CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 186 | V186F | V366F | nonsyn | Gtt | Ttt | 362 | 362 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186V | V366V | syn | gtT | gtA | 287 | 207 | 0.721254 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186V | V366V | syn | gtT | gtC | 287 | 79 | 0.275261 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186V | V366V | syn | gtT | gtG | 287 | 1 | 0.00348432 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186I | V366I | nonsyn | Gtt | Att | 261 | 261 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186A | V366A | nonsyn | gTt | gCt | 53 | 53 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186del | V366del | del | GTT | --- | 48 | 48 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186L | V366L | nonsyn | Gtt | Ctt | 10 | 10 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186del1 | V366del1 | del | Gtt | -tt | 4 | 4 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186del2 | V366del2 | del | gTT | g-- | 3 | 3 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186G | V366G | nonsyn | gTt | gGt | 2 | 2 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186R | V366R | nonsyn | GTt | CGt | 2 | 2 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186P | V366P | nonsyn | GTt | CCt | 2 | 2 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186C | V366C | nonsyn | GTt | TGt | 1 | 1 | 1 | 1361-1363 |
ORF1ab/nsp2 | 186 | V186S | V366S | nonsyn | GTT | AGC | 1 | 1 | 1 | 1361-1363 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 362 | 362 | All | 0.000069 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 207 | 287 | All | 0.00004 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 79 | 287 | All | 0.000015 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtG | 1 | 287 | All | 0 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 261 | 261 | All | 0.00005 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 91 | 91 | AY.4 | 0.000142 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 65 | 71 | B.1.1.7 | 0.000058 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 6 | 71 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 54 | 54 | B.1.1.7 | 0.000048 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 53 | 53 | All | 0.00001 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 48 | 48 | All | 0.000009 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 34 | 34 | AY.102 | 0.000901 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 31 | 31 | B.1.396 | 0.021877 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 22 | 25 | B.1.177 | 0.00029 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 3 | 25 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 24 | 24 | B.1.1.7 | 0.000021 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 19 | 21 | B.1.1 | 0.000345 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 2 | 21 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 15 | 18 | AY.103 | 0.000093 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 3 | 18 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 10 | 15 | AY.4 | 0.000016 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 5 | 15 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 13 | 15 | AY.43 | 0.000058 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 2 | 15 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 14 | 14 | B.1.221.1 | 0.040698 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 14 | 14 | C.18 | 0.036269 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 14 | 14 | C.28 | 0.56 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 6 | 12 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 6 | 12 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 4 | 6 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtG | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 5 | 5 | AY.35 | 0.001165 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp2 | 186 | V186del1 | Gtt | -tt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 186 | V186del2 | gTT | g-- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 2 | 3 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 3 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 3 | 3 | B.1.36.22 | 0.003623 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 186 | V186P | GTt | CCt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 186 | V186R | GTt | CGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 186 | V186G | gTt | gGt | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 186 | V186R | GTt | CGt | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 186 | V186P | GTt | CCt | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 186 | V186C | GTt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 186 | V186S | GTT | AGC | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 186 | V186S | GTT | AGC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 186 | V186C | GTt | TGt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 186 | V186G | gTt | gGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 186 | V186del2 | gTT | g-- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 186 | V186del1 | Gtt | -tt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp2 | 186 | V186del1 | Gtt | -tt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 186 | V186del2 | gTT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 186 | V186del1 | Gtt | -tt | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 186 | V186del1 | Gtt | -tt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 1 | 1 | B.1.571 | 0.009709 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp2 | 186 | V186del2 | gTT | g-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtC | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 186 | V186del | GTT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 186 | V186V | gtT | gtA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 186 | V186G | gTt | gGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 186 | V186A | gTt | gCt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 186 | V186I | Gtt | Att | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 186 | V186L | Gtt | Ctt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 186 | V186F | Gtt | Ttt | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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