CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 200

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2200P200LP380LnonsyncCtcTt17000169780.9987061403-1405
ORF1ab/nsp2200P200LP380LnonsyncCTcTC17000210.001235291403-1405
ORF1ab/nsp2200P200LP380LnonsyncCTcTG1700010.00005882351403-1405
ORF1ab/nsp2200P200SP380SnonsynCctTct242024180.9991741403-1405
ORF1ab/nsp2200P200SP380SnonsynCcTTcG242010.0004132231403-1405
ORF1ab/nsp2200P200SP380SnonsynCcTTcC242010.0004132231403-1405
ORF1ab/nsp2200P200PP380PsynccTccC218320400.9344941403-1405
ORF1ab/nsp2200P200PP380PsynccTccA2183890.04076961403-1405
ORF1ab/nsp2200P200PP380PsynccTccG2183540.02473661403-1405
ORF1ab/nsp2200P200HP380HnonsyncCtcAt24224211403-1405
ORF1ab/nsp2200P200TP380TnonsynCctAct11911911403-1405
ORF1ab/nsp2200P200delP380deldelCCT---717111403-1405
ORF1ab/nsp2200P200RP380RnonsyncCtcGt101011403-1405
ORF1ab/nsp2200P200del1P380del1delCct-ct420.51403-1405
ORF1ab/nsp2200P200del1P380del1delccTcc-420.51403-1405
ORF1ab/nsp2200P200IP380InonsynCCtATt1111403-1405
ORF1ab/nsp2200P200del2P380del2delCCt--t1111403-1405
ORF1ab/nsp2200P200FP380FnonsynCCtTTt1111403-1405

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2200P200LcCtcTt1697817000All0.003247
ORF1ab/nsp2200P200LcCTcTC2117000All0.000004
ORF1ab/nsp2200P200LcCTcTG117000All0
ORF1ab/nsp2200P200LcCtcTt1194011961AY.230.83281
ORF1ab/nsp2200P200LcCTcTC2111961AY.230.001465
ORF1ab/nsp2200P200SCctTct24182420All0.000462
ORF1ab/nsp2200P200SCcTTcG12420All0
ORF1ab/nsp2200P200SCcTTcC12420All0
ORF1ab/nsp2200P200LcCtcTt23912391AY.23.10.997913
ORF1ab/nsp2200P200PccTccC20402183All0.00039
ORF1ab/nsp2200P200PccTccA892183All0.000017
ORF1ab/nsp2200P200PccTccG542183All0.00001
ORF1ab/nsp2200P200PccTccC16811697AY.40.002616
ORF1ab/nsp2200P200PccTccA161697AY.40.000025
ORF1ab/nsp2200P200SCctTct15171517AY.570.995407
ORF1ab/nsp2200P200LcCtcTt722722B.1.3510.021463
ORF1ab/nsp2200P200LcCtcTt578578AY.40.0009
ORF1ab/nsp2200P200LcCtcTt273273AY.1160.078291
ORF1ab/nsp2200P200SCctTct245245B.1.1.70.000219
ORF1ab/nsp2200P200HcCtcAt242242All0.000046
ORF1ab/nsp2200P200SCctTct225225AY.250.001353
ORF1ab/nsp2200P200LcCtcTt201201B.1.1.70.00018
ORF1ab/nsp2200P200PccTccC150150AY.4.20.003253
ORF1ab/nsp2200P200TCctAct119119All0.000023
ORF1ab/nsp2200P200LcCtcTt8484AY.440.000511
ORF1ab/nsp2200P200LcCtcTt8181AY.1200.003011
ORF1ab/nsp2200P200PccTccA4676B.1.1.70.000041
ORF1ab/nsp2200P200PccTccC2876B.1.1.70.000025
ORF1ab/nsp2200P200PccTccG276B.1.1.70.000002
ORF1ab/nsp2200P200delCCT---7171All0.000014
ORF1ab/nsp2200P200LcCtcTt6161P.10.000961
ORF1ab/nsp2200P200PccTccC4750B.1.617.20.000177
ORF1ab/nsp2200P200PccTccG250B.1.617.20.000008
ORF1ab/nsp2200P200PccTccA150B.1.617.20.000004
ORF1ab/nsp2200P200LcCtcTt4849B.1.20.000423
ORF1ab/nsp2200P200LcCTcTG149B.1.20.000009
ORF1ab/nsp2200P200LcCtcTt4343B.1.177.150.027129
ORF1ab/nsp2200P200HcCtcAt3838AY.430.000168
ORF1ab/nsp2200P200LcCtcTt3737B.1.617.20.000139
ORF1ab/nsp2200P200PccTccG2136AY.430.000093
ORF1ab/nsp2200P200PccTccC1536AY.430.000066
ORF1ab/nsp2200P200LcCtcTt3333AY.430.000146
ORF1ab/nsp2200P200SCctTct3333B.1.20.000291
ORF1ab/nsp2200P200LcCtcTt3131P.1.40.030273
ORF1ab/nsp2200P200SCctTct3030AY.40.000047
ORF1ab/nsp2200P200LcCtcTt2929AY.250.000174
ORF1ab/nsp2200P200SCctTct2929B.1.1770.000382
ORF1ab/nsp2200P200TCctAct2828AY.99.20.00258
ORF1ab/nsp2200P200HcCtcAt2828B.1.1.70.000025
ORF1ab/nsp2200P200LcCtcTt2727B.1.4290.000635
ORF1ab/nsp2200P200SCctTct2727B.1.617.20.000102
ORF1ab/nsp2200P200SCctTct2525B.1.3590.568182
ORF1ab/nsp2200P200LcCtcTt2323B.10.000211
ORF1ab/nsp2200P200HcCtcAt2323B.1.20.000203
ORF1ab/nsp2200P200LcCtcTt2222AY.240.009483
ORF1ab/nsp2200P200PccTccC2222B.1.5750.006675
ORF1ab/nsp2200P200LcCtcTt2121AY.1030.00013
ORF1ab/nsp2200P200HcCtcAt2020AY.40.000031
ORF1ab/nsp2200P200PccTccC1516AY.1030.000093
ORF1ab/nsp2200P200PccTccA116AY.1030.000006
ORF1ab/nsp2200P200TCctAct1616AY.610.001676
ORF1ab/nsp2200P200delCCT---1616B.1.1.70.000014
ORF1ab/nsp2200P200SCctTct1616B.1.177.180.018561
ORF1ab/nsp2200P200SCctTct1515AY.1030.000093
ORF1ab/nsp2200P200HcCtcAt1515AY.250.00009
ORF1ab/nsp2200P200LcCtcTt1515AY.370.004741
ORF1ab/nsp2200P200HcCtcAt1515B.1.617.20.000056
ORF1ab/nsp2200P200SCctTct1414P.1.10.004447
ORF1ab/nsp2200P200SCctTct1313AY.60.000535
ORF1ab/nsp2200P200TCctAct1313B.1.1.70.000012
ORF1ab/nsp2200P200LcCtcTt1313B.1.360.001897
ORF1ab/nsp2200P200SCctTct1313B.1.4290.000306
ORF1ab/nsp2200P200SCctTct1012AY.440.000061
ORF1ab/nsp2200P200SCcTTcC112AY.440.000006
ORF1ab/nsp2200P200SCcTTcG112AY.440.000006
ORF1ab/nsp2200P200SCctTct1212B.1.1.280.003735
ORF1ab/nsp2200P200LcCtcTt1212B.1.1600.000374
ORF1ab/nsp2200P200LcCtcTt1212B.1.5260.000282
ORF1ab/nsp2200P200PccTccA711AY.30.00007
ORF1ab/nsp2200P200PccTccC311AY.30.00003
ORF1ab/nsp2200P200PccTccG111AY.30.00001
ORF1ab/nsp2200P200PccTccG1011AY.9.20.000367
ORF1ab/nsp2200P200PccTccC111AY.9.20.000037
ORF1ab/nsp2200P200SCctTct1111B.10.000101
ORF1ab/nsp2200P200RcCtcGt1010All0.000002
ORF1ab/nsp2200P200LcCtcTt1010AY.420.000402
ORF1ab/nsp2200P200LcCtcTt99AY.200.00035
ORF1ab/nsp2200P200LcCtcTt99B.1.1.10.00294
ORF1ab/nsp2200P200LcCtcTt99B.1.1.2310.027864
ORF1ab/nsp2200P200LcCtcTt99B.1.1.5190.000357
ORF1ab/nsp2200P200SCctTct99B.1.177.40.0019
ORF1ab/nsp2200P200PccTccC69B.1.4290.000141
ORF1ab/nsp2200P200PccTccG39B.1.4290.000071
ORF1ab/nsp2200P200PccTccC99B.1.5260.000212
ORF1ab/nsp2200P200LcCtcTt88AY.1170.000676
ORF1ab/nsp2200P200LcCtcTt88AY.330.000534
ORF1ab/nsp2200P200delCCT---88AY.40.000012
ORF1ab/nsp2200P200LcCtcTt88AY.98.10.000387
ORF1ab/nsp2200P200HcCtcAt88B.1.10.000145
ORF1ab/nsp2200P200SCctTct77A.10.001973
ORF1ab/nsp2200P200LcCtcTt77AY.1020.000186
ORF1ab/nsp2200P200PccTccC77AY.440.000043
ORF1ab/nsp2200P200SCctTct77AY.750.000392
ORF1ab/nsp2200P200LcCtcTt77B.1.10.000127
ORF1ab/nsp2200P200TCctAct77B.1.1.2160.006233
ORF1ab/nsp2200P200TCctAct77B.1.617.20.000026
ORF1ab/nsp2200P200PccTccC77B.1.6210.00062
ORF1ab/nsp2200P200LcCtcTt66AY.1190.000212
ORF1ab/nsp2200P200LcCtcTt66AY.460.000624
ORF1ab/nsp2200P200PccTccC66B.10.000055
ORF1ab/nsp2200P200SCctTct66B.1.258.170.000624
ORF1ab/nsp2200P200PccTccA45AY.1020.000106
ORF1ab/nsp2200P200PccTccG15AY.1020.000027
ORF1ab/nsp2200P200SCctTct55AY.260.000142
ORF1ab/nsp2200P200SCctTct55AY.430.000022
ORF1ab/nsp2200P200LcCtcTt55AY.590.002648
ORF1ab/nsp2200P200SCctTct55AY.600.00469
ORF1ab/nsp2200P200HcCtcAt55B.10.000046
ORF1ab/nsp2200P200delCCT---55B.1.1.330.002104
ORF1ab/nsp2200P200SCctTct55B.1.1.5190.000199
ORF1ab/nsp2200P200RcCtcGt55B.1.1.70.000004
ORF1ab/nsp2200P200HcCtcAt55B.1.160.300.014881
ORF1ab/nsp2200P200LcCtcTt55B.1.1770.000066
ORF1ab/nsp2200P200LcCtcTt55B.1.2210.000355
ORF1ab/nsp2200P200SCctTct55B.1.3510.000149
ORF1ab/nsp2200P200LcCtcTt55B.1.466.20.001956
ORF1ab/nsp2200P200LcCtcTt55B.1.5750.001517
ORF1ab/nsp2200P200LcCtcTt55B.1.6210.000443
ORF1ab/nsp2200P200LcCtcTt55C.10.011962
ORF1ab/nsp2200P200LcCtcTt55C.370.00058
ORF1ab/nsp2200P200SCctTct55P.10.000079
ORF1ab/nsp2200P200del1Cct-ct24All0
ORF1ab/nsp2200P200del1ccTcc-24All0
ORF1ab/nsp2200P200HcCtcAt44AY.1030.000025
ORF1ab/nsp2200P200LcCtcTt44AY.260.000113
ORF1ab/nsp2200P200SCctTct44AY.290.000063
ORF1ab/nsp2200P200TCctAct44AY.30.00004
ORF1ab/nsp2200P200PccTccG44AY.340.000388
ORF1ab/nsp2200P200TCctAct44AY.40.000006
ORF1ab/nsp2200P200delCCT---44AY.4.50.00043
ORF1ab/nsp2200P200HcCtcAt44AY.440.000024
ORF1ab/nsp2200P200LcCtcTt44AY.470.000124
ORF1ab/nsp2200P200SCctTct44AY.50.000083
ORF1ab/nsp2200P200HcCtcAt44B.1.1.10.001307
ORF1ab/nsp2200P200HcCtcAt44B.1.1260.005102
ORF1ab/nsp2200P200delCCT---44B.1.1770.000053
ORF1ab/nsp2200P200SCctTct44B.1.177.210.000306
ORF1ab/nsp2200P200LcCtcTt44B.1.2100.008529
ORF1ab/nsp2200P200LcCtcTt44B.1.4710.010929
ORF1ab/nsp2200P200LcCtcTt44B.1.5960.000349
ORF1ab/nsp2200P200SCctTct44C.370.000464
ORF1ab/nsp2200P200HcCtcAt44D.20.0003
ORF1ab/nsp2200P200LcCtcTt44P.1.140.000191
ORF1ab/nsp2200P200SCctTct33A.2.50.001497
ORF1ab/nsp2200P200LcCtcTt33A.2.50.001497
ORF1ab/nsp2200P200PccTccC33AY.1000.000138
ORF1ab/nsp2200P200LcCtcTt33AY.1180.000188
ORF1ab/nsp2200P200TCctAct33AY.250.000018
ORF1ab/nsp2200P200SCctTct33AY.30.00003
ORF1ab/nsp2200P200PccTccC33AY.390.000074
ORF1ab/nsp2200P200PccTccC33AY.420.000121
ORF1ab/nsp2200P200SCctTct33AY.46.60.000217
ORF1ab/nsp2200P200HcCtcAt33AY.610.000314
ORF1ab/nsp2200P200SCctTct33AY.620.001307
ORF1ab/nsp2200P200SCctTct33AY.75.10.000541
ORF1ab/nsp2200P200LcCtcTt33AY.920.000862
ORF1ab/nsp2200P200PccTccC13B0.000128
ORF1ab/nsp2200P200PccTccG13B0.000128
ORF1ab/nsp2200P200PccTccA13B0.000128
ORF1ab/nsp2200P200TCctAct33B.10.000027
ORF1ab/nsp2200P200SCctTct33B.1.1.2140.000166
ORF1ab/nsp2200P200delCCT---33B.1.1.3480.002389
ORF1ab/nsp2200P200SCctTct33B.1.1.3840.071429
ORF1ab/nsp2200P200LcCtcTt33B.1.1.4340.001046
ORF1ab/nsp2200P200SCctTct33B.1.1.630.001157
ORF1ab/nsp2200P200LcCtcTt33B.1.1.700.001023
ORF1ab/nsp2200P200LcCtcTt33B.1.177.460.002755
ORF1ab/nsp2200P200LcCtcTt33B.1.2340.000396
ORF1ab/nsp2200P200PccTccA33B.1.2430.000209
ORF1ab/nsp2200P200LcCtcTt33B.1.4000.001287
ORF1ab/nsp2200P200HcCtcAt33B.1.4290.000071
ORF1ab/nsp2200P200HcCtcAt33B.1.5960.000261
ORF1ab/nsp2200P200LcCtcTt33R.10.00027
ORF1ab/nsp2200P200LcCtcTt22A.20.001324
ORF1ab/nsp2200P200LcCtcTt22AY.1060.00067
ORF1ab/nsp2200P200SCctTct22AY.1180.000125
ORF1ab/nsp2200P200SCctTct22AY.1210.000271
ORF1ab/nsp2200P200TCctAct22AY.16.10.00094
ORF1ab/nsp2200P200PccTccC22AY.250.000012
ORF1ab/nsp2200P200delCCT---22AY.30.00002
ORF1ab/nsp2200P200TCctAct22AY.3.10.000171
ORF1ab/nsp2200P200HcCtcAt22AY.330.000134
ORF1ab/nsp2200P200HcCtcAt22AY.4.20.000043
ORF1ab/nsp2200P200LcCtcTt22AY.4.20.000043
ORF1ab/nsp2200P200LcCtcTt22AY.4.30.001684
ORF1ab/nsp2200P200TCctAct22AY.430.000009
ORF1ab/nsp2200P200LcCtcTt22AY.46.30.001867
ORF1ab/nsp2200P200SCctTct22AY.46.40.000329
ORF1ab/nsp2200P200PccTccC22AY.470.000062
ORF1ab/nsp2200P200LcCtcTt22AY.50.000041
ORF1ab/nsp2200P200PccTccA12AY.50.000021
ORF1ab/nsp2200P200PccTccC12AY.50.000021
ORF1ab/nsp2200P200TCctAct22AY.550.001835
ORF1ab/nsp2200P200LcCtcTt22AY.650.001066
ORF1ab/nsp2200P200PccTccC12AY.690.000187
ORF1ab/nsp2200P200PccTccA12AY.690.000187
ORF1ab/nsp2200P200LcCtcTt22AY.7.10.000225
ORF1ab/nsp2200P200SCctTct22AY.730.001331
ORF1ab/nsp2200P200LcCtcTt22AY.750.000112
ORF1ab/nsp2200P200LcCtcTt22AY.760.009662
ORF1ab/nsp2200P200LcCtcTt22AY.9.20.000073
ORF1ab/nsp2200P200LcCtcTt22AY.99.20.000184
ORF1ab/nsp2200P200LcCtcTt22B0.000256
ORF1ab/nsp2200P200delCCT---22B.10.000018
ORF1ab/nsp2200P200PccTccC22B.1.10.000036
ORF1ab/nsp2200P200SCctTct22B.1.10.000036
ORF1ab/nsp2200P200SCctTct22B.1.1.250.001137
ORF1ab/nsp2200P200LcCtcTt22B.1.1.280.000622
ORF1ab/nsp2200P200SCctTct22B.1.1.2840.000215
ORF1ab/nsp2200P200PccTccG22B.1.1.3000.021505
ORF1ab/nsp2200P200SCctTct22B.1.1.3510.005587
ORF1ab/nsp2200P200PccTccC22B.1.1.3620.011236
ORF1ab/nsp2200P200SCctTct22B.1.1.3970.004505
ORF1ab/nsp2200P200PccTccC22B.1.1.4340.000697
ORF1ab/nsp2200P200PccTccC22B.1.1.5180.012658
ORF1ab/nsp2200P200PccTccA22B.1.1.5190.000079
ORF1ab/nsp2200P200HcCtcAt22B.1.1.5190.000079
ORF1ab/nsp2200P200del1ccTcc-22B.1.1.70.000002
ORF1ab/nsp2200P200SCctTct22B.1.1.700.000682
ORF1ab/nsp2200P200SCctTct22B.1.1600.000062
ORF1ab/nsp2200P200PccTccG22B.1.1770.000026
ORF1ab/nsp2200P200HcCtcAt22B.1.1770.000026
ORF1ab/nsp2200P200HcCtcAt22B.1.177.350.001382
ORF1ab/nsp2200P200LcCtcTt22B.1.177.860.000367
ORF1ab/nsp2200P200TCctAct22B.1.20.000018
ORF1ab/nsp2200P200del1Cct-ct22B.1.20.000018
ORF1ab/nsp2200P200PccTccG12B.1.20.000009
ORF1ab/nsp2200P200PccTccA12B.1.20.000009
ORF1ab/nsp2200P200SCctTct22B.1.2340.000264
ORF1ab/nsp2200P200LcCtcTt22B.1.2430.000139
ORF1ab/nsp2200P200LcCtcTt22B.1.2580.000133
ORF1ab/nsp2200P200TCctAct22B.1.3510.000059
ORF1ab/nsp2200P200SCctTct22B.1.351.20.000605
ORF1ab/nsp2200P200SCctTct22B.1.36.180.00084
ORF1ab/nsp2200P200HcCtcAt22B.1.3620.003082
ORF1ab/nsp2200P200LcCtcTt22B.1.4270.000101
ORF1ab/nsp2200P200LcCtcTt22B.1.438.10.000215
ORF1ab/nsp2200P200SCctTct22B.1.466.20.000782
ORF1ab/nsp2200P200LcCtcTt22B.1.5030.004975
ORF1ab/nsp2200P200LcCtcTt22B.1.5170.000854
ORF1ab/nsp2200P200TCctAct22B.1.5240.002813
ORF1ab/nsp2200P200SCctTct22B.1.5610.000794
ORF1ab/nsp2200P200LcCtcTt22B.1.6370.000146
ORF1ab/nsp2200P200SCctTct22C.10.004785
ORF1ab/nsp2200P200SCctTct22C.140.008658
ORF1ab/nsp2200P200delCCT---22N.60.014184
ORF1ab/nsp2200P200HcCtcAt22N.90.011905
ORF1ab/nsp2200P200TCctAct22P.10.000032
ORF1ab/nsp2200P200HcCtcAt22P.10.000032
ORF1ab/nsp2200P200HcCtcAt22P.1.150.000465
ORF1ab/nsp2200P200delCCT---22P.20.000373
ORF1ab/nsp2200P200LcCtcTt22P.30.00319
ORF1ab/nsp2200P200LcCtcTt22Q.70.002222
ORF1ab/nsp2200P200PccTccA11A0.000387
ORF1ab/nsp2200P200LcCtcTt11A.10.000282
ORF1ab/nsp2200P200HcCtcAt11A.20.000662
ORF1ab/nsp2200P200SCctTct11A.23.10.000704
ORF1ab/nsp2200P200LcCtcTt11A.250.018182
ORF1ab/nsp2200P200LcCtcTt11A.270.001656
ORF1ab/nsp2200P200del2CCt--t11All0
ORF1ab/nsp2200P200ICCtATt11All0
ORF1ab/nsp2200P200FCCtTTt11All0
ORF1ab/nsp2200P200LcCtcTt11AU.20.002421
ORF1ab/nsp2200P200LcCtcTt11AY.100.00053
ORF1ab/nsp2200P200SCctTct11AY.1000.000046
ORF1ab/nsp2200P200HcCtcAt11AY.1000.000046
ORF1ab/nsp2200P200LcCtcTt11AY.1000.000046
ORF1ab/nsp2200P200SCctTct11AY.1100.000113
ORF1ab/nsp2200P200PccTccA11AY.1110.000183
ORF1ab/nsp2200P200PccTccC11AY.1130.000142
ORF1ab/nsp2200P200LcCtcTt11AY.1130.000142
ORF1ab/nsp2200P200HcCtcAt11AY.1130.000142
ORF1ab/nsp2200P200SCctTct11AY.1190.000035
ORF1ab/nsp2200P200PccTccC11AY.1200.000037
ORF1ab/nsp2200P200SCctTct11AY.1200.000037
ORF1ab/nsp2200P200delCCT---11AY.1200.000037
ORF1ab/nsp2200P200SCctTct11AY.130.000161
ORF1ab/nsp2200P200SCctTct11AY.160.00038
ORF1ab/nsp2200P200HcCtcAt11AY.160.00038
ORF1ab/nsp2200P200LcCtcTt11AY.160.00038
ORF1ab/nsp2200P200PccTccC11AY.200.000039
ORF1ab/nsp2200P200FCCtTTt11AY.230.00007
ORF1ab/nsp2200P200SCctTct11AY.240.000431
ORF1ab/nsp2200P200PccTccC11AY.260.000028
ORF1ab/nsp2200P200TCctAct11AY.290.000016
ORF1ab/nsp2200P200PccTccC11AY.290.000016
ORF1ab/nsp2200P200LcCtcTt11AY.30.00001
ORF1ab/nsp2200P200HcCtcAt11AY.30.00001
ORF1ab/nsp2200P200PccTccC11AY.3.10.000085
ORF1ab/nsp2200P200HcCtcAt11AY.3.10.000085
ORF1ab/nsp2200P200LcCtcTt11AY.300.000396
ORF1ab/nsp2200P200PccTccC11AY.320.000532
ORF1ab/nsp2200P200SCctTct11AY.340.000097
ORF1ab/nsp2200P200HcCtcAt11AY.360.000148
ORF1ab/nsp2200P200PccTccG11AY.370.000316
ORF1ab/nsp2200P200SCctTct11AY.370.000316
ORF1ab/nsp2200P200SCctTct11AY.39.10.00004
ORF1ab/nsp2200P200SCctTct11AY.4.20.000022
ORF1ab/nsp2200P200delCCT---11AY.4.20.000022
ORF1ab/nsp2200P200LcCtcTt11AY.4.2.10.000149
ORF1ab/nsp2200P200SCctTct11AY.4.30.000842
ORF1ab/nsp2200P200SCctTct11AY.4.40.000409
ORF1ab/nsp2200P200SCctTct11AY.410.000294
ORF1ab/nsp2200P200delCCT---11AY.430.000004
ORF1ab/nsp2200P200delCCT---11AY.440.000006
ORF1ab/nsp2200P200RcCtcGt11AY.440.000006
ORF1ab/nsp2200P200PccTccC11AY.450.000122
ORF1ab/nsp2200P200SCctTct11AY.450.000122
ORF1ab/nsp2200P200LcCtcTt11AY.450.000122
ORF1ab/nsp2200P200SCctTct11AY.460.000104
ORF1ab/nsp2200P200LcCtcTt11AY.46.10.001027
ORF1ab/nsp2200P200PccTccC11AY.46.40.000165
ORF1ab/nsp2200P200HcCtcAt11AY.46.40.000165
ORF1ab/nsp2200P200HcCtcAt11AY.470.000031
ORF1ab/nsp2200P200ICCtATt11AY.50.000021
ORF1ab/nsp2200P200TCctAct11AY.50.000021
ORF1ab/nsp2200P200SCctTct11AY.530.000288
ORF1ab/nsp2200P200PccTccC11AY.540.000095
ORF1ab/nsp2200P200SCctTct11AY.540.000095
ORF1ab/nsp2200P200delCCT---11AY.60.000041
ORF1ab/nsp2200P200LcCtcTt11AY.60.000041
ORF1ab/nsp2200P200TCctAct11AY.650.000533
ORF1ab/nsp2200P200TCctAct11AY.680.000274
ORF1ab/nsp2200P200SCctTct11AY.690.000187
ORF1ab/nsp2200P200HcCtcAt11AY.7.10.000113
ORF1ab/nsp2200P200LcCtcTt11AY.700.000209
ORF1ab/nsp2200P200TCctAct11AY.750.000056
ORF1ab/nsp2200P200PccTccC11AY.750.000056
ORF1ab/nsp2200P200delCCT---11AY.750.000056
ORF1ab/nsp2200P200HcCtcAt11AY.750.000056
ORF1ab/nsp2200P200TCctAct11AY.75.10.00018
ORF1ab/nsp2200P200HcCtcAt11AY.850.000427
ORF1ab/nsp2200P200LcCtcTt11AY.90.000068
ORF1ab/nsp2200P200LcCtcTt11AY.9.10.000084
ORF1ab/nsp2200P200delCCT---11AY.9.20.000037
ORF1ab/nsp2200P200HcCtcAt11AY.9.20.000037
ORF1ab/nsp2200P200SCctTct11AY.9.20.000037
ORF1ab/nsp2200P200SCctTct11AY.920.000287
ORF1ab/nsp2200P200SCctTct11AY.980.000079
ORF1ab/nsp2200P200TCctAct11AY.980.000079
ORF1ab/nsp2200P200HcCtcAt11AY.98.10.000048
ORF1ab/nsp2200P200PccTccC11AY.99.20.000092
ORF1ab/nsp2200P200HcCtcAt11AY.99.20.000092
ORF1ab/nsp2200P200LcCtcTt11AZ.30.00152
ORF1ab/nsp2200P200HcCtcAt11B0.000128
ORF1ab/nsp2200P200RcCtcGt11B.10.000009
ORF1ab/nsp2200P200delCCT---11B.1.10.000018
ORF1ab/nsp2200P200LcCtcTt11B.1.1.1480.008772
ORF1ab/nsp2200P200SCctTct11B.1.1.1570.000913
ORF1ab/nsp2200P200PccTccC11B.1.1.1940.00495
ORF1ab/nsp2200P200LcCtcTt11B.1.1.2140.000055
ORF1ab/nsp2200P200SCctTct11B.1.1.2220.000204
ORF1ab/nsp2200P200HcCtcAt11B.1.1.2220.000204
ORF1ab/nsp2200P200delCCT---11B.1.1.2840.000107
ORF1ab/nsp2200P200HcCtcAt11B.1.1.290.010309
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3030.002762
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3060.000438
ORF1ab/nsp2200P200TCctAct11B.1.1.3060.000438
ORF1ab/nsp2200P200delCCT---11B.1.1.3150.008475
ORF1ab/nsp2200P200PccTccG11B.1.1.3160.000925
ORF1ab/nsp2200P200SCctTct11B.1.1.3170.000412
ORF1ab/nsp2200P200LcCtcTt11B.1.1.330.000421
ORF1ab/nsp2200P200TCctAct11B.1.1.370.000193
ORF1ab/nsp2200P200HcCtcAt11B.1.1.3720.000689
ORF1ab/nsp2200P200SCctTct11B.1.1.3750.011905
ORF1ab/nsp2200P200HcCtcAt11B.1.1.3780.007299
ORF1ab/nsp2200P200LcCtcTt11B.1.1.3890.006061
ORF1ab/nsp2200P200HcCtcAt11B.1.1.3970.002252
ORF1ab/nsp2200P200SCctTct11B.1.1.3980.003226
ORF1ab/nsp2200P200LcCtcTt11B.1.1.4090.002833
ORF1ab/nsp2200P200TCctAct11B.1.1.4480.002033
ORF1ab/nsp2200P200delCCT---11B.1.1.4480.002033
ORF1ab/nsp2200P200HcCtcAt11B.1.1.500.000679
ORF1ab/nsp2200P200RcCtcGt11B.1.1100.004525
ORF1ab/nsp2200P200SCctTct11B.1.1110.001175
ORF1ab/nsp2200P200delCCT---11B.1.1400.018868
ORF1ab/nsp2200P200HcCtcAt11B.1.1420.002899
ORF1ab/nsp2200P200HcCtcAt11B.1.1600.000031
ORF1ab/nsp2200P200SCctTct11B.1.160.170.001701
ORF1ab/nsp2200P200del2CCt--t11B.1.1770.000013
ORF1ab/nsp2200P200delCCT---11B.1.177.150.000631
ORF1ab/nsp2200P200SCctTct11B.1.177.160.000664
ORF1ab/nsp2200P200PccTccA11B.1.177.170.000821
ORF1ab/nsp2200P200LcCtcTt11B.1.177.210.000076
ORF1ab/nsp2200P200PccTccA11B.1.177.410.0025
ORF1ab/nsp2200P200SCctTct11B.1.177.420.000894
ORF1ab/nsp2200P200delCCT---11B.1.177.510.004566
ORF1ab/nsp2200P200delCCT---11B.1.177.560.000668
ORF1ab/nsp2200P200TCctAct11B.1.177.570.000281
ORF1ab/nsp2200P200SCctTct11B.1.177.580.001332
ORF1ab/nsp2200P200LcCtcTt11B.1.177.620.001192
ORF1ab/nsp2200P200TCctAct11B.1.177.730.000566
ORF1ab/nsp2200P200delCCT---11B.1.177.730.000566
ORF1ab/nsp2200P200LcCtcTt11B.1.177.730.000566
ORF1ab/nsp2200P200SCctTct11B.1.2100.002132
ORF1ab/nsp2200P200SCctTct11B.1.230.006061
ORF1ab/nsp2200P200HcCtcAt11B.1.2340.000132
ORF1ab/nsp2200P200PccTccC11B.1.2340.000132
ORF1ab/nsp2200P200PccTccG11B.1.2360.002053
ORF1ab/nsp2200P200delCCT---11B.1.2420.018868
ORF1ab/nsp2200P200HcCtcAt11B.1.2430.00007
ORF1ab/nsp2200P200TCctAct11B.1.2580.000067
ORF1ab/nsp2200P200SCctTct11B.1.258.110.000396
ORF1ab/nsp2200P200TCctAct11B.1.258.170.000104
ORF1ab/nsp2200P200LcCtcTt11B.1.258.170.000104
ORF1ab/nsp2200P200SCctTct11B.1.2600.003344
ORF1ab/nsp2200P200LcCtcTt11B.1.2790.000514
ORF1ab/nsp2200P200PccTccC11B.1.3510.00003
ORF1ab/nsp2200P200LcCtcTt11B.1.351.30.000876
ORF1ab/nsp2200P200SCctTct11B.1.360.000146
ORF1ab/nsp2200P200delCCT---11B.1.36.180.00042
ORF1ab/nsp2200P200HcCtcAt11B.1.36.190.009259
ORF1ab/nsp2200P200HcCtcAt11B.1.36.290.000517
ORF1ab/nsp2200P200SCctTct11B.1.36.310.001751
ORF1ab/nsp2200P200SCctTct11B.1.36.380.001642
ORF1ab/nsp2200P200PccTccC11B.1.3620.001541
ORF1ab/nsp2200P200LcCtcTt11B.1.3670.000792
ORF1ab/nsp2200P200TCctAct11B.1.390.003906
ORF1ab/nsp2200P200SCctTct11B.1.4000.000429
ORF1ab/nsp2200P200LcCtcTt11B.1.4150.014286
ORF1ab/nsp2200P200LcCtcTt11B.1.4250.002994
ORF1ab/nsp2200P200delCCT---11B.1.4290.000024
ORF1ab/nsp2200P200HcCtcAt11B.1.440.008333
ORF1ab/nsp2200P200HcCtcAt11B.1.4560.003268
ORF1ab/nsp2200P200PccTccA11B.1.4590.004082
ORF1ab/nsp2200P200LcCtcTt11B.1.4990.00105
ORF1ab/nsp2200P200PccTccC11B.1.5250.000113
ORF1ab/nsp2200P200LcCtcTt11B.1.5250.000113
ORF1ab/nsp2200P200SCctTct11B.1.5260.000024
ORF1ab/nsp2200P200HcCtcAt11B.1.5260.000024
ORF1ab/nsp2200P200HcCtcAt11B.1.5330.009615
ORF1ab/nsp2200P200RcCtcGt11B.1.5610.000397
ORF1ab/nsp2200P200HcCtcAt11B.1.5940.03125
ORF1ab/nsp2200P200PccTccC11B.1.5950.000261
ORF1ab/nsp2200P200LcCtcTt11B.1.5950.000261
ORF1ab/nsp2200P200SCctTct11B.1.5960.000087
ORF1ab/nsp2200P200TCctAct11B.1.6090.000479
ORF1ab/nsp2200P200HcCtcAt11B.1.617.10.000129
ORF1ab/nsp2200P200SCctTct11B.1.617.10.000129
ORF1ab/nsp2200P200delCCT---11B.1.617.20.000004
ORF1ab/nsp2200P200RcCtcGt11B.1.617.20.000004
ORF1ab/nsp2200P200delCCT---11B.1.6210.000089
ORF1ab/nsp2200P200HcCtcAt11B.1.6210.000089
ORF1ab/nsp2200P200SCctTct11B.1.6210.000089
ORF1ab/nsp2200P200HcCtcAt11B.30.000831
ORF1ab/nsp2200P200LcCtcTt11B.420.033333
ORF1ab/nsp2200P200LcCtcTt11B.570.015152
ORF1ab/nsp2200P200LcCtcTt11C.270.018519
ORF1ab/nsp2200P200delCCT---11C.360.000911
ORF1ab/nsp2200P200SCctTct11D.20.000075
ORF1ab/nsp2200P200PccTccC11D.20.000075
ORF1ab/nsp2200P200HcCtcAt11N.10.016949
ORF1ab/nsp2200P200LcCtcTt11P.1.120.000484
ORF1ab/nsp2200P200PccTccG11P.1.120.000484
ORF1ab/nsp2200P200LcCtcTt11P.1.160.000374
ORF1ab/nsp2200P200TCctAct11P.1.170.000162
ORF1ab/nsp2200P200LcCtcTt11P.20.000187
ORF1ab/nsp2200P200TCctAct11Q.10.000126
ORF1ab/nsp2200P200SCctTct11Q.10.000126
ORF1ab/nsp2200P200HcCtcAt11Q.10.000126
ORF1ab/nsp2200P200LcCtcTt11Q.10.000126
ORF1ab/nsp2200P200LcCtcTt11Q.30.000145
ORF1ab/nsp2200P200LcCtcTt11Q.80.000165
ORF1ab/nsp2200P200SCctTct11Q.80.000165
ORF1ab/nsp2200P200delCCT---11U.30.003861