208HcaTcaC66AY.430.000027
ORF1ab/nsp2208H208YCatTat66AY.610.000629
ORF1ab/nsp2208H208HcaTcaC66AY.690.00112
ORF1ab/nsp2208H208YCatTat66B.1.1.2070.007092
ORF1ab/nsp2208H208RcAtcGt66B.1.1.70.000005
ORF1ab/nsp2208H208YCatTat66B.1.177.350.004147
ORF1ab/nsp2208H208YCatTat66B.1.3780.041096
ORF1ab/nsp2208H208YCatTat66B.1.438.10.000644
ORF1ab/nsp2208H208YCatTat66B.1.466.20.002347
ORF1ab/nsp2208H208HcaTcaC66C.370.000696
ORF1ab/nsp2208H208YCatTat55A.10.001409
ORF1ab/nsp2208H208YCatTat55A.2.5.20.007862
ORF1ab/nsp2208H208YCatTat55AY.360.000741
ORF1ab/nsp2208H208RcAtcGt55AY.40.000008
ORF1ab/nsp2208H208YCatTat55AY.420.000201
ORF1ab/nsp2208H208YCatTat55AY.470.000156
ORF1ab/nsp2208H208YCatTat55AY.790.006053
ORF1ab/nsp2208H208YCatTat55B.1.1.2940.006329
ORF1ab/nsp2208H208YCatTat55B.1.1.3170.002058
ORF1ab/nsp2208H208delCAT---55B.1.1.330.002104
ORF1ab/nsp2208H208YCatTat55B.1.3200.006227
ORF1ab/nsp2208H208YCatTat55B.6.60.004444
ORF1ab/nsp2208H208YCatTat55P.1.160.001871
ORF1ab/nsp2208H208FCATTTC240.111111
ORF1ab/nsp2208H208FCAtTTt240.111111
ORF1ab/nsp2208H208del2CAt--t44All0.000001
ORF1ab/nsp2208H208YCatTat44AY.1060.00134
ORF1ab/nsp2208H208YCatTat44AY.130.000644
ORF1ab/nsp2208H208YCatTat44AY.3.10.000341
ORF1ab/nsp2208H208delCAT---44AY.4.50.00043
ORF1ab/nsp2208H208YCatTat44B.1.1.370.000771
ORF1ab/nsp2208H208NCatAat44B.1.1.70.000004
ORF1ab/nsp2208H208RcAtcGt44B.1.1770.000053
ORF1ab/nsp2208H208YCatTat44B.1.2340.000528
ORF1ab/nsp2208H208YCatTat44B.1.3890.004008
ORF1ab/nsp2208H208YCatTat44B.1.3960.002823
ORF1ab/nsp2208H208YCatTat44B.1.4110.014815
ORF1ab/nsp2208H208YCatTat44B.1.5960.000349
ORF1ab/nsp2208H208HcaTcaC44P.10.000063
ORF1ab/nsp2208H208YCatTat33A0.001161
ORF1ab/nsp2208H208YCatTat33A.2.50.001497
ORF1ab/nsp2208H208YCatTat33AU.10.003797
ORF1ab/nsp2208H208YCatTat33AY.1000.000138
ORF1ab/nsp2208H208YCatTat33AY.1130.000427
ORF1ab/nsp2208H208YCatTat33AY.1160.00086
ORF1ab/nsp2208H208YCatTat33AY.16.10.00141
ORF1ab/nsp2208H208YCatTat33AY.4.2.10.000447
ORF1ab/nsp2208H208HcaTcaC33AY.470.000093
ORF1ab/nsp2208H208YCatTat33AY.550.002752
ORF1ab/nsp2208H208YCatTat33B0.000383
ORF1ab/nsp2208H208YCatTat33B.1.1.2190.015
ORF1ab/nsp2208H208YCatTat33B.1.1.3180.000905
ORF1ab/nsp2208H208HcaTcaC33B.1.1.3180.000905
ORF1ab/nsp2208H208delCAT---33B.1.1.3480.002389
ORF1ab/nsp2208H208YCatTat33B.1.1390.002199
ORF1ab/nsp2208H208LcAtcTt33B.1.1600.000094
ORF1ab/nsp2208H208YCatTat33B.1.160.300.008929
ORF1ab/nsp2208H208YCatTat33B.1.177.860.00055
ORF1ab/nsp2208H208YCatTat33B.1.1880.05
ORF1ab/nsp2208H208YCatTat33B.1.2100.006397
ORF1ab/nsp2208H208YCatTat33B.1.2400.000647
ORF1ab/nsp2208H208YCatTat33B.1.258.170.000312
ORF1ab/nsp2208H208YCatTat33B.1.3990.005803
ORF1ab/nsp2208H208YCatTat33B.1.4700.004213
ORF1ab/nsp2208H208YCatTat33B.1.5950.000783
ORF1ab/nsp2208H208YCatTat33B.1.617.10.000387
ORF1ab/nsp2208H208YCatTat33B.1.6200.002838
ORF1ab/nsp2208H208YCatTat33C.370.000348
ORF1ab/nsp2208H208YCatTat33D.20.000225
ORF1ab/nsp2208H208YCatTat33P.1.170.000485
ORF1ab/nsp2208H208QcaTcaG220.111111
ORF1ab/nsp2208H208XCaTTaG220.111111
ORF1ab/nsp2208H208HcaTcaC220.111111
ORF1ab/nsp2208H208XCaTTaG22All0
ORF1ab/nsp2208H208DCatGat22All0
ORF1ab/nsp2208H208YCatTat22AY.10.000791
ORF1ab/nsp2208H208YCatTat22AY.1040.003968
ORF1ab/nsp2208H208YCatTat22AY.1080.002205
ORF1ab/nsp2208H208delCAT---22AY.1200.000074
ORF1ab/nsp2208H208YCatTat22AY.120.10.000642
ORF1ab/nsp2208H208HcaTcaC22AY.330.000134
ORF1ab/nsp2208H208YCatTat22AY.340.000194
ORF1ab/nsp2208H208YCatTat22AY.370.000632
ORF1ab/nsp2208H208LcAtcTt22AY.4.20.000043
ORF1ab/nsp2208H208NCatAat22AY.440.000012
ORF1ab/nsp2208H208RcATcGC12AY.440.000006
ORF1ab/nsp2208H208RcAtcGt12AY.440.000006
ORF1ab/nsp2208H208YCatTat22AY.460.000208
ORF1ab/nsp2208H208YCatTat22AY.46.60.000144
ORF1ab/nsp2208H208YCatTat22AY.580.001815
ORF1ab/nsp2208H208YCatTat22AY.60.000082
ORF1ab/nsp2208H208YCatTat22AY.780.003082
ORF1ab/nsp2208H208YCatTat22AY.90.000135
ORF1ab/nsp2208H208HcaTcaC22AY.9.20.000073
ORF1ab/nsp2208H208YCatTat22AY.9.20.000073
ORF1ab/nsp2208H208YCatTat22AY.900.001369
ORF1ab/nsp2208H208NCatAat22B.10.000018
ORF1ab/nsp2208H208delCAT---22B.10.000018
ORF1ab/nsp2208H208HcaTcaC22B.10.000018
ORF1ab/nsp2208H208del1Cat-at12B.10.000009
ORF1ab/nsp2208H208del1cAtc-t12B.10.000009
ORF1ab/nsp2208H208YCatTat22B.1.1.2140.000111
ORF1ab/nsp2208H208YCatTat22B.1.1.2160.001781
ORF1ab/nsp2208H208YCatTat22B.1.1.2630.003115
ORF1ab/nsp2208H208YCatTat22B.1.1.2790.002242
ORF1ab/nsp2208H208YCatTat22B.1.1.3260.003521
ORF1ab/nsp2208H208YCatTat22B.1.1.5280.009615
ORF1ab/nsp2208H208del2CAt--t22B.1.1.70.000002
ORF1ab/nsp2208H208HcaTcaC22B.1.1600.000062
ORF1ab/nsp2208H208LcAtcTt12B.1.1770.000013
ORF1ab/nsp2208H208LcATcTA12B.1.1770.000013
ORF1ab/nsp2208H208YCatTat22B.1.177.460.001837
ORF1ab/nsp2208H208YCatTat22B.1.177.520.003515
ORF1ab/nsp2208H208YCatTat22B.1.177.570.000562
ORF1ab/nsp2208H208YCatTat22B.1.177.770.001452
ORF1ab/nsp2208H208YCatTat22B.1.177.830.002963
ORF1ab/nsp2208H208YCatTat22B.1.1990.008264
ORF1ab/nsp2208H208HcaTcaC22B.1.20.000018
ORF1ab/nsp2208H208RcAtcGt22B.1.2430.000139
ORF1ab/nsp2208H208HcaTcaC22B.1.258.110.000793
ORF1ab/nsp2208H208YCatTat22B.1.3490.00143
ORF1ab/nsp2208H208YCatTat22B.1.36.80.002
ORF1ab/nsp2208H208delCAT---22B.1.4290.000047
ORF1ab/nsp2208H208YCatTat22B.1.4330.00639
ORF1ab/nsp2208H208YCatTat22B.1.5170.000854
ORF1ab/nsp2208H208YCatTat22B.1.6180.008065
ORF1ab/nsp2208H208YCatTat22C.260.014706
ORF1ab/nsp2208H208HcaTcaC22D.20.00015
ORF1ab/nsp2208H208delCAT---22N.60.014184
ORF1ab/nsp2208H208YCatTat22P.1.130.001797
ORF1ab/nsp2208H208RcAtcGt22P.1.140.000096
ORF1ab/nsp2208H208YCatTat22P.1.70.000639
ORF1ab/nsp2208H208delCAT---22P.20.000373
ORF1ab/nsp2208H208YCatTat22P.60.006289
ORF1ab/nsp2208H208TCATACG11All0
ORF1ab/nsp2208H208SCATTCA11All0
ORF1ab/nsp2208H208HcaTcaC11AY.1020.000027
ORF1ab/nsp2208H208HcaTcaC11AY.1030.000006
ORF1ab/nsp2208H208YCatTat11AY.1090.00074
ORF1ab/nsp2208H208YCatTat11AY.1110.000183
ORF1ab/nsp2208H208YCatTat11AY.1170.000085
ORF1ab/nsp2208H208HcaTcaC11AY.1200.000037
ORF1ab/nsp2208H208YCatTat11AY.120.2.10.000498
ORF1ab/nsp2208H208QcaTcaA11AY.170.008197
ORF1ab/nsp2208H208YCatTat11AY.190.00114
ORF1ab/nsp2208H208YCatTat11AY.20.000356
ORF1ab/nsp2208H208YCatTat11AY.220.002092
ORF1ab/nsp2208H208YCatTat11AY.230.00007
ORF1ab/nsp2208H208HcaTcaC11AY.230.00007
ORF1ab/nsp2208H208YCatTat11AY.240.000431
ORF1ab/nsp2208H208NCatAat11AY.250.000006
ORF1ab/nsp2208H208LcAtcTt11AY.250.000006
ORF1ab/nsp2208H208HcaTcaC11AY.260.000028
ORF1ab/nsp2208H208YCatTat11AY.29.10.000221
ORF1ab/nsp2208H208DCatGat11AY.30.00001
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ORF1ab/nsp2208H208SCATTCA11B.1.36.290.000517
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ORF1ab/nsp2208H208YCatTat11C.350.000774
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ORF1ab/nsp2208H208QcaTcaG11P.10.000016
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ORF1ab/nsp2208H208HcaTcaC11P.1.170.000162
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ORF1ab/nsp2208H208delCAT---11Q.80.000165
ORF1ab/nsp2208H208delCAT---11U.30.003861