CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 186

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2186V186FV366FnonsynGttTtt36236211361-1363
ORF1ab/nsp2186V186VV366VsyngtTgtA2872070.7212541361-1363
ORF1ab/nsp2186V186VV366VsyngtTgtC287790.2752611361-1363
ORF1ab/nsp2186V186VV366VsyngtTgtG28710.003484321361-1363
ORF1ab/nsp2186V186IV366InonsynGttAtt26126111361-1363
ORF1ab/nsp2186V186AV366AnonsyngTtgCt535311361-1363
ORF1ab/nsp2186V186delV366deldelGTT---484811361-1363
ORF1ab/nsp2186V186LV366LnonsynGttCtt101011361-1363
ORF1ab/nsp2186V186del1V366del1delGtt-tt4411361-1363
ORF1ab/nsp2186V186del2V366del2delgTTg--3311361-1363
ORF1ab/nsp2186V186GV366GnonsyngTtgGt2211361-1363
ORF1ab/nsp2186V186RV366RnonsynGTtCGt2211361-1363
ORF1ab/nsp2186V186PV366PnonsynGTtCCt2211361-1363
ORF1ab/nsp2186V186CV366CnonsynGTtTGt1111361-1363
ORF1ab/nsp2186V186SV366SnonsynGTTAGC1111361-1363

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2186V186FGttTtt362362All0.000069
ORF1ab/nsp2186V186VgtTgtA207287All0.00004
ORF1ab/nsp2186V186VgtTgtC79287All0.000015
ORF1ab/nsp2186V186VgtTgtG1287All0
ORF1ab/nsp2186V186IGttAtt261261All0.00005
ORF1ab/nsp2186V186FGttTtt9191AY.40.000142
ORF1ab/nsp2186V186VgtTgtA6571B.1.1.70.000058
ORF1ab/nsp2186V186VgtTgtC671B.1.1.70.000005
ORF1ab/nsp2186V186FGttTtt5454B.1.1.70.000048
ORF1ab/nsp2186V186AgTtgCt5353All0.00001
ORF1ab/nsp2186V186delGTT---4848All0.000009
ORF1ab/nsp2186V186IGttAtt3434AY.1020.000901
ORF1ab/nsp2186V186IGttAtt3434B.1.617.20.000128
ORF1ab/nsp2186V186FGttTtt3131B.1.3960.021877
ORF1ab/nsp2186V186FGttTtt2828P.10.000441
ORF1ab/nsp2186V186VgtTgtA2225B.1.1770.00029
ORF1ab/nsp2186V186VgtTgtC325B.1.1770.00004
ORF1ab/nsp2186V186IGttAtt2424B.1.1.70.000021
ORF1ab/nsp2186V186VgtTgtC1921B.1.10.000345
ORF1ab/nsp2186V186VgtTgtA221B.1.10.000036
ORF1ab/nsp2186V186VgtTgtA1518AY.1030.000093
ORF1ab/nsp2186V186VgtTgtC318AY.1030.000019
ORF1ab/nsp2186V186FGttTtt1818AY.30.000179
ORF1ab/nsp2186V186FGttTtt1717AY.1030.000106
ORF1ab/nsp2186V186FGttTtt1717AY.440.000103
ORF1ab/nsp2186V186IGttAtt1515AY.30.000149
ORF1ab/nsp2186V186VgtTgtA1015AY.40.000016
ORF1ab/nsp2186V186VgtTgtC515AY.40.000008
ORF1ab/nsp2186V186VgtTgtA1315AY.430.000058
ORF1ab/nsp2186V186VgtTgtC215AY.430.000009
ORF1ab/nsp2186V186IGttAtt1414AY.250.000084
ORF1ab/nsp2186V186AgTtgCt1414B.1.1.70.000013
ORF1ab/nsp2186V186IGttAtt1414B.1.221.10.040698
ORF1ab/nsp2186V186FGttTtt1414C.180.036269
ORF1ab/nsp2186V186IGttAtt1414C.280.56
ORF1ab/nsp2186V186VgtTgtC1313B.1.20.000114
ORF1ab/nsp2186V186VgtTgtA1313B.1.2580.000865
ORF1ab/nsp2186V186VgtTgtA1212AY.290.000189
ORF1ab/nsp2186V186VgtTgtC612AY.30.00006
ORF1ab/nsp2186V186VgtTgtA612AY.30.00006
ORF1ab/nsp2186V186FGttTtt1212B.1.617.20.000045
ORF1ab/nsp2186V186FGttTtt1111AY.290.000174
ORF1ab/nsp2186V186IGttAtt1111AY.40.000017
ORF1ab/nsp2186V186LGttCtt1010All0.000002
ORF1ab/nsp2186V186FGttTtt1010B.10.000092
ORF1ab/nsp2186V186IGttAtt88AY.440.000049
ORF1ab/nsp2186V186delGTT---88B.1.1.70.000007
ORF1ab/nsp2186V186AgTtgCt77AY.40.000011
ORF1ab/nsp2186V186VgtTgtA77AY.920.002011
ORF1ab/nsp2186V186IGttAtt77B.1.10.000127
ORF1ab/nsp2186V186FGttTtt77R.10.00063
ORF1ab/nsp2186V186IGttAtt66B.1.1770.000079
ORF1ab/nsp2186V186VgtTgtA46B.1.617.20.000015
ORF1ab/nsp2186V186VgtTgtC16B.1.617.20.000004
ORF1ab/nsp2186V186VgtTgtG16B.1.617.20.000004
ORF1ab/nsp2186V186VgtTgtA55AY.1190.000177
ORF1ab/nsp2186V186IGttAtt55AY.1190.000177
ORF1ab/nsp2186V186VgtTgtA55AY.3.10.000426
ORF1ab/nsp2186V186AgTtgCt55AY.350.001165
ORF1ab/nsp2186V186IGttAtt55AY.390.000124
ORF1ab/nsp2186V186AgTtgCt55AY.4.50.000537
ORF1ab/nsp2186V186VgtTgtA55AY.440.00003
ORF1ab/nsp2186V186VgtTgtA55AY.750.00028
ORF1ab/nsp2186V186IGttAtt55AY.9.20.000184
ORF1ab/nsp2186V186delGTT---55B.1.1.330.002104
ORF1ab/nsp2186V186FGttTtt55D.20.000375
ORF1ab/nsp2186V186del1Gtt-tt44All0.000001
ORF1ab/nsp2186V186IGttAtt44AY.1200.000149
ORF1ab/nsp2186V186VgtTgtC44AY.46.40.000658
ORF1ab/nsp2186V186FGttTtt44B.1.10.000073
ORF1ab/nsp2186V186FGttTtt44B.1.20.000035
ORF1ab/nsp2186V186IGttAtt44B.1.20.000035
ORF1ab/nsp2186V186del2gTTg--33All0.000001
ORF1ab/nsp2186V186IGttAtt33AY.1030.000019
ORF1ab/nsp2186V186AgTtgCt33AY.4.20.000065
ORF1ab/nsp2186V186VgtTgtC33AY.4.20.000065
ORF1ab/nsp2186V186IGttAtt33AY.430.000013
ORF1ab/nsp2186V186VgtTgtC33AY.850.001282
ORF1ab/nsp2186V186VgtTgtC23AY.98.10.000097
ORF1ab/nsp2186V186VgtTgtA13AY.98.10.000048
ORF1ab/nsp2186V186VgtTgtA33B.10.000027
ORF1ab/nsp2186V186IGttAtt33B.10.000027
ORF1ab/nsp2186V186IGttAtt33B.1.1.1700.003741
ORF1ab/nsp2186V186delGTT---33B.1.1.3480.002389
ORF1ab/nsp2186V186IGttAtt33B.1.1.5190.000119
ORF1ab/nsp2186V186FGttTtt33B.1.36.220.003623
ORF1ab/nsp2186V186VgtTgtC33B.1.36.290.001552
ORF1ab/nsp2186V186delGTT---33B.1.617.20.000011
ORF1ab/nsp2186V186IGttAtt33B.1.6190.002613
ORF1ab/nsp2186V186IGttAtt33C.370.000348
ORF1ab/nsp2186V186IGttAtt33P.10.000047
ORF1ab/nsp2186V186PGTtCCt220.111111
ORF1ab/nsp2186V186LGttCtt220.111111
ORF1ab/nsp2186V186RGTtCGt220.111111
ORF1ab/nsp2186V186GgTtgGt22All0
ORF1ab/nsp2186V186RGTtCGt22All0
ORF1ab/nsp2186V186PGTtCCt22All0
ORF1ab/nsp2186V186FGttTtt22AY.250.000012
ORF1ab/nsp2186V186VgtTgtC12AY.250.000006
ORF1ab/nsp2186V186VgtTgtA12AY.250.000006
ORF1ab/nsp2186V186FGttTtt22AY.390.000049
ORF1ab/nsp2186V186VgtTgtA22AY.390.000049
ORF1ab/nsp2186V186IGttAtt22AY.450.000243
ORF1ab/nsp2186V186FGttTtt22AY.460.000208
ORF1ab/nsp2186V186VgtTgtA22AY.470.000062
ORF1ab/nsp2186V186IGttAtt22AY.470.000062
ORF1ab/nsp2186V186FGttTtt22AY.550.001835
ORF1ab/nsp2186V186IGttAtt22AY.740.000231
ORF1ab/nsp2186V186delGTT---22B.10.000018
ORF1ab/nsp2186V186FGttTtt22B.1.1.2140.000111
ORF1ab/nsp2186V186AgTtgCt22B.1.1.3260.003521
ORF1ab/nsp2186V186LGttCtt22B.1.1.70.000002
ORF1ab/nsp2186V186FGttTtt22B.1.1600.000062
ORF1ab/nsp2186V186IGttAtt22B.1.2340.000264
ORF1ab/nsp2186V186IGttAtt22B.1.3690.00057
ORF1ab/nsp2186V186FGttTtt22B.1.6210.000177
ORF1ab/nsp2186V186FGttTtt22C.160.002121
ORF1ab/nsp2186V186delGTT---22N.60.014184
ORF1ab/nsp2186V186VgtTgtA12P.10.000016
ORF1ab/nsp2186V186VgtTgtC12P.10.000016
ORF1ab/nsp2186V186delGTT---22P.20.000373
ORF1ab/nsp2186V186AgTtgCt11A.2.20.001689
ORF1ab/nsp2186V186AgTtgCt11A.23.10.000704
ORF1ab/nsp2186V186CGTtTGt11All0
ORF1ab/nsp2186V186SGTTAGC11All0
ORF1ab/nsp2186V186IGttAtt11AY.1000.000046
ORF1ab/nsp2186V186AgTtgCt11AY.1030.000006
ORF1ab/nsp2186V186VgtTgtA11AY.1110.000183
ORF1ab/nsp2186V186VgtTgtC11AY.1130.000142
ORF1ab/nsp2186V186AgTtgCt11AY.1130.000142
ORF1ab/nsp2186V186IGttAtt11AY.1130.000142
ORF1ab/nsp2186V186VgtTgtA11AY.1180.000063
ORF1ab/nsp2186V186SGTTAGC11AY.1190.000035
ORF1ab/nsp2186V186delGTT---11AY.1200.000037
ORF1ab/nsp2186V186CGTtTGt11AY.120.10.000321
ORF1ab/nsp2186V186VgtTgtA11AY.130.000161
ORF1ab/nsp2186V186FGttTtt11AY.140.000088
ORF1ab/nsp2186V186delGTT---11AY.190.00114
ORF1ab/nsp2186V186IGttAtt11AY.200.000039
ORF1ab/nsp2186V186FGttTtt11AY.200.000039
ORF1ab/nsp2186V186delGTT---11AY.260.000028
ORF1ab/nsp2186V186IGttAtt11AY.290.000016
ORF1ab/nsp2186V186delGTT---11AY.350.000233
ORF1ab/nsp2186V186IGttAtt11AY.360.000148
ORF1ab/nsp2186V186GgTtgGt11AY.40.000002
ORF1ab/nsp2186V186delGTT---11AY.40.000002
ORF1ab/nsp2186V186IGttAtt11AY.4.20.000022
ORF1ab/nsp2186V186IGttAtt11AY.420.00004
ORF1ab/nsp2186V186FGttTtt11AY.420.00004
ORF1ab/nsp2186V186FGttTtt11AY.430.000004
ORF1ab/nsp2186V186delGTT---11AY.430.000004
ORF1ab/nsp2186V186AgTtgCt11AY.440.000006
ORF1ab/nsp2186V186FGttTtt11AY.450.000122
ORF1ab/nsp2186V186delGTT---11AY.460.000104
ORF1ab/nsp2186V186IGttAtt11AY.530.000288
ORF1ab/nsp2186V186IGttAtt11AY.610.000105
ORF1ab/nsp2186V186AgTtgCt11AY.690.000187
ORF1ab/nsp2186V186IGttAtt11AY.690.000187
ORF1ab/nsp2186V186VgtTgtC11AY.7.10.000113
ORF1ab/nsp2186V186IGttAtt11AY.750.000056
ORF1ab/nsp2186V186delGTT---11AY.750.000056
ORF1ab/nsp2186V186delGTT---11AY.75.10.00018
ORF1ab/nsp2186V186IGttAtt11AY.90.000068
ORF1ab/nsp2186V186FGttTtt11AY.90.000068
ORF1ab/nsp2186V186AgTtgCt11AY.9.20.000037
ORF1ab/nsp2186V186FGttTtt11AY.98.10.000048
ORF1ab/nsp2186V186IGttAtt11AY.99.20.000092
ORF1ab/nsp2186V186FGttTtt11B0.000128
ORF1ab/nsp2186V186del2gTTg--11B0.000128
ORF1ab/nsp2186V186del1Gtt-tt11B.10.000009
ORF1ab/nsp2186V186delGTT---11B.1.10.000018
ORF1ab/nsp2186V186VgtTgtA11B.1.1.3060.000438
ORF1ab/nsp2186V186delGTT---11B.1.1.3150.008475
ORF1ab/nsp2186V186VgtTgtA11B.1.1.330.000421
ORF1ab/nsp2186V186delGTT---11B.1.1.3370.003597
ORF1ab/nsp2186V186FGttTtt11B.1.1.4090.002833
ORF1ab/nsp2186V186delGTT---11B.1.1.4480.002033
ORF1ab/nsp2186V186LGttCtt11B.1.1.460.004367
ORF1ab/nsp2186V186del1Gtt-tt11B.1.1.70.000001
ORF1ab/nsp2186V186del2gTTg--11B.1.1.70.000001
ORF1ab/nsp2186V186del1Gtt-tt11B.1.1040.00369
ORF1ab/nsp2186V186delGTT---11B.1.1400.018868
ORF1ab/nsp2186V186IGttAtt11B.1.1600.000031
ORF1ab/nsp2186V186delGTT---11B.1.177.510.004566
ORF1ab/nsp2186V186delGTT---11B.1.177.730.000566
ORF1ab/nsp2186V186FGttTtt11B.1.177.750.001041
ORF1ab/nsp2186V186FGttTtt11B.1.177.820.000477
ORF1ab/nsp2186V186del1Gtt-tt11B.1.20.000009
ORF1ab/nsp2186V186AgTtgCt11B.1.20.000009
ORF1ab/nsp2186V186AgTtgCt11B.1.2210.000071
ORF1ab/nsp2186V186FGttTtt11B.1.2210.000071
ORF1ab/nsp2186V186delGTT---11B.1.2420.018868
ORF1ab/nsp2186V186FGttTtt11B.1.2430.00007
ORF1ab/nsp2186V186delGTT---11B.1.2580.000067
ORF1ab/nsp2186V186FGttTtt11B.1.2580.000067
ORF1ab/nsp2186V186FGttTtt11B.1.2640.012346
ORF1ab/nsp2186V186AgTtgCt11B.1.2980.002114
ORF1ab/nsp2186V186IGttAtt11B.1.351.20.000303
ORF1ab/nsp2186V186IGttAtt11B.1.36.280.005747
ORF1ab/nsp2186V186IGttAtt11B.1.362.20.004717
ORF1ab/nsp2186V186IGttAtt11B.1.4090.000781
ORF1ab/nsp2186V186FGttTtt11B.1.4270.00005
ORF1ab/nsp2186V186VgtTgtA11B.1.4270.00005
ORF1ab/nsp2186V186delGTT---11B.1.4290.000024
ORF1ab/nsp2186V186IGttAtt11B.1.4290.000024
ORF1ab/nsp2186V186FGttTtt11B.1.4290.000024
ORF1ab/nsp2186V186AgTtgCt11B.1.4800.002488
ORF1ab/nsp2186V186AgTtgCt11B.1.5200.021739
ORF1ab/nsp2186V186delGTT---11B.1.5610.000397
ORF1ab/nsp2186V186LGttCtt11B.1.5710.009709
ORF1ab/nsp2186V186AgTtgCt11B.1.5760.000907
ORF1ab/nsp2186V186delGTT---11B.1.5960.000087
ORF1ab/nsp2186V186IGttAtt11B.1.5960.000087
ORF1ab/nsp2186V186VgtTgtA11B.1.6090.000479
ORF1ab/nsp2186V186FGttTtt11B.1.6120.002653
ORF1ab/nsp2186V186del2gTTg--11B.1.617.20.000004
ORF1ab/nsp2186V186AgTtgCt11B.1.617.20.000004
ORF1ab/nsp2186V186VgtTgtC11B.1.6210.000089
ORF1ab/nsp2186V186delGTT---11B.1.6210.000089
ORF1ab/nsp2186V186VgtTgtC11B.1.6370.000073
ORF1ab/nsp2186V186delGTT---11C.360.000911
ORF1ab/nsp2186V186AgTtgCt11C.370.000116
ORF1ab/nsp2186V186VgtTgtA11D.20.000075
ORF1ab/nsp2186V186GgTtgGt11D.20.000075
ORF1ab/nsp2186V186LGttCtt11P.10.000016
ORF1ab/nsp2186V186AgTtgCt11P.10.000016
ORF1ab/nsp2186V186LGttCtt11P.1.120.000484
ORF1ab/nsp2186V186FGttTtt11P.1.140.000048
ORF1ab/nsp2186V186IGttAtt11P.1.140.000048
ORF1ab/nsp2186V186AgTtgCt11P.1.150.000232
ORF1ab/nsp2186V186IGttAtt11P.1.150.000232
ORF1ab/nsp2186V186LGttCtt11P.1.170.000162
ORF1ab/nsp2186V186IGttAtt11P.1.70.000319
ORF1ab/nsp2186V186LGttCtt11P.20.000187
ORF1ab/nsp2186V186FGttTtt11Q.20.000613