CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 200

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2200P200LP380LnonsyncCtcTt17000169780.9987061403-1405
ORF1ab/nsp2200P200LP380LnonsyncCTcTC17000210.001235291403-1405
ORF1ab/nsp2200P200LP380LnonsyncCTcTG1700010.00005882351403-1405
ORF1ab/nsp2200P200SP380SnonsynCctTct242024180.9991741403-1405
ORF1ab/nsp2200P200SP380SnonsynCcTTcG242010.0004132231403-1405
ORF1ab/nsp2200P200SP380SnonsynCcTTcC242010.0004132231403-1405
ORF1ab/nsp2200P200PP380PsynccTccC218320400.9344941403-1405
ORF1ab/nsp2200P200PP380PsynccTccA2183890.04076961403-1405
ORF1ab/nsp2200P200PP380PsynccTccG2183540.02473661403-1405
ORF1ab/nsp2200P200HP380HnonsyncCtcAt24224211403-1405
ORF1ab/nsp2200P200TP380TnonsynCctAct11911911403-1405
ORF1ab/nsp2200P200delP380deldelCCT---717111403-1405
ORF1ab/nsp2200P200RP380RnonsyncCtcGt101011403-1405
ORF1ab/nsp2200P200del1P380del1delCct-ct420.51403-1405
ORF1ab/nsp2200P200del1P380del1delccTcc-420.51403-1405
ORF1ab/nsp2200P200IP380InonsynCCtATt1111403-1405
ORF1ab/nsp2200P200del2P380del2delCCt--t1111403-1405
ORF1ab/nsp2200P200FP380FnonsynCCtTTt1111403-1405

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2200P200LcCtcTt1697817000All0.003247
ORF1ab/nsp2200P200LcCTcTC2117000All0.000004
ORF1ab/nsp2200P200LcCTcTG117000All0
ORF1ab/nsp2200P200LcCtcTt1194011961AY.230.83281
ORF1ab/nsp2200P200LcCTcTC2111961AY.230.001465
ORF1ab/nsp2200P200SCctTct24182420All0.000462
ORF1ab/nsp2200P200SCcTTcG12420All0
ORF1ab/nsp2200P200SCcTTcC12420All0
ORF1ab/nsp2200P200LcCtcTt23912391AY.23.10.997913
ORF1ab/nsp2200P200PccTccC20402183All0.00039
ORF1ab/nsp2200P200PccTccA892183All0.000017
ORF1ab/nsp2200P200PccTccG542183All0.00001
ORF1ab/nsp2200P200PccTccC16811697AY.40.002616
ORF1ab/nsp2200P200PccTccA161697AY.40.000025
ORF1ab/nsp2200P200SCctTct15171517AY.570.995407
ORF1ab/nsp2200P200LcCtcTt722722B.1.3510.021463
ORF1ab/nsp2200P200LcCtcTt578578AY.40.0009
ORF1ab/nsp2200P200LcCtcTt273273AY.1160.078291
ORF1ab/nsp2200P200SCctTct245245B.1.1.70.000219
ORF1ab/nsp2200P200HcCtcAt242242All0.000046
ORF1ab/nsp2200P200SCctTct225225AY.250.001353
ORF1ab/nsp2200P200LcCtcTt201201B.1.1.70.00018
ORF1ab/nsp2200P200PccTccC150150AY.4.20.003253
ORF1ab/nsp2200P200TCctAct119119All0.000023
ORF1ab/nsp2200P200LcCtcTt8484AY.440.000511
ORF1ab/nsp2200P200LcCtcTt8181AY.1200.003011
ORF1ab/nsp2200P200PccTccA4676B.1.1.70.000041
ORF1ab/nsp2200P200PccTccC2876B.1.1.70.000025
ORF1ab/nsp2200P200PccTccG276B.1.1.70.000002
ORF1ab/nsp2200P200delCCT---7171All0.000014
ORF1ab/nsp2200P200LcCtcTt6161P.10.000961
ORF1ab/nsp2200P200PccTccC4750B.1.617.20.000177
ORF1ab/nsp2200P200PccTccG250B.1.617.20.000008
ORF1ab/nsp2200P200PccTccA150B.1.617.20.000004
ORF1ab/nsp2200P200LcCtcTt4849B.1.20.000423
ORF1ab/nsp2200P200LcCTcTG149B.1.20.000009
ORF1ab/nsp2200P200LcCtcTt4343B.1.177.150.027129
ORF1ab/nsp2200P200HcCtcAt3838AY.430.000168
ORF1ab/nsp2200P200LcCtcTt3737B.1.617.20.000139
ORF1ab/nsp2200P200PccTccG2136AY.430.000093
ORF1ab/nsp2200P200PccTccC1536AY.430.000066
ORF1ab/nsp2200P200LcCtcTt3333AY.430.000146
ORF1ab/nsp2200P200SCctTct3333B.1.20.000291
ORF1ab/nsp2200P200LcCtcTt3131P.1.40.030273
ORF1ab/nsp2200P200SCctTct3030AY.40.000047
ORF1ab/nsp2200P200LcCtcTt2929AY.250.000174
ORF1ab/nsp2200P200SCctTct2929B.1.1770.000382
ORF1ab/nsp2200P200TCctAct2828AY.99.20.00258
ORF1ab/nsp2200P200HcCtcAt2828B.1.1.70.000025
ORF1ab/nsp2200P200LcCtcTt2727B.1.4290.000635
ORF1ab/nsp2200P200SCctTct2727B.1.617.20.000102
ORF1ab/nsp2200P200SCctTct2525B.1.3590.568182
ORF1ab/nsp2200P200LcCtcTt2323B.10.000211
ORF1ab/nsp2200P200HcCtcAt2323B.1.20.000203
ORF1ab/nsp2200P200LcCtcTt2222AY.240.009483
ORF1ab/nsp2200P200PccTccC2222B.1.5750.006675
ORF1ab/nsp2200P200LcCtcTt2121AY.1030.00013
ORF1ab/nsp2200P200HcCtcAt2020AY.40.000031
ORF1ab/nsp2200P200PccTccC1516AY.1030.000093
ORF1ab/nsp2200P200PccTccA116AY.1030.000006
ORF1ab/nsp2200P200TCctAct1616AY.610.001676
ORF1ab/nsp2200P200delCCT---1616B.1.1.70.000014
ORF1ab/nsp2200P200SCctTct1616B.1.177.180.018561
ORF1ab/nsp2200P200SCctTct1515AY.1030.000093
ORF1ab/nsp2200P200HcCtcAt1515AY.250.00009
ORF1ab/nsp2200P200LcCtcTt1515AY.370.004741
ORF1ab/nsp2200P200HcCtcAt1515B.1.617.20.000056
ORF1ab/nsp2200P200SCctTct1414P.1.10.004447
ORF1ab/nsp2200P200SCctTct1313AY.60.000535
ORF1ab/nsp2200P200TCctAct1313B.1.1.70.000012
ORF1ab/nsp2200P200LcCtcTt1313B.1.360.001897
ORF1ab/nsp2200P200SCctTct1313B.1.4290.000306
ORF1ab/nsp2200P200SCctTct1012AY.440.000061
ORF1ab/nsp2200P200SCcTTcC112AY.440.000006
ORF1ab/nsp2200P200SCcTTcG112AY.440.000006
ORF1ab/nsp2200P200SCctTct1212B.1.1.280.003735
ORF1ab/nsp2200P200LcCtcTt1212B.1.1600.000374
ORF1ab/nsp2200P200LcCtcTt1212B.1.5260.000282
ORF1ab/nsp2200P200PccTccA711AY.30.00007
ORF1ab/nsp2200P200PccTccC311AY.30.00003
ORF1ab/nsp2200P200PccTccG111AY.30.00001
ORF1ab/nsp2200P200PccTccG1011AY.9.20.000367
ORF1ab/nsp2200P200PccTccC111AY.9.20.000037
ORF1ab/nsp2200P200SCctTct1111B.10.000101
ORF1ab/nsp2200P200RcCtcGt1010All0.000002
ORF1ab/nsp2200P200LcCtcTt1010AY.420.000402
ORF1ab/nsp2200P200LcCtcTt99AY.200.00035
ORF1ab/nsp2200P200LcCtcTt99B.1.1.10.00294
ORF1ab/nsp2200P200LcCtcTt99B.1.1.2310.027864
ORF1ab/nsp2200P200LcCtcTt99B.1.1.5190.000357
ORF1ab/nsp2200P200SCctTct99B.1.177.40.0019
ORF1ab/nsp2200P200PccTccC69B.1.4290.000141
ORF1ab/nsp2200P200PccTccG39B.1.4290.000071
ORF1ab/nsp2200P200PccTccC99B.1.5260.000212
ORF1ab/nsp2200P200LcCtcTt88AY.1170.000676
ORF1ab/nsp2200P200LcCtcTt88AY.330.000534
ORF1ab/nsp2200P200delCCT---88AY.40.000012
ORF1ab/nsp2200P200LcCtcTt88AY.98.10.000387
ORF1ab/nsp2200P200HcCtcAt88B.1.10.000145
ORF1ab/nsp2200P200SCctTct77A.10.001973
ORF1ab/nsp2200P200LcCtcTt77AY.1020.000186
ORF1ab/nsp2200P200PccTccC77AY.440.000043
ORF1ab/nsp2200P200SCctTct77AY.750.000392
ORF1ab/nsp2200P200LcCtcTt77B.1.10.000127
ORF1ab/nsp2200P200TCctAct77B.1.1.2160.006233
ORF1ab/nsp2200P200TCctAct77B.1.617.20.000026
ORF1ab/nsp2200P200PccTccC77B.1.6210.00062
ORF1ab/nsp2200P200LcCtcTt66AY.1190.000212
ORF1ab/nsp2200P200LcCtcTt66AY.460.000624
ORF1ab/nsp2200P200PccTccC66B.10.000055
ORF1ab/nsp2200P200SCctTct66B.1.258.170.000624
ORF1ab/nsp2200P200PccTccA45AY.1020.000106
ORF1ab/nsp2200P200PccTccG15AY.1020.000027
ORF1ab/nsp2200P200SCctTct55AY.260.000142
ORF1ab/nsp2200P200SCctTct55AY.430.000022
ORF1ab/nsp2200P200LcCtcTt55AY.590.002648
ORF1ab/nsp2200P200SCctTct55AY.600.00469
ORF1ab/nsp2200P200HcCtcAt55B.10.000046
ORF1ab/nsp2200P200delCCT---55B.1.1.330.002104
ORF1ab/nsp2200P200SCctTct55B.1.1.5190.000199
ORF1ab/nsp2200P200RcCtcGt55B.1.1.70.000004
ORF1ab/nsp2200P200HcCtcAt55B.1.160.300.014881
ORF1ab/nsp2200P200LcCtcTt55B.1.1770.000066
ORF1ab/nsp2200P200LcCtcTt55B.1.2210.000355
ORF1ab/nsp2200P200SCctTct55B.1.3510.000149
ORF1ab/nsp2200P200LcCtcTt55B.1.466.20.001956
ORF1ab/nsp2200P200LcCtcTt55B.1.5750.001517
ORF1ab/nsp2200P200LcCtcTt55B.1.6210.000443
ORF1ab/nsp2200P200LcCtcTt55C.10.011962
ORF1ab/nsp2200P200LcCtcTt55C.370.00058
ORF1ab/nsp2200P200SCctTct55P.10.000079
ORF1ab/nsp2200P200del1Cct-ct24All0
ORF1ab/nsp2200P200del1ccTcc-24All0
ORF1ab/nsp2200P200HcCtcAt44AY.1030.000025
ORF1ab/nsp2200P200LcCtcTt44AY.260.000113
ORF1ab/nsp2200P200SCctTct44AY.290.000063
ORF1ab/nsp2200P200TCctAct44AY.30.00004
ORF1ab/nsp2200P200PccTccG44AY.340.000388
ORF1ab/nsp2200P200TCctAct44AY.40.000006
ORF1ab/nsp2200P200delCCT---44AY.4.50.00043
ORF1ab/nsp2200P200HcCtcAt44AY.440.000024
ORF1ab/nsp2200P200LcCtcTt44AY.470.000124
ORF1ab/nsp2200P200SCctTct44AY.50.000083
ORF1ab/nsp2200P200HcCtcAt44B.1.1.10.001307
ORF1ab/nsp2200P200HcCtcAt44B.1.1260.005102
ORF1ab/nsp2200P200delCCT---44B.1.1770.000053
ORF1ab/nsp2200P200SCctTct44B.1.177.210.000306
ORF1ab/nsp2200P200LcCtcTt44B.1.2100.008529
ORF1ab/nsp2200P200LcCtcTt44B.1.4710.010929
ORF1ab/nsp2200P200LcCtcTt44B.1.5960.000349
ORF1ab/nsp2200P200SCctTct44C.370.000464
ORF1ab/nsp2200P200HcCtcAt44D.20.0003
ORF1ab/nsp2200P200LcCtcTt44P.1.140.000191
ORF1ab/nsp2200P200SCctTct33A.2.50.001497
ORF1ab/nsp2200P200LcCtcTt33A.2.50.001497
ORF1ab/nsp2200P200PccTccC33AY.1000.000138
ORF1ab/nsp2200P200LcCtcTt33AY.1180.000188
ORF1ab/nsp2200P200TCctAct33AY.250.000018
ORF1ab/nsp2200P200SCctTct33AY.30.00003
ORF1ab/nsp2200P200PccTccC33AY.390.000074
ORF1ab/nsp2200P200PccTccC33AY.420.000121
ORF1ab/nsp2200P200SCctTct33AY.46.60.000217
ORF1ab/nsp2200P200HcCtcAt33AY.610.000314
ORF1ab/nsp2200P200SCctTct33AY.620.001307
ORF1ab/nsp2200P200SCctTct33AY.75.10.000541
ORF1ab/nsp2200P200LcCtcTt33AY.920.000862
ORF1ab/nsp2200P200PccTccC13B0.000128
ORF1ab/nsp2200P200PccTccG13B0.000128
ORF1ab/nsp2200P200PccTccA13B0.000128
ORF1ab/nsp2200P200TCctAct33B.10.000027
ORF1ab/nsp2200P200SCctTct33B.1.1.2140.000166
ORF1ab/nsp2200P200delCCT---33B.1.1.3480.002389
ORF1ab/nsp2200P200SCctTct33B.1.1.3840.071429
ORF1ab/nsp2200P200LcCtcTt33B.1.1.4340.001046
ORF1ab/nsp2200P200SCctTct33B.1.1.630.001157
ORF1ab/nsp2200P200LcCtcTt33B.1.1.700.001023
ORF1ab/nsp2200P200LcCtcTt33B.1.177.460.002755
ORF1ab/nsp2200P200LcCtcTt33B.1.2340.000396
ORF1ab/nsp2200P200PccTccA33B.1.2430.000209
ORF1ab/nsp2200P200LcCtcTt33B.1.4000.001287
ORF1ab/nsp2200P200HcCtcAt33B.1.4290.000071
ORF1ab/nsp2200P200HcCtcAt33B.1.5960.000261
ORF1ab/nsp2200P200LcCtcTt33R.10.00027
ORF1ab/nsp2200P200LcCtcTt22A.20.001324
ORF1ab/nsp2200P200LcCtcTt22AY.1060.00067
ORF1ab/nsp2200P200SCctTct22AY.1180.000125
ORF1ab/nsp2200P200SCctTct22AY.1210.000271
ORF1ab/nsp2200P200TCctAct22AY.16.10.00094
ORF1ab/nsp2200P200PccTccC22AY.250.000012
ORF1ab/nsp2200P200delCCT---22AY.30.00002
ORF1ab/nsp2200P200TCctAct22AY.3.10.000171
ORF1ab/nsp2200P200HcCtcAt22AY.330.000134
ORF1ab/nsp2200P200HcCtcAt22AY.4.20.000043
ORF1ab/nsp2200P200LcCtcTt22AY.4.20.000043
ORF1ab/nsp2200P200LcCtcTt22AY.4.30.001684
ORF1ab/nsp2200P200TCctAct22AY.430.000009
ORF1ab/nsp2200P200LcCtcTt22AY.46.30.001867
ORF1ab/nsp2200P200SCctTct22AY.46.40.000329
ORF1ab/nsp2200P200PccTccC22AY.470.000062
ORF1ab/nsp2200P200LcCtcTt22AY.50.000041
ORF1ab/nsp2200P200PccTccA12AY.50.000021
ORF1ab/nsp2200P200PccTccC12AY.50.000021
ORF1ab/nsp2200P200TCctAct22AY.550.001835
ORF1ab/nsp2200P200LcCtcTt22AY.650.001066
ORF1ab/nsp2200P200PccTccC12AY.690.000187
ORF1ab/nsp2200P200PccTccA12AY.690.000187
ORF1ab/nsp2200P200LcCtcTt22AY.7.10.000225
ORF1ab/nsp2200P200SCctTct22AY.730.001331
ORF1ab/nsp2200P200LcCtcTt22AY.750.000112
ORF1ab/nsp2200P200LcCtcTt22AY.760.009662
ORF1ab/nsp2200P200LcCtcTt22AY.9.20.000073
ORF1ab/nsp2200P200LcCtcTt22AY.99.20.000184
ORF1ab/nsp2200P200LcCtcTt22B0.000256
ORF1ab/nsp2200P200delCCT---22B.10.000018
ORF1ab/nsp2200P200PccTccC22B.1.10.000036
ORF1ab/nsp2200P200SCctTct22B.1.10.000036
ORF1ab/nsp2200P200SCctTct22B.1.1.250.001137
ORF1ab/nsp2200P200LcCtcTt22B.1.1.280.000622
ORF1ab/nsp2200P200SCctTct22B.1.1.2840.000215
ORF1ab/nsp2200P200PccTccG22B.1.1.3000.021505
ORF1ab/nsp2200P200SCctTct22B.1.1.3510.005587
ORF1ab/nsp2200P200PccTccC22B.1.1.3620.011236
ORF1ab/nsp2200P200SCctTct22B.1.1.3970.004505
ORF1ab/nsp2200P200PccTccC22B.1.1.4340.000697
ORF1ab/nsp2200P200PccTccC22B.1.1.5180.012658
ORF1ab/nsp2200P200PccTccA22B.1.1.5190.000079
ORF1ab/nsp2200P200HcCtcAt22B.1.1.5190.000079
ORF1ab/nsp2200P200del1ccTcc-22B.1.1.70.000002
ORF1ab/nsp2200P200SCctTct22B.1.1.700.000682
ORF1ab/nsp2200P200SCctTct22B.1.1600.000062
ORF1ab/nsp2200P200PccTccG22B.1.1770.000026
ORF1ab/nsp2200P200HcCtcAt22B.1.1770.000026
ORF1ab/nsp2200P200HcCtcAt22B.1.177.350.001382
ORF1ab/nsp2200P200LcCtcTt22B.1.177.860.000367
ORF1ab/nsp2200P200TCctAct22B.1.20.000018
ORF1ab/nsp2200P200del1Cct-ct22B.1.20.000018
ORF1ab/nsp2200P200PccTccG12B.1.20.000009
ORF1ab/nsp2200P200PccTccA12B.1.20.000009
ORF1ab/nsp2200P200SCctTct22B.1.2340.000264
ORF1ab/nsp2200P200LcCtcTt22B.1.2430.000139
ORF1ab/nsp2200P200LcCtcTt22B.1.2580.000133
ORF1ab/nsp2200P200TCctAct22B.1.3510.000059
ORF1ab/nsp2200P200SCctTct22B.1.351.20.000605
ORF1ab/nsp2200P200SCctTct22B.1.36.180.00084
ORF1ab/nsp2200P200HcCtcAt22B.1.3620.003082
ORF1ab/nsp2200P200LcCtcTt22B.1.4270.000101
ORF1ab/nsp2200P200LcCtcTt22B.1.438.10.000215
ORF1ab/nsp2200P200SCctTct22B.1.466.20.000782
ORF1ab/nsp2200P200LcCtcTt22B.1.5030.004975
ORF1ab/nsp2200P200LcCtcTt22B.1.5170.000854
ORF1ab/nsp2200P200TCctAct22B.1.5240.002813
ORF1ab/nsp2200P200SCctTct22B.1.5610.000794
ORF1ab/nsp2200P200LcCtcTt22B.1.6370.000146
ORF1ab/nsp2200P200SCctTct22C.10.004785
ORF1ab/nsp2200P200SCctTct22C.140.008658
ORF1ab/nsp2200P200delCCT---22N.60.014184
ORF1ab/nsp2200P200HcCtcAt22N.90.011905
ORF1ab/nsp2200P200TCctAct22P.10.000032
ORF1ab/nsp2200P200HcCtcAt22P.10.000032
ORF1ab/nsp2200P200HcCtcAt22P.1.150.000465
ORF1ab/nsp2200P200delCCT---22P.20.000373
ORF1ab/nsp2200P200LcCtcTt22P.30.00319
ORF1ab/nsp2200P200LcCtcTt22Q.70.002222
ORF1ab/nsp2200P200PccTccA11A0.000387
ORF1ab/nsp2200P200LcCtcTt11A.10.000282
ORF1ab/nsp2200P200HcCtcAt11A.20.000662
ORF1ab/nsp2200P200SCctTct11A.23.10.000704
ORF1ab/nsp2200P200LcCtcTt11A.250.018182
ORF1ab/nsp2200P200LcCtcTt11A.270.001656
ORF1ab/nsp2200P200del2CCt--t11All0
ORF1ab/nsp2200P200ICCtATt11All0
ORF1ab/nsp2200P200FCCtTTt11All0
ORF1ab/nsp2200P200LcCtcTt11AU.20.002421
ORF1ab/nsp2200P200LcCtcTt11AY.100.00053
ORF1ab/nsp2200P200SCctTct11AY.1000.000046
ORF1ab/nsp2200P200HcCtcAt11AY.1000.000046
ORF1ab/nsp2200P200LcCtcTt11AY.1000.000046
ORF1ab/nsp2200P200SCctTct11AY.1100.000113
ORF1ab/nsp2200P200PccTccA11AY.1110.000183
ORF1ab/nsp2200P200PccTccC11AY.1130.000142
ORF1ab/nsp2200P200LcCtcTt11AY.1130.000142
ORF1ab/nsp2200P200HcCtcAt11AY.1130.000142
ORF1ab/nsp2200P200SCctTct11AY.1190.000035
ORF1ab/nsp2200P200PccTccC11AY.1200.000037
ORF1ab/nsp2200P200SCctTct11AY.1200.000037
ORF1ab/nsp2200P200delCCT---11AY.1200.000037
ORF1ab/nsp2200P200SCctTct11AY.130.000161
ORF1ab/nsp2200P200SCctTct11AY.160.00038
ORF1ab/nsp2200P200HcCtcAt11AY.160.00038
ORF1ab/nsp2200P200LcCtcTt11AY.160.00038
ORF1ab/nsp2200P200PccTccC11AY.200.000039
ORF1ab/nsp2200P200FCCtTTt11AY.230.00007
ORF1ab/nsp2200P200SCctTct11AY.240.000431
ORF1ab/nsp2200P200PccTccC11AY.260.000028
ORF1ab/nsp2200P200TCctAct11AY.290.000016
ORF1ab/nsp2200P200PccTccC11AY.290.000016
ORF1ab/nsp2200P200LcCtcTt11AY.30.00001
ORF1ab/nsp2200P200HcCtcAt11AY.30.00001
ORF1ab/nsp2200P200PccTccC11AY.3.10.000085
ORF1ab/nsp2200P200HcCtcAt11AY.3.10.000085
ORF1ab/nsp2200P200LcCtcTt11AY.300.000396
ORF1ab/nsp2200P200PccTccC11AY.320.000532
ORF1ab/nsp2200P200SCctTct11AY.340.000097
ORF1ab/nsp2200P200HcCtcAt11AY.360.000148
ORF1ab/nsp2200P200PccTccG11AY.370.000316
ORF1ab/nsp2200P200SCctTct11AY.370.000316
ORF1ab/nsp2200P200SCctTct11AY.39.10.00004
ORF1ab/nsp2200P200SCctTct11AY.4.20.000022
ORF1ab/nsp2200P200delCCT---11AY.4.20.000022
ORF1ab/nsp2200P200LcCtcTt11AY.4.2.10.000149
ORF1ab/nsp2200P200SCctTct11AY.4.30.000842
ORF1ab/nsp2200P200SCctTct11AY.4.40.000409
ORF1ab/nsp2200P200SCctTct11AY.410.000294
ORF1ab/nsp2200P200delCCT---11AY.430.000004
ORF1ab/nsp2200P200delCCT---11AY.440.000006
ORF1ab/nsp2200P200RcCtcGt11AY.440.000006
ORF1ab/nsp2200P200PccTccC11AY.450.000122
ORF1ab/nsp2200P200SCctTct11AY.450.000122
ORF1ab/nsp2200P200LcCtcTt11AY.450.000122
ORF1ab/nsp2200P200SCctTct11AY.460.000104
ORF1ab/nsp2200P200LcCtcTt11AY.46.10.001027
ORF1ab/nsp2200P200PccTccC11AY.46.40.000165
ORF1ab/nsp2200P200HcCtcAt11AY.46.40.000165
ORF1ab/nsp2200P200HcCtcAt11AY.470.000031
ORF1ab/nsp2200P200ICCtATt11AY.50.000021
ORF1ab/nsp2200P200TCctAct11AY.50.000021
ORF1ab/nsp2200P200SCctTct11AY.530.000288
ORF1ab/nsp2200P200PccTccC11AY.540.000095
ORF1ab/nsp2200P200SCctTct11AY.540.000095
ORF1ab/nsp2200P200delCCT---11AY.60.000041
ORF1ab/nsp2200P200LcCtcTt11AY.60.000041
ORF1ab/nsp2200P200TCctAct11AY.650.000533
ORF1ab/nsp2200P200TCctAct11AY.680.000274
ORF1ab/nsp2200P200SCctTct11AY.690.000187
ORF1ab/nsp2200P200HcCtcAt11AY.7.10.000113
ORF1ab/nsp2200P200LcCtcTt11AY.700.000209
ORF1ab/nsp2200P200TCctAct11AY.750.000056
ORF1ab/nsp2200P200PccTccC11AY.750.000056
ORF1ab/nsp2200P200delCCT---11AY.750.000056
ORF1ab/nsp2200P200HcCtcAt11AY.750.000056
ORF1ab/nsp2200P200TCctAct11AY.75.10.00018
ORF1ab/nsp2200P200HcCtcAt11AY.850.000427
ORF1ab/nsp2200P200LcCtcTt11AY.90.000068
ORF1ab/nsp2200P200LcCtcTt11AY.9.10.000084
ORF1ab/nsp2200P200delCCT---11AY.9.20.000037
ORF1ab/nsp2200P200HcCtcAt11AY.9.20.000037
ORF1ab/nsp2200P200SCctTct11AY.9.20.000037
ORF1ab/nsp2200P200SCctTct11AY.920.000287
ORF1ab/nsp2200P200SCctTct11AY.980.000079
ORF1ab/nsp2200P200TCctAct11AY.980.000079
ORF1ab/nsp2200P200HcCtcAt11AY.98.10.000048
ORF1ab/nsp2200P200PccTccC11AY.99.20.000092
ORF1ab/nsp2200P200HcCtcAt11AY.99.20.000092
ORF1ab/nsp2200P200LcCtcTt11AZ.30.00152
ORF1ab/nsp2200P200HcCtcAt11B0.000128
ORF1ab/nsp2200P200RcCtcGt11B.10.000009
ORF1ab/nsp2200P200delCCT---11B.1.10.000018
ORF1ab/nsp2200P200LcCtcTt11B.1.1.1480.008772
ORF1ab/nsp2200P200SCctTct11B.1.1.1570.000913
ORF1ab/nsp2200P200PccTccC11B.1.1.1940.00495
ORF1ab/nsp2200P200LcCtcTt11B.1.1.2140.000055
ORF1ab/nsp2200P200SCctTct11B.1.1.2220.000204
ORF1ab/nsp2200P200HcCtcAt11B.1.1.2220.000204
ORF1ab/nsp2200P200delCCT---11B.1.1.2840.000107
ORF1ab/nsp2200P200HcCtcAt11B.1.1.290.010309
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3030.002762
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3060.000438
ORF1ab/nsp2200P200TCctAct11B.1.1.3060.000438
ORF1ab/nsp2200P200delCCT---11B.1.1.3150.008475
ORF1ab/nsp2200P200PccTccG11B.1.1.3160.000925
ORF1ab/nsp2200P200SCctTct11B.1.1.3170.000412
ORF1ab/nsp2200P200LcCtcTt11B.1.1.330.000421
ORF1ab/nsp2200P200TCctAct11B.1.1.370.000193
ORF1ab/nsp2200P200HcCtcAt11B.1.1.3720.000689
ORF1ab/nsp2200P200SCctTct11B.1.1.3750.011905
ORF1ab/nsp2200P200HcCtcAt11B.1.1.3780.007299
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3890.006061
ORF1ab/nsp2200P200HcCtcAt11B.1.1.3970.002252
ORF1ab/nsp2200P200SCctTct11B.1.1.3980.003226
ORF1ab/nsp2200P200LcCtcTt11B.1.1.4090.002833
ORF1ab/nsp2200P200TCctAct11B.1.1.4480.002033
ORF1ab/nsp2200P200delCCT---11B.1.1.4480.002033
ORF1ab/nsp2200P200HcCtcAt11B.1.1.500.000679
ORF1ab/nsp2200P200RcCtcGt11B.1.1100.004525
ORF1ab/nsp2200P200SCctTct11B.1.1110.001175
ORF1ab/nsp2200P200delCCT---11B.1.1400.018868
ORF1ab/nsp2200P200HcCtcAt11B.1.1420.002899
ORF1ab/nsp2200P200HcCtcAt11B.1.1600.000031
ORF1ab/nsp2200P200SCctTct11B.1.160.170.001701
ORF1ab/nsp2200P200del2CCt--t11B.1.1770.000013
ORF1ab/nsp2200P200delCCT---11B.1.177.150.000631
ORF1ab/nsp2200P200SCctTct11B.1.177.160.000664
ORF1ab/nsp2200P200PccTccA11B.1.177.170.000821
ORF1ab/nsp2200P200LcCtcTt11B.1.177.210.000076
ORF1ab/nsp2200P200PccTccA11B.1.177.410.0025
ORF1ab/nsp2200P200SCctTct11B.1.177.420.000894
ORF1ab/nsp2200P200delCCT---11B.1.177.510.004566
ORF1ab/nsp2200P200delCCT---11B.1.177.560.000668
ORF1ab/nsp2200P200TCctAct11B.1.177.570.000281
ORF1ab/nsp2200P200SCctTct11B.1.177.580.001332
ORF1ab/nsp2200P200LcCtcTt11B.1.177.620.001192
ORF1ab/nsp2200P200TCctAct11B.1.177.730.000566
ORF1ab/nsp2200P200delCCT---11B.1.177.730.000566
ORF1ab/nsp2200P200LcCtcTt11B.1.177.730.000566
ORF1ab/nsp2200P200SCctTct11B.1.2100.002132
ORF1ab/nsp2200P200SCctTct11B.1.230.006061
ORF1ab/nsp2200P200HcCtcAt11B.1.2340.000132
ORF1ab/nsp2200P200PccTccC11B.1.2340.000132
ORF1ab/nsp2200P200PccTccG11B.1.2360.002053
ORF1ab/nsp2200P200delCCT---11B.1.2420.018868
ORF1ab/nsp2200P200HcCtcAt11B.1.2430.00007
ORF1ab/nsp2200P200TCctAct11B.1.2580.000067
ORF1ab/nsp2200P200SCctTct11B.1.258.110.000396
ORF1ab/nsp2200P200TCctAct11B.1.258.170.000104
ORF1ab/nsp2200P200LcCtcTt11B.1.258.170.000104
ORF1ab/nsp2200P200SCctTct11B.1.2600.003344
ORF1ab/nsp2200P200LcCtcTt11B.1.2790.000514
ORF1ab/nsp2200P200PccTccC11B.1.3510.00003
ORF1ab/nsp2200P200LcCtcTt11B.1.351.30.000876
ORF1ab/nsp2200P200SCctTct11B.1.360.000146
ORF1ab/nsp2200P200delCCT---11B.1.36.180.00042
ORF1ab/nsp2200P200HcCtcAt11B.1.36.190.009259
ORF1ab/nsp2200P200HcCtcAt11B.1.36.290.000517
ORF1ab/nsp2200P200SCctTct11B.1.36.310.001751
ORF1ab/nsp2200P200SCctTct11B.1.36.380.001642
ORF1ab/nsp2200P200PccTccC11B.1.3620.001541
ORF1ab/nsp2200P200LcCtcTt11B.1.3670.000792
ORF1ab/nsp2200P200TCctAct11B.1.390.003906
ORF1ab/nsp2200P200SCctTct11B.1.4000.000429
ORF1ab/nsp2200P200LcCtcTt11B.1.4150.014286
ORF1ab/nsp2200P200LcCtcTt11B.1.4250.002994
ORF1ab/nsp2200P200delCCT---11B.1.4290.000024
ORF1ab/nsp2200P200HcCtcAt11B.1.440.008333
ORF1ab/nsp2200P200HcCtcAt11B.1.4560.003268
ORF1ab/nsp2200P200PccTccA11B.1.4590.004082
ORF1ab/nsp2200P200LcCtcTt11B.1.4990.00105
ORF1ab/nsp2200P200PccTccC11B.1.5250.000113
ORF1ab/nsp2200P200LcCtcTt11B.1.5250.000113
ORF1ab/nsp2200P200SCctTct11B.1.5260.000024
ORF1ab/nsp2200P200HcCtcAt11B.1.5260.000024
ORF1ab/nsp2200P200HcCtcAt11B.1.5330.009615
ORF1ab/nsp2200P200RcCtcGt11B.1.5610.000397
ORF1ab/nsp2200P200HcCtcAt11B.1.5940.03125
ORF1ab/nsp2200P200PccTccC11B.1.5950.000261
ORF1ab/nsp2200P200LcCtcTt11B.1.5950.000261
ORF1ab/nsp2200P200SCctTct11B.1.5960.000087
ORF1ab/nsp2200P200TCctAct11B.1.6090.000479
ORF1ab/nsp2200P200HcCtcAt11B.1.617.10.000129
ORF1ab/nsp2200P200SCctTct11B.1.617.10.000129
ORF1ab/nsp2200P200delCCT---11B.1.617.20.000004
ORF1ab/nsp2200P200RcCtcGt11B.1.617.20.000004
ORF1ab/nsp2200P200delCCT---11B.1.6210.000089
ORF1ab/nsp2200P200HcCtcAt11B.1.6210.000089
ORF1ab/nsp2200P200SCctTct11B.1.6210.000089
ORF1ab/nsp2200P200HcCtcAt11B.30.000831
ORF1ab/nsp2200P200LcCtcTt11B.420.033333
ORF1ab/nsp2200P200LcCtcTt11B.570.015152
ORF1ab/nsp2200P200LcCtcTt11C.270.018519
ORF1ab/nsp2200P200delCCT---11C.360.000911
ORF1ab/nsp2200P200SCctTct11D.20.000075
ORF1ab/nsp2200P200PccTccC11D.20.000075
ORF1ab/nsp2200P200HcCtcAt11N.10.016949
ORF1ab/nsp2200P200LcCtcTt11P.1.120.000484
ORF1ab/nsp2200P200PccTccG11P.1.120.000484
ORF1ab/nsp2200P200LcCtcTt11P.1.160.000374
ORF1ab/nsp2200P200TCctAct11P.1.170.000162
ORF1ab/nsp2200P200LcCtcTt11P.20.000187
ORF1ab/nsp2200P200TCctAct11Q.10.000126
ORF1ab/nsp2200P200SCctTct11Q.10.000126
ORF1ab/nsp2200P200HcCtcAt11Q.10.000126
ORF1ab/nsp2200P200LcCtcTt11Q.10.000126
ORF1ab/nsp2200P200LcCtcTt11Q.30.000145
ORF1ab/nsp2200P200LcCtcTt11Q.80.000165
ORF1ab/nsp2200P200SCctTct11Q.80.000165
ORF1ab/nsp2200P200delCCT---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.