CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 207 | Y207Y | Y387Y | syn | taC | taT | 8459 | 8459 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207del | Y387del | del | TAC | --- | 77 | 77 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207H | Y387H | nonsyn | Tac | Cac | 76 | 76 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207F | Y387F | nonsyn | tAc | tTc | 33 | 33 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207X | Y387X | nonsyn | taC | taG | 14 | 11 | 0.785714 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207X | Y387X | nonsyn | taC | taA | 14 | 3 | 0.214286 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207C | Y387C | nonsyn | tAc | tGc | 12 | 12 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207N | Y387N | nonsyn | Tac | Aac | 9 | 9 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207del1 | Y387del1 | del | Tac | -ac | 3 | 3 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207D | Y387D | nonsyn | Tac | Gac | 3 | 3 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207K | Y387K | nonsyn | TaC | AaG | 3 | 2 | 0.666667 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207K | Y387K | nonsyn | TaC | AaA | 3 | 1 | 0.333333 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207del2 | Y387del2 | del | tAC | t-- | 1 | 1 | 1 | 1424-1426 |
ORF1ab/nsp2 | 207 | Y207Q | Y387Q | nonsyn | TaC | CaA | 1 | 1 | 1 | 1424-1426 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 8459 | 8459 | All | 0.001618 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2482 | 2482 | AY.43 | 0.010996 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1063 | 1063 | AY.4 | 0.001654 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 794 | 794 | B.1.1.7 | 0.000711 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 670 | 670 | AY.25 | 0.00403 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 290 | 290 | AY.3 | 0.002884 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 240 | 240 | AY.103 | 0.00149 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 228 | 228 | B.1.351 | 0.006778 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 207 | 207 | B.1.617.2 | 0.000779 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 183 | 183 | B.1.2 | 0.001611 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 153 | 153 | B.1.1.277 | 0.116085 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 144 | 144 | AY.102 | 0.003818 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 123 | 123 | AY.46.4 | 0.020234 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 117 | 117 | AY.42 | 0.004707 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 108 | 108 | P.1.7 | 0.034483 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 87 | 87 | B.1.1.519 | 0.003455 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 83 | 83 | B.1 | 0.00076 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 77 | 77 | All | 0.000015 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 76 | 76 | All | 0.000015 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 68 | 68 | P.1 | 0.001071 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 64 | 64 | B.1.400.1 | 0.969697 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 61 | 61 | AY.39.1 | 0.002416 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 56 | 56 | AY.44 | 0.000341 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 51 | 51 | B.1.177 | 0.000672 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 45 | 45 | AY.118 | 0.002819 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 41 | 41 | B.1.1 | 0.000744 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 38 | 38 | B.1.221 | 0.002699 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 36 | 36 | AZ.2 | 0.029557 |
ORF1ab/nsp2 | 207 | Y207F | tAc | tTc | 33 | 33 | All | 0.000006 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 33 | 33 | B.1.1.397 | 0.074324 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 32 | 32 | AY.9 | 0.002163 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 31 | 31 | AY.39 | 0.000766 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 30 | 30 | B.1.526 | 0.000705 |
ORF1ab/nsp2 | 207 | Y207F | tAc | tTc | 29 | 29 | B.1.177.60 | 0.006335 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 28 | 28 | AY.120 | 0.001041 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 27 | 27 | AY.4.1 | 0.019912 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 24 | 24 | B.1.621 | 0.002124 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 19 | 19 | B.1.258.17 | 0.001975 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 18 | 18 | AY.5 | 0.000372 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 18 | 18 | B.1.617.1 | 0.002321 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 17 | 17 | B.1.177.86 | 0.003119 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 16 | 16 | AY.26 | 0.000453 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 16 | 16 | AY.4.2 | 0.000347 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 16 | 16 | B.1.1.58 | 0.086022 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 16 | 16 | C.37 | 0.001857 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 15 | 15 | B.1.429 | 0.000353 |
ORF1ab/nsp2 | 207 | Y207X | taC | taG | 11 | 14 | All | 0.000002 |
ORF1ab/nsp2 | 207 | Y207X | taC | taA | 3 | 14 | All | 0.000001 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 14 | 14 | AY.119 | 0.000494 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 14 | 14 | AY.98.1 | 0.000678 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 14 | 14 | B.40 | 0.0051 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 13 | 13 | B.1.427 | 0.000656 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 12 | 12 | All | 0.000002 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 12 | 12 | AY.70 | 0.002502 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 12 | 12 | B.1.1.222 | 0.002448 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 12 | 12 | B.1.232 | 0.006448 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 11 | 11 | AY.113 | 0.001566 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 11 | 11 | B.1.349 | 0.007863 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 10 | 10 | B.1.177.21 | 0.000765 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 10 | 10 | B.1.36.29 | 0.005173 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 10 | 10 | Q.1 | 0.001263 |
ORF1ab/nsp2 | 207 | Y207N | Tac | Aac | 9 | 9 | All | 0.000002 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 9 | 9 | B.1.311 | 0.002471 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 8 | 8 | AY.114 | 0.001849 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 8 | 8 | AY.78 | 0.012327 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 8 | 8 | AY.92 | 0.002298 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 8 | 8 | B.1.1.28 | 0.00249 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 8 | 8 | B.1.497 | 0.002518 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 7 | 7 | B.1.524 | 0.009845 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 7 | 7 | P.1.4 | 0.006836 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp2 | 207 | Y207X | taC | taG | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 6 | 6 | B.1.585 | 0.166667 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | B.1.1.418 | 0.113636 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | B.1.468 | 0.028571 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | B.1.623 | 0.002682 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.39.2 | 0.006163 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.73 | 0.002661 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp2 | 207 | Y207N | Tac | Aac | 4 | 4 | AY.8 | 0.002424 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | B.1.1.524 | 0.083333 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | B.1.104 | 0.01476 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | B.1.470 | 0.005618 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 4 | 4 | N.5 | 0.007067 |
ORF1ab/nsp2 | 207 | Y207D | Tac | Gac | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 207 | Y207del1 | Tac | -ac | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 207 | Y207K | TaC | AaG | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 207 | Y207K | TaC | AaA | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | AY.79 | 0.003632 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | B.1.177.52 | 0.005272 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | B.1.236 | 0.00616 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp2 | 207 | Y207N | Tac | Aac | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 207 | Y207X | taC | taG | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 207 | Y207K | TaC | AaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | A.23 | 0.021053 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 207 | Y207D | Tac | Gac | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.1.217 | 0.007273 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.1.305 | 0.007722 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.160.28 | 0.005848 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 2 | 2 | B.1.177.30 | 0.005025 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.544 | 0.012048 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 207 | Y207X | taC | taG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 207 | Y207Q | TaC | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 207 | Y207del2 | tAC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 207 | Y207X | taC | taA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 207 | Y207Q | TaC | CaA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 207 | Y207N | Tac | Aac | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 207 | Y207X | taC | taG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 207 | Y207F | tAc | tTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 207 | Y207N | Tac | Aac | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.285 | 0.006536 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 207 | Y207F | tAc | tTc | 1 | 1 | B.1.1.379 | 0.03125 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.379 | 0.03125 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 207 | Y207del1 | Tac | -ac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 207 | Y207D | Tac | Gac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 207 | Y207N | Tac | Aac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 207 | Y207del2 | tAC | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 207 | Y207X | taC | taA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 207 | Y207del1 | Tac | -ac | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp2 | 207 | Y207F | tAc | tTc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 207 | Y207K | TaC | AaA | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.250 | 0.014493 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp2 | 207 | Y207X | taC | taA | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.485 | 0.014925 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp2 | 207 | Y207del1 | Tac | -ac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 207 | Y207F | tAc | tTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 207 | Y207C | tAc | tGc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | L.3 | 0.003546 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 207 | Y207H | Tac | Cac | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 207 | Y207Y | taC | taT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 207 | Y207del | TAC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|