CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 200 | P200L | P380L | nonsyn | cCt | cTt | 17000 | 16978 | 0.998706 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200L | P380L | nonsyn | cCT | cTC | 17000 | 21 | 0.00123529 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200L | P380L | nonsyn | cCT | cTG | 17000 | 1 | 0.0000588235 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200S | P380S | nonsyn | Cct | Tct | 2420 | 2418 | 0.999174 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200S | P380S | nonsyn | CcT | TcG | 2420 | 1 | 0.000413223 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200S | P380S | nonsyn | CcT | TcC | 2420 | 1 | 0.000413223 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200P | P380P | syn | ccT | ccC | 2183 | 2040 | 0.934494 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200P | P380P | syn | ccT | ccA | 2183 | 89 | 0.0407696 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200P | P380P | syn | ccT | ccG | 2183 | 54 | 0.0247366 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200H | P380H | nonsyn | cCt | cAt | 242 | 242 | 1 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200T | P380T | nonsyn | Cct | Act | 119 | 119 | 1 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200del | P380del | del | CCT | --- | 71 | 71 | 1 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200R | P380R | nonsyn | cCt | cGt | 10 | 10 | 1 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200del1 | P380del1 | del | Cct | -ct | 4 | 2 | 0.5 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200del1 | P380del1 | del | ccT | cc- | 4 | 2 | 0.5 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200I | P380I | nonsyn | CCt | ATt | 1 | 1 | 1 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200del2 | P380del2 | del | CCt | --t | 1 | 1 | 1 | 1403-1405 |
ORF1ab/nsp2 | 200 | P200F | P380F | nonsyn | CCt | TTt | 1 | 1 | 1 | 1403-1405 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 16978 | 17000 | All | 0.003247 |
ORF1ab/nsp2 | 200 | P200L | cCT | cTC | 21 | 17000 | All | 0.000004 |
ORF1ab/nsp2 | 200 | P200L | cCT | cTG | 1 | 17000 | All | 0 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 11940 | 11961 | AY.23 | 0.83281 |
ORF1ab/nsp2 | 200 | P200L | cCT | cTC | 21 | 11961 | AY.23 | 0.001465 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2418 | 2420 | All | 0.000462 |
ORF1ab/nsp2 | 200 | P200S | CcT | TcG | 1 | 2420 | All | 0 |
ORF1ab/nsp2 | 200 | P200S | CcT | TcC | 1 | 2420 | All | 0 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2391 | 2391 | AY.23.1 | 0.997913 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 2040 | 2183 | All | 0.00039 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 89 | 2183 | All | 0.000017 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 54 | 2183 | All | 0.00001 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1681 | 1697 | AY.4 | 0.002616 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 16 | 1697 | AY.4 | 0.000025 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1517 | 1517 | AY.57 | 0.995407 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 722 | 722 | B.1.351 | 0.021463 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 578 | 578 | AY.4 | 0.0009 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 273 | 273 | AY.116 | 0.078291 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 245 | 245 | B.1.1.7 | 0.000219 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 242 | 242 | All | 0.000046 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 225 | 225 | AY.25 | 0.001353 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 201 | 201 | B.1.1.7 | 0.00018 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 150 | 150 | AY.4.2 | 0.003253 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 119 | 119 | All | 0.000023 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 84 | 84 | AY.44 | 0.000511 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 81 | 81 | AY.120 | 0.003011 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 46 | 76 | B.1.1.7 | 0.000041 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 28 | 76 | B.1.1.7 | 0.000025 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 2 | 76 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 71 | 71 | All | 0.000014 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 61 | 61 | P.1 | 0.000961 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 47 | 50 | B.1.617.2 | 0.000177 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 2 | 50 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 50 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 48 | 49 | B.1.2 | 0.000423 |
ORF1ab/nsp2 | 200 | P200L | cCT | cTG | 1 | 49 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 43 | 43 | B.1.177.15 | 0.027129 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 38 | 38 | AY.43 | 0.000168 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 37 | 37 | B.1.617.2 | 0.000139 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 21 | 36 | AY.43 | 0.000093 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 15 | 36 | AY.43 | 0.000066 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 33 | 33 | AY.43 | 0.000146 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 33 | 33 | B.1.2 | 0.000291 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 31 | 31 | P.1.4 | 0.030273 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 30 | 30 | AY.4 | 0.000047 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 29 | 29 | AY.25 | 0.000174 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 28 | 28 | AY.99.2 | 0.00258 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 28 | 28 | B.1.1.7 | 0.000025 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 27 | 27 | B.1.429 | 0.000635 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 25 | 25 | B.1.359 | 0.568182 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 23 | 23 | B.1 | 0.000211 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 22 | 22 | AY.24 | 0.009483 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 22 | 22 | B.1.575 | 0.006675 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 15 | 16 | AY.103 | 0.000093 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 16 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 16 | 16 | B.1.177.18 | 0.018561 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 15 | 15 | AY.37 | 0.004741 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 14 | 14 | P.1.1 | 0.004447 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 13 | 13 | AY.6 | 0.000535 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 13 | 13 | B.1.36 | 0.001897 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 10 | 12 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 200 | P200S | CcT | TcC | 1 | 12 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 200 | P200S | CcT | TcG | 1 | 12 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 12 | 12 | B.1.1.28 | 0.003735 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 12 | 12 | B.1.160 | 0.000374 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 7 | 11 | AY.3 | 0.00007 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 3 | 11 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 11 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 10 | 11 | AY.9.2 | 0.000367 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 11 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 200 | P200R | cCt | cGt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 9 | 9 | B.1.1.231 | 0.027864 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 9 | 9 | B.1.177.4 | 0.0019 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 6 | 9 | B.1.429 | 0.000141 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 3 | 9 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 7 | 7 | A.1 | 0.001973 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 4 | 5 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 5 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | AY.59 | 0.002648 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 5 | 5 | AY.60 | 0.00469 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 200 | P200R | cCt | cGt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 5 | 5 | B.1.160.30 | 0.014881 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | B.1.466.2 | 0.001956 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | C.1 | 0.011962 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp2 | 200 | P200del1 | Cct | -ct | 2 | 4 | All | 0 |
ORF1ab/nsp2 | 200 | P200del1 | ccT | cc- | 2 | 4 | All | 0 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 4 | 4 | B.1.126 | 0.005102 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 4 | 4 | B.1.210 | 0.008529 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 4 | 4 | B.1.471 | 0.010929 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 3 | B | 0.000128 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 3 | B | 0.000128 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 3 | B | 0.000128 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | B.1.1.384 | 0.071429 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | B.1.177.46 | 0.002755 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 2 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 2 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.76 | 0.009662 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 2 | 2 | B.1.1.300 | 0.021505 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 2 | 2 | B.1.1.518 | 0.012658 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 200 | P200del1 | ccT | cc- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 200 | P200del1 | Cct | -ct | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.503 | 0.004975 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 2 | 2 | C.14 | 0.008658 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | N.9 | 0.011905 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp2 | 200 | P200del2 | CCt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 200 | P200I | CCt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 200 | P200F | CCt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 200 | P200F | CCt | TTt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 200 | P200R | cCt | cGt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 200 | P200I | CCt | ATt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 200 | P200R | cCt | cGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 200 | P200R | cCt | cGt | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.160.17 | 0.001701 |
ORF1ab/nsp2 | 200 | P200del2 | CCt | --t | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.44 | 0.008333 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp2 | 200 | P200R | cCt | cGt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.594 | 0.03125 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 200 | P200R | cCt | cGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.42 | 0.033333 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 200 | P200P | ccT | ccG | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 200 | P200T | Cct | Act | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 200 | P200H | cCt | cAt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 200 | P200L | cCt | cTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 200 | P200S | Cct | Tct | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 200 | P200del | CCT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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