CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 181 | P181S | P361S | nonsyn | Ccc | Tcc | 3114 | 3113 | 0.999679 | 1346-1348 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3113 | 3114 | All | 0.000595 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2056 | 2056 | B.1.1.7 | 0.001841 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 143 | 143 | AY.42 | 0.005753 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 135 | 135 | B.1.1.298 | 0.116379 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 112 | 112 | AY.4 | 0.000174 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 38 | 38 | AY.25 | 0.000229 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 37 | 38 | B.1.617.2 | 0.000139 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 35 | 35 | B.1.2 | 0.000308 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 31 | 31 | AY.4.5 | 0.003332 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 30 | 30 | AY.116 | 0.008603 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 27 | 27 | P.1.17 | 0.004368 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 26 | 26 | Q.8 | 0.004288 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 18 | 18 | B.31 | 0.067164 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 13 | 13 | B.1.429 | 0.000306 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 11 | 11 | B.1.160 | 0.000343 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 10 | 10 | AY.5.3 | 0.003374 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 10 | 10 | AY.96 | 0.020747 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 9 | 9 | AY.46.3 | 0.008403 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 8 | 8 | Q.2 | 0.004908 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3 | 3 | AY.99.1 | 0.004658 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3 | 3 | B.1.1.161 | 0.010601 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3 | 3 | B.1.105 | 0.028846 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | A.27 | 0.003311 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.1.62 | 0.054054 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.110 | 0.00905 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.289 | 0.005319 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 181 | P181S | Ccc | Tcc | 1 | 1 | C.37 | 0.000116 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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