CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 194 | H194H | H374H | syn | caC | caT | 7744 | 7744 | 1 | 1385-1387 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 7744 | 7744 | All | 0.001481 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1431 | 1431 | AY.67 | 0.664345 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1252 | 1252 | B.1.1.7 | 0.001121 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 516 | 516 | AY.4 | 0.000803 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 467 | 467 | B.1.2 | 0.004112 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 444 | 444 | AY.4.2.1 | 0.06615 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 397 | 397 | B.1.617.2 | 0.001495 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 333 | 333 | AY.44 | 0.002027 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 205 | 205 | B.1 | 0.001878 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 193 | 193 | AY.25 | 0.001161 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 122 | 122 | B.1.544 | 0.73494 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 112 | 112 | B.1.1 | 0.002032 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 105 | 105 | AY.43 | 0.000465 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 101 | 101 | AY.103 | 0.000627 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 97 | 97 | P.1 | 0.001528 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 74 | 74 | AY.39 | 0.001829 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 74 | 74 | B.1.177 | 0.000974 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 71 | 71 | AY.102 | 0.001882 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 63 | 63 | B.1.588 | 0.057325 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 62 | 62 | B.1.429 | 0.001459 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 56 | 56 | B.1.160 | 0.001747 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 52 | 52 | AY.5 | 0.001074 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 48 | 48 | AY.3 | 0.000477 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 36 | 36 | B.1.1.165 | 0.553846 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 36 | 36 | B.1.1.222 | 0.007344 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 36 | 36 | B.1.526 | 0.000846 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 35 | 35 | AY.4.2 | 0.000759 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 32 | 32 | B.1.177.86 | 0.00587 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 30 | 30 | B.1.1.519 | 0.001191 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 30 | 30 | B.1.621 | 0.002656 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 28 | 28 | B.1.234 | 0.003694 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 27 | 27 | B.1.258 | 0.001797 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 25 | 25 | AY.6 | 0.001028 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 25 | 25 | B.1.596 | 0.002178 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 23 | 23 | AY.116 | 0.006596 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 23 | 23 | AY.120 | 0.000855 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 23 | 23 | B.1.525 | 0.002603 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 22 | 22 | B.1.1.50 | 0.014936 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 21 | 21 | AY.100 | 0.000966 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 21 | 21 | AY.46.5 | 0.004167 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 19 | 19 | AY.95 | 0.01446 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 19 | 19 | B.1.1.25 | 0.010802 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 18 | 18 | B.1.1.434 | 0.006274 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 17 | 17 | AY.75 | 0.000952 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 17 | 17 | B.1.265 | 0.021601 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 16 | 16 | AY.33 | 0.001068 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 16 | 16 | B.1.1.383 | 1 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 15 | 15 | AY.14 | 0.00132 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 15 | 15 | B.1.36 | 0.002189 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 13 | 13 | AY.9 | 0.000879 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 13 | 13 | B.1.1.464 | 0.019146 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 13 | 13 | B.1.177.16 | 0.008638 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 13 | 13 | B.1.177.60 | 0.00284 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 13 | 13 | B.1.221 | 0.000923 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 11 | 11 | AY.1 | 0.004353 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 11 | 11 | AY.62 | 0.004793 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 11 | 11 | B.1.239 | 0.013431 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 10 | 10 | AY.45 | 0.001217 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 10 | 10 | AY.48 | 0.004651 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 9 | 9 | AY.75.1 | 0.001623 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 9 | 9 | B.1.366 | 0.043902 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 8 | 8 | AY.93 | 0.002185 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 7 | 7 | AY.12 | 0.002212 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 7 | 7 | B.1.177.79 | 0.016393 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 7 | 7 | P.2 | 0.001306 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | AY.7 | 0.001176 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | B.1.177.23 | 0.019417 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | B.1.486 | 0.666667 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 6 | 6 | P.1.10 | 0.001617 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | AY.107 | 0.00233 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | AY.46.3 | 0.004669 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | AY.77 | 0.005637 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | C.35 | 0.00387 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.38 | 0.001997 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | AY.86 | 0.00332 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.1.1.291 | 0.00297 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.1.139 | 0.002933 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.1.346 | 0.005242 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | B.6.6 | 0.003556 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | A.21 | 0.00831 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.1.204 | 0.009119 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.1.420 | 0.003018 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.13 | 0.007126 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.177.21 | 0.000229 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.177.8 | 0.002257 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.241 | 0.002435 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.343 | 0.0625 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.558 | 0.013699 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.437 | 0.041667 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.438 | 0.013072 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | B.1.9 | 0.012346 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 2 | 2 | P.3 | 0.00319 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.163 | 0.007634 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.70 | 0.005917 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.425 | 0.002994 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.555 | 0.022222 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | B.41 | 0.008 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp2 | 194 | H194H | caC | caT | 1 | 1 | W.2 | 0.004831 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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