CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 166

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2166T166IT346InonsynaCtaTt509950980.9998041301-1303
ORF1ab/nsp2166T166IT346InonsynaCTaTA509910.0001961171301-1303
ORF1ab/nsp2166T166TT346TsynacTacA13556990.5158671301-1303
ORF1ab/nsp2166T166TT346TsynacTacC13553750.2767531301-1303
ORF1ab/nsp2166T166TT346TsynacTacG13552810.207381301-1303
ORF1ab/nsp2166T166NT346NnonsynaCtaAt2692680.9962831301-1303
ORF1ab/nsp2166T166NT346NnonsynaCTaAC26910.003717471301-1303
ORF1ab/nsp2166T166AT346AnonsynActGct12412411301-1303
ORF1ab/nsp2166T166ST346SnonsynActTct28230.8214291301-1303
ORF1ab/nsp2166T166ST346SnonsynaCtaGt2840.1428571301-1303
ORF1ab/nsp2166T166ST346SnonsynAcTTcC2810.03571431301-1303
ORF1ab/nsp2166T166delT346deldelACT---191911301-1303
ORF1ab/nsp2166T166del1T346del1delacTac-420.51301-1303
ORF1ab/nsp2166T166del1T346del1delAct-ct420.51301-1303
ORF1ab/nsp2166T166PT346PnonsynActCct2211301-1303
ORF1ab/nsp2166T166MT346MnonsynaCTaTG1111301-1303
ORF1ab/nsp2166T166RT346RnonsynACtCGt1111301-1303

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2166T166IaCtaTt50985099All0.000975
ORF1ab/nsp2166T166IaCTaTA15099All0
ORF1ab/nsp2166T166IaCtaTt13741374B.1.1.70.00123
ORF1ab/nsp2166T166TacTacA6991355All0.000134
ORF1ab/nsp2166T166TacTacC3751355All0.000072
ORF1ab/nsp2166T166TacTacG2811355All0.000054
ORF1ab/nsp2166T166IaCtaTt974974B.1.4280.993878
ORF1ab/nsp2166T166TacTacA411444B.1.1.70.000368
ORF1ab/nsp2166T166TacTacC20444B.1.1.70.000018
ORF1ab/nsp2166T166TacTacG13444B.1.1.70.000012
ORF1ab/nsp2166T166TacTacG136291AY.40.000212
ORF1ab/nsp2166T166TacTacC129291AY.40.000201
ORF1ab/nsp2166T166TacTacA26291AY.40.00004
ORF1ab/nsp2166T166NaCtaAt268269All0.000051
ORF1ab/nsp2166T166NaCTaAC1269All0
ORF1ab/nsp2166T166IaCtaTt233233B.1.4110.862963
ORF1ab/nsp2166T166IaCtaTt215215AY.40.000335
ORF1ab/nsp2166T166IaCtaTt213213B.10.001951
ORF1ab/nsp2166T166TacTacA137145B.10.001255
ORF1ab/nsp2166T166TacTacC7145B.10.000064
ORF1ab/nsp2166T166TacTacG1145B.10.000009
ORF1ab/nsp2166T166IaCtaTt140140AY.330.009349
ORF1ab/nsp2166T166AActGct124124All0.000024
ORF1ab/nsp2166T166IaCtaTt109109AY.1030.000677
ORF1ab/nsp2166T166IaCtaTt9494B.1.617.20.000354
ORF1ab/nsp2166T166TacTacC8181B.1.1.5131
ORF1ab/nsp2166T166NaCtaAt7878AY.260.002208
ORF1ab/nsp2166T166IaCtaTt7878B.1.428.31
ORF1ab/nsp2166T166IaCtaTt7676AY.440.000463
ORF1ab/nsp2166T166IaCtaTt7575B.1.5250.008487
ORF1ab/nsp2166T166IaCtaTt7575B.1.5950.019572
ORF1ab/nsp2166T166IaCtaTt7474AY.250.000445
ORF1ab/nsp2166T166IaCtaTt7474B.1.4290.001741
ORF1ab/nsp2166T166IaCtaTt7272B.1.3110.019769
ORF1ab/nsp2166T166IaCtaTt6868B.1.5170.029035
ORF1ab/nsp2166T166NaCtaAt6060B.1.617.20.000226
ORF1ab/nsp2166T166IaCtaTt5858P.10.000914
ORF1ab/nsp2166T166IaCtaTt5555AY.430.000244
ORF1ab/nsp2166T166TacTacC2650B.1.617.20.000098
ORF1ab/nsp2166T166TacTacG2050B.1.617.20.000075
ORF1ab/nsp2166T166TacTacA450B.1.617.20.000015
ORF1ab/nsp2166T166IaCtaTt4949B.1.20.000431
ORF1ab/nsp2166T166TacTacA4646B.1.1.5190.001827
ORF1ab/nsp2166T166IaCtaTt3939B.1.4270.001969
ORF1ab/nsp2166T166IaCtaTt3737B.1.6131
ORF1ab/nsp2166T166IaCtaTt3434B.1.1770.000448
ORF1ab/nsp2166T166IaCtaTt3333AY.30.000328
ORF1ab/nsp2166T166TacTacG2732AY.430.00012
ORF1ab/nsp2166T166TacTacC432AY.430.000018
ORF1ab/nsp2166T166TacTacA132AY.430.000004
ORF1ab/nsp2166T166IaCtaTt3030B.1.428.21
ORF1ab/nsp2166T166IaCtaTt2929B.1.10.000526
ORF1ab/nsp2166T166IaCtaTt2929B.1.428.11
ORF1ab/nsp2166T166SActTct2328All0.000004
ORF1ab/nsp2166T166SaCtaGt428All0.000001
ORF1ab/nsp2166T166SAcTTcC128All0
ORF1ab/nsp2166T166IaCtaTt2828B.1.5260.000658
ORF1ab/nsp2166T166TacTacC2426B.1.20.000211
ORF1ab/nsp2166T166TacTacA226B.1.20.000018
ORF1ab/nsp2166T166NaCtaAt2525B.1.20.00022
ORF1ab/nsp2166T166NaCtaAt2424AY.40.000037
ORF1ab/nsp2166T166IaCtaTt2424AY.610.002515
ORF1ab/nsp2166T166IaCtaTt2323R.10.00207
ORF1ab/nsp2166T166IaCtaTt2222B.1.177.180.025522
ORF1ab/nsp2166T166AActGct2121AY.40.000033
ORF1ab/nsp2166T166NaCtaAt2021B.1.1.70.000018
ORF1ab/nsp2166T166NaCTaAC121B.1.1.70.000001
ORF1ab/nsp2166T166IaCtaTt2121B.1.2430.001461
ORF1ab/nsp2166T166IaCtaTt2020AY.930.005461
ORF1ab/nsp2166T166IaCtaTt2020B.1.3581
ORF1ab/nsp2166T166delACT---1919All0.000004
ORF1ab/nsp2166T166IaCtaTt1818AY.1000.000828
ORF1ab/nsp2166T166IaCtaTt1818B.1.1.390.009174
ORF1ab/nsp2166T166IaCtaTt1717AY.340.001648
ORF1ab/nsp2166T166IaCtaTt1616AY.1020.000424
ORF1ab/nsp2166T166TacTacC1316B.1.1770.000171
ORF1ab/nsp2166T166TacTacG316B.1.1770.00004
ORF1ab/nsp2166T166IaCtaTt1616B.1.2210.001137
ORF1ab/nsp2166T166IaCtaTt1616B.1.36.180.006723
ORF1ab/nsp2166T166TacTacA715AY.440.000043
ORF1ab/nsp2166T166TacTacC715AY.440.000043
ORF1ab/nsp2166T166TacTacG115AY.440.000006
ORF1ab/nsp2166T166IaCtaTt1515B0.001917
ORF1ab/nsp2166T166IaCtaTt1414AY.290.000221
ORF1ab/nsp2166T166TacTacG1414AY.4.20.000304
ORF1ab/nsp2166T166IaCtaTt1414AY.740.001619
ORF1ab/nsp2166T166IaCtaTt1414B.1.1.5190.000556
ORF1ab/nsp2166T166AActGct1414B.1.1.70.000013
ORF1ab/nsp2166T166IaCtaTt1414B.1.1600.000437
ORF1ab/nsp2166T166IaCtaTt1313AY.660.013904
ORF1ab/nsp2166T166IaCtaTt1212AY.1180.000752
ORF1ab/nsp2166T166TacTacA711AY.1030.000043
ORF1ab/nsp2166T166TacTacC411AY.1030.000025
ORF1ab/nsp2166T166TacTacG911AY.50.000186
ORF1ab/nsp2166T166TacTacA211AY.50.000041
ORF1ab/nsp2166T166IaCtaTt1111B.1.2290.106796
ORF1ab/nsp2166T166IaCtaTt1111P.1.140.000526
ORF1ab/nsp2166T166IaCtaTt1010AY.9.20.000367
ORF1ab/nsp2166T166IaCtaTt1010B.1.2580.000665
ORF1ab/nsp2166T166AActGct99AY.1030.000056
ORF1ab/nsp2166T166IaCtaTt99AY.1190.000318
ORF1ab/nsp2166T166IaCtaTt99AY.200.00035
ORF1ab/nsp2166T166AActGct99AY.330.000601
ORF1ab/nsp2166T166TacTacC79AY.99.20.000645
ORF1ab/nsp2166T166TacTacA29AY.99.20.000184
ORF1ab/nsp2166T166IaCtaTt88AY.1200.000297
ORF1ab/nsp2166T166AActGct88AY.30.00008
ORF1ab/nsp2166T166IaCtaTt88AY.470.000249
ORF1ab/nsp2166T166IaCtaTt88AY.750.000448
ORF1ab/nsp2166T166AActGct88B.1.1.2220.001632
ORF1ab/nsp2166T166IaCtaTt88P.1.100.002156
ORF1ab/nsp2166T166TacTacC77AY.250.000042
ORF1ab/nsp2166T166IaCtaTt77AY.260.000198
ORF1ab/nsp2166T166IaCtaTt77AY.590.003708
ORF1ab/nsp2166T166TacTacG77AY.60.000288
ORF1ab/nsp2166T166TacTacG77B.1.177.830.01037
ORF1ab/nsp2166T166TacTacA67B.1.5260.000141
ORF1ab/nsp2166T166TacTacC17B.1.5260.000024
ORF1ab/nsp2166T166IaCtaTt66AY.1170.000507
ORF1ab/nsp2166T166IaCtaTt66AY.450.00073
ORF1ab/nsp2166T166IaCtaTt66AY.98.10.000291
ORF1ab/nsp2166T166IaCtaTt66B.1.1.1480.052632
ORF1ab/nsp2166T166IaCtaTt66B.1.160.260.014528
ORF1ab/nsp2166T166SActTct46B.1.617.20.000015
ORF1ab/nsp2166T166SaCtaGt26B.1.617.20.000008
ORF1ab/nsp2166T166IaCtaTt55AY.1090.003698
ORF1ab/nsp2166T166TacTacG45AY.200.000155
ORF1ab/nsp2166T166TacTacA15AY.200.000039
ORF1ab/nsp2166T166TacTacC55AY.290.000079
ORF1ab/nsp2166T166IaCtaTt55AY.300.001979
ORF1ab/nsp2166T166IaCtaTt55AY.390.000124
ORF1ab/nsp2166T166IaCtaTt55AY.4.50.000537
ORF1ab/nsp2166T166NaCtaAt55AY.460.00052
ORF1ab/nsp2166T166IaCtaTt55AY.460.00052
ORF1ab/nsp2166T166delACT---55B.1.1.330.002104
ORF1ab/nsp2166T166IaCtaTt55B.1.1.370.000964
ORF1ab/nsp2166T166TacTacA55B.1.177.40.001055
ORF1ab/nsp2166T166IaCtaTt55B.1.258.170.00052
ORF1ab/nsp2166T166NaCtaAt55C.360.004554
ORF1ab/nsp2166T166IaCtaTt55P.20.000933
ORF1ab/nsp2166T166IaCtaTt55Q.60.033113
ORF1ab/nsp2166T166del1Act-ct24All0
ORF1ab/nsp2166T166del1acTac-24All0
ORF1ab/nsp2166T166AActGct44AY.260.000113
ORF1ab/nsp2166T166TacTacC44AY.280.007561
ORF1ab/nsp2166T166NaCtaAt44AY.430.000018
ORF1ab/nsp2166T166AActGct44AY.440.000024
ORF1ab/nsp2166T166TacTacG44AY.7.10.000451
ORF1ab/nsp2166T166TacTacC34AY.750.000168
ORF1ab/nsp2166T166TacTacG14AY.750.000056
ORF1ab/nsp2166T166TacTacA44B.1.10.000073
ORF1ab/nsp2166T166IaCtaTt44B.1.1.4340.001394
ORF1ab/nsp2166T166IaCtaTt44B.1.177.210.000306
ORF1ab/nsp2166T166IaCtaTt44B.1.2410.003247
ORF1ab/nsp2166T166IaCtaTt44B.1.36.290.002069
ORF1ab/nsp2166T166NaCtaAt44B.1.5610.001588
ORF1ab/nsp2166T166AActGct44B.1.617.20.000015
ORF1ab/nsp2166T166IaCtaTt44B.1.6370.000292
ORF1ab/nsp2166T166IaCtaTt44C.300.006908
ORF1ab/nsp2166T166SActTct33AY.1020.00008
ORF1ab/nsp2166T166SActTct33AY.1090.002219
ORF1ab/nsp2166T166TacTacG33AY.1110.000549
ORF1ab/nsp2166T166NaCtaAt33AY.1130.000427
ORF1ab/nsp2166T166TacTacG23AY.1200.000074
ORF1ab/nsp2166T166TacTacC13AY.1200.000037
ORF1ab/nsp2166T166NaCtaAt33AY.200.000117
ORF1ab/nsp2166T166IaCtaTt33AY.230.000209
ORF1ab/nsp2166T166IaCtaTt33AY.3.10.000256
ORF1ab/nsp2166T166TacTacA33AY.370.000948
ORF1ab/nsp2166T166TacTacG33AY.4.2.10.000447
ORF1ab/nsp2166T166TacTacA23AY.460.000208
ORF1ab/nsp2166T166TacTacG13AY.460.000104
ORF1ab/nsp2166T166IaCtaTt33AY.50.000062
ORF1ab/nsp2166T166IaCtaTt33AY.60.000123
ORF1ab/nsp2166T166TacTacG33AY.90.000203
ORF1ab/nsp2166T166TacTacG33AY.9.20.00011
ORF1ab/nsp2166T166IaCtaTt33AY.99.20.000276
ORF1ab/nsp2166T166SAcTTcC13B.10.000009
ORF1ab/nsp2166T166SaCtaGt13B.10.000009
ORF1ab/nsp2166T166SActTct13B.10.000009
ORF1ab/nsp2166T166AActGct33B.1.10.000054
ORF1ab/nsp2166T166IaCtaTt33B.1.1.2140.000166
ORF1ab/nsp2166T166IaCtaTt33B.1.1.2190.015
ORF1ab/nsp2166T166delACT---33B.1.1.3480.002389
ORF1ab/nsp2166T166delACT---33B.1.1.70.000003
ORF1ab/nsp2166T166IaCtaTt33B.1.1570.008955
ORF1ab/nsp2166T166IaCtaTt33B.1.177.400.015464
ORF1ab/nsp2166T166IaCtaTt33B.1.2340.000396
ORF1ab/nsp2166T166IaCtaTt33B.1.2360.00616
ORF1ab/nsp2166T166IaCtaTt33B.1.3500.008798
ORF1ab/nsp2166T166IaCtaTt33B.1.360.000438
ORF1ab/nsp2166T166IaCtaTt23B.1.36.80.002
ORF1ab/nsp2166T166IaCTaTA13B.1.36.80.001
ORF1ab/nsp2166T166IaCtaTt33B.1.4080.01107
ORF1ab/nsp2166T166NaCtaAt33B.1.4290.000071
ORF1ab/nsp2166T166IaCtaTt33B.1.5770.002062
ORF1ab/nsp2166T166TacTacA33B.1.6280.001057
ORF1ab/nsp2166T166AActGct33C.36.30.001702
ORF1ab/nsp2166T166TacTacA33C.370.000348
ORF1ab/nsp2166T166IaCtaTt33C.370.000348
ORF1ab/nsp2166T166IaCtaTt33D.20.000225
ORF1ab/nsp2166T166IaCtaTt33P.1.150.000697
ORF1ab/nsp2166T166NaCtaAt33P.1.170.000485
ORF1ab/nsp2166T166TacTacC23P.20.000373
ORF1ab/nsp2166T166TacTacG13P.20.000187
ORF1ab/nsp2166T166AActGct22AA.10.014493
ORF1ab/nsp2166T166PActCct22All0
ORF1ab/nsp2166T166AActGct22AY.1000.000092
ORF1ab/nsp2166T166NaCtaAt22AY.1020.000053
ORF1ab/nsp2166T166NaCtaAt22AY.1030.000012
ORF1ab/nsp2166T166TacTacC22AY.1130.000285
ORF1ab/nsp2166T166TacTacC22AY.1180.000125
ORF1ab/nsp2166T166TacTacG22AY.120.2.10.000997
ORF1ab/nsp2166T166IaCtaTt22AY.160.000759
ORF1ab/nsp2166T166TacTacA22AY.260.000057
ORF1ab/nsp2166T166TacTacC22AY.270.000129
ORF1ab/nsp2166T166AActGct22AY.290.000032
ORF1ab/nsp2166T166IaCtaTt22AY.360.000296
ORF1ab/nsp2166T166SaCtaGt12AY.40.000002
ORF1ab/nsp2166T166SActTct12AY.40.000002
ORF1ab/nsp2166T166IaCtaTt22AY.4.20.000043
ORF1ab/nsp2166T166TacTacG22AY.4.40.000818
ORF1ab/nsp2166T166TacTacA12AY.4.50.000107
ORF1ab/nsp2166T166TacTacG12AY.4.50.000107
ORF1ab/nsp2166T166TacTacA22AY.420.00008
ORF1ab/nsp2166T166NaCtaAt22AY.420.00008
ORF1ab/nsp2166T166SActTct22AY.440.000012
ORF1ab/nsp2166T166NaCtaAt22AY.440.000012
ORF1ab/nsp2166T166AActGct22AY.450.000243
ORF1ab/nsp2166T166TacTacC12AY.450.000122
ORF1ab/nsp2166T166TacTacA12AY.450.000122
ORF1ab/nsp2166T166IaCtaTt22AY.46.20.001271
ORF1ab/nsp2166T166IaCtaTt22AY.46.40.000329
ORF1ab/nsp2166T166TacTacG22AY.46.60.000144
ORF1ab/nsp2166T166TacTacC22AY.470.000062
ORF1ab/nsp2166T166AActGct22AY.620.000871
ORF1ab/nsp2166T166NaCtaAt22AY.70.000392
ORF1ab/nsp2166T166IaCtaTt22AY.7.10.000225
ORF1ab/nsp2166T166TacTacC22AY.75.10.000361
ORF1ab/nsp2166T166IaCtaTt22AY.840.000875
ORF1ab/nsp2166T166IaCtaTt22AY.860.00166
ORF1ab/nsp2166T166TacTacC22AY.880.001768
ORF1ab/nsp2166T166TacTacA22AY.9.10.000167
ORF1ab/nsp2166T166TacTacA22AY.910.001461
ORF1ab/nsp2166T166IaCtaTt22AY.920.000575
ORF1ab/nsp2166T166IaCtaTt22AY.940.000885
ORF1ab/nsp2166T166NaCtaAt22B.10.000018
ORF1ab/nsp2166T166NaCtaAt22B.1.10.000036
ORF1ab/nsp2166T166IaCtaTt22B.1.1.1570.001826
ORF1ab/nsp2166T166IaCtaTt22B.1.1.1610.007067
ORF1ab/nsp2166T166IaCtaTt22B.1.1.3110.000716
ORF1ab/nsp2166T166IaCtaTt22B.1.1.4130.013793
ORF1ab/nsp2166T166NaCtaAt22B.1.1600.000062
ORF1ab/nsp2166T166NaCtaAt22B.1.177.600.000437
ORF1ab/nsp2166T166IaCtaTt22B.1.177.860.000367
ORF1ab/nsp2166T166IaCtaTt22B.1.3490.00143
ORF1ab/nsp2166T166IaCtaTt22B.1.3510.000059
ORF1ab/nsp2166T166IaCtaTt22B.1.36.100.009569
ORF1ab/nsp2166T166TacTacC22B.1.5070.022472
ORF1ab/nsp2166T166IaCtaTt22B.1.5510.002581
ORF1ab/nsp2166T166TacTacA12B.1.6210.000089
ORF1ab/nsp2166T166TacTacC12B.1.6210.000089
ORF1ab/nsp2166T166delACT---22N.60.014184
ORF1ab/nsp2166T166AActGct22P.10.000032
ORF1ab/nsp2166T166TacTacC12P.10.000016
ORF1ab/nsp2166T166TacTacA12P.10.000016
ORF1ab/nsp2166T166AActGct22P.1.140.000096
ORF1ab/nsp2166T166IaCtaTt22P.1.70.000639
ORF1ab/nsp2166T166delACT---22P.20.000373
ORF1ab/nsp2166T166IaCtaTt22Q.10.000253
ORF1ab/nsp2166T166IaCtaTt22Q.80.00033
ORF1ab/nsp2166T166IaCtaTt11A.10.000282
ORF1ab/nsp2166T166IaCtaTt11A.2.50.000499
ORF1ab/nsp2166T166IaCtaTt11A.290.005319
ORF1ab/nsp2166T166MaCTaTG11All0
ORF1ab/nsp2166T166RACtCGt11All0
ORF1ab/nsp2166T166IaCtaTt11AY.100.00053
ORF1ab/nsp2166T166TacTacC11AY.1000.000046
ORF1ab/nsp2166T166NaCtaAt11AY.1000.000046
ORF1ab/nsp2166T166del1acTac-11AY.1000.000046
ORF1ab/nsp2166T166AActGct11AY.1020.000027
ORF1ab/nsp2166T166TacTacC11AY.1050.000643
ORF1ab/nsp2166T166IaCtaTt11AY.1060.000335
ORF1ab/nsp2166T166NaCtaAt11AY.1080.001103
ORF1ab/nsp2166T166IaCtaTt11AY.1140.000231
ORF1ab/nsp2166T166AActGct11AY.1200.000037
ORF1ab/nsp2166T166IaCtaTt11AY.1210.000135
ORF1ab/nsp2166T166IaCtaTt11AY.140.000088
ORF1ab/nsp2166T166IaCtaTt11AY.16.10.00047
ORF1ab/nsp2166T166TacTacC11AY.16.10.00047
ORF1ab/nsp2166T166IaCtaTt11AY.180.010101
ORF1ab/nsp2166T166TacTacA11AY.240.000431
ORF1ab/nsp2166T166IaCtaTt11AY.240.000431
ORF1ab/nsp2166T166AActGct11AY.250.000006
ORF1ab/nsp2166T166SActTct11AY.30.00001
ORF1ab/nsp2166T166TacTacA11AY.3.10.000085
ORF1ab/nsp2166T166NaCtaAt11AY.300.000396
ORF1ab/nsp2166T166IaCtaTt11AY.34.10.00051
ORF1ab/nsp2166T166IaCtaTt11AY.350.000233
ORF1ab/nsp2166T166SActTct11AY.350.000233
ORF1ab/nsp2166T166TacTacG11AY.360.000148
ORF1ab/nsp2166T166IaCtaTt11AY.380.000499
ORF1ab/nsp2166T166NaCtaAt11AY.390.000025
ORF1ab/nsp2166T166TacTacA11AY.390.000025
ORF1ab/nsp2166T166SActTct11AY.390.000025
ORF1ab/nsp2166T166IaCtaTt11AY.39.10.00004
ORF1ab/nsp2166T166TacTacC11AY.39.10.00004
ORF1ab/nsp2166T166delACT---11AY.40.000002
ORF1ab/nsp2166T166IaCtaTt11AY.4.40.000409
ORF1ab/nsp2166T166AActGct11AY.4.50.000107
ORF1ab/nsp2166T166IaCtaTt11AY.400.000964
ORF1ab/nsp2166T166AActGct11AY.400.000964
ORF1ab/nsp2166T166TacTacG11AY.410.000294
ORF1ab/nsp2166T166IaCtaTt11AY.420.00004
ORF1ab/nsp2166T166AActGct11AY.420.00004
ORF1ab/nsp2166T166SActTct11AY.430.000004
ORF1ab/nsp2166T166AActGct11AY.430.000004
ORF1ab/nsp2166T166delACT---11AY.440.000006
ORF1ab/nsp2166T166NaCtaAt11AY.450.000122
ORF1ab/nsp2166T166IaCtaTt11AY.46.60.000072
ORF1ab/nsp2166T166AActGct11AY.470.000031
ORF1ab/nsp2166T166AActGct11AY.5.40.000277
ORF1ab/nsp2166T166IaCtaTt11AY.5.40.000277
ORF1ab/nsp2166T166IaCtaTt11AY.510.000909
ORF1ab/nsp2166T166IaCtaTt11AY.520.000814
ORF1ab/nsp2166T166IaCtaTt11AY.530.000288
ORF1ab/nsp2166T166IaCtaTt11AY.540.000095
ORF1ab/nsp2166T166IaCtaTt11AY.550.000917
ORF1ab/nsp2166T166AActGct11AY.60.000041
ORF1ab/nsp2166T166IaCtaTt11AY.630.000387
ORF1ab/nsp2166T166AActGct11AY.680.000274
ORF1ab/nsp2166T166TacTacG11AY.70.000196
ORF1ab/nsp2166T166IaCtaTt11AY.70.000196
ORF1ab/nsp2166T166IaCtaTt11AY.700.000209
ORF1ab/nsp2166T166IaCtaTt11AY.710.000475
ORF1ab/nsp2166T166SActTct11AY.720.001361
ORF1ab/nsp2166T166delACT---11AY.750.000056
ORF1ab/nsp2166T166IaCtaTt11AY.75.10.00018
ORF1ab/nsp2166T166IaCtaTt11AY.770.001127
ORF1ab/nsp2166T166IaCtaTt11AY.790.001211
ORF1ab/nsp2166T166IaCtaTt11AY.80.000606
ORF1ab/nsp2166T166IaCtaTt11AY.870.000833
ORF1ab/nsp2166T166IaCtaTt11AY.880.000884
ORF1ab/nsp2166T166SActTct11AY.880.000884
ORF1ab/nsp2166T166IaCtaTt11AY.9.10.000084
ORF1ab/nsp2166T166AActGct11AY.9.20.000037
ORF1ab/nsp2166T166TacTacG11AY.900.000684
ORF1ab/nsp2166T166IaCtaTt11AY.910.00073
ORF1ab/nsp2166T166TacTacA11AY.930.000273
ORF1ab/nsp2166T166IaCtaTt11AY.980.000079
ORF1ab/nsp2166T166AActGct11AY.980.000079
ORF1ab/nsp2166T166NaCtaAt11AY.99.20.000092
ORF1ab/nsp2166T166TacTacA11B0.000128
ORF1ab/nsp2166T166NaCtaAt11B0.000128
ORF1ab/nsp2166T166PActCct11B.10.000009
ORF1ab/nsp2166T166RACtCGt11B.10.000009
ORF1ab/nsp2166T166PActCct11B.1.10.000018
ORF1ab/nsp2166T166IaCtaTt11B.1.1.1410.002012
ORF1ab/nsp2166T166TacTacA11B.1.1.1570.000913
ORF1ab/nsp2166T166IaCtaTt11B.1.1.1760.000439
ORF1ab/nsp2166T166IaCtaTt11B.1.1.2070.001182
ORF1ab/nsp2166T166TacTacC11B.1.1.2160.00089
ORF1ab/nsp2166T166IaCtaTt11B.1.1.250.000569
ORF1ab/nsp2166T166IaCtaTt11B.1.1.2770.000759
ORF1ab/nsp2166T166IaCtaTt11B.1.1.280.000311
ORF1ab/nsp2166T166IaCtaTt11B.1.1.2980.000862
ORF1ab/nsp2166T166IaCtaTt11B.1.1.3160.000925
ORF1ab/nsp2166T166IaCtaTt11B.1.1.3170.000412
ORF1ab/nsp2166T166TacTacA11B.1.1.3170.000412
ORF1ab/nsp2166T166IaCtaTt11B.1.1.3180.000302
ORF1ab/nsp2166T166IaCtaTt11B.1.1.330.000421
ORF1ab/nsp2166T166TacTacG11B.1.1.390.00051
ORF1ab/nsp2166T166MaCTaTG11B.1.1.390.00051
ORF1ab/nsp2166T166IaCtaTt11B.1.1.4110.014706
ORF1ab/nsp2166T166IaCtaTt11B.1.1.5070.008696
ORF1ab/nsp2166T166AActGct11B.1.1.5190.00004
ORF1ab/nsp2166T166IaCtaTt11B.1.1.5260.003546
ORF1ab/nsp2166T166IaCtaTt11B.1.1.630.000386
ORF1ab/nsp2166T166SActTct11B.1.1.630.000386
ORF1ab/nsp2166T166SActTct11B.1.1.70.000001
ORF1ab/nsp2166T166IaCtaTt11B.1.1.700.000341
ORF1ab/nsp2166T166TacTacC11B.1.110.30.000718
ORF1ab/nsp2166T166IaCtaTt11B.1.1390.000733
ORF1ab/nsp2166T166IaCtaTt11B.1.1470.000756
ORF1ab/nsp2166T166IaCtaTt11B.1.1580.02381
ORF1ab/nsp2166T166TacTacC11B.1.1600.000031
ORF1ab/nsp2166T166IaCtaTt11B.1.160.150.00495
ORF1ab/nsp2166T166AActGct11B.1.1770.000013
ORF1ab/nsp2166T166IaCtaTt11B.1.177.120.000152
ORF1ab/nsp2166T166IaCtaTt11B.1.177.170.000821
ORF1ab/nsp2166T166IaCtaTt11B.1.177.430.001477
ORF1ab/nsp2166T166TacTacG11B.1.177.440.000519
ORF1ab/nsp2166T166TacTacC11B.1.177.540.000606
ORF1ab/nsp2166T166TacTacA11B.1.177.60.000977
ORF1ab/nsp2166T166IaCtaTt11B.1.177.70.000165
ORF1ab/nsp2166T166IaCtaTt11B.1.177.730.000566
ORF1ab/nsp2166T166NaCtaAt11B.1.177.730.000566
ORF1ab/nsp2166T166TacTacC11B.1.177.810.000189
ORF1ab/nsp2166T166TacTacG11B.1.177.840.006667
ORF1ab/nsp2166T166IaCtaTt11B.1.1990.004132
ORF1ab/nsp2166T166del1Act-ct11B.1.20.000009
ORF1ab/nsp2166T166AActGct11B.1.20.000009
ORF1ab/nsp2166T166TacTacG11B.1.2210.000071
ORF1ab/nsp2166T166IaCtaTt11B.1.221.20.004016
ORF1ab/nsp2166T166TacTacA11B.1.2430.00007
ORF1ab/nsp2166T166IaCtaTt11B.1.258.140.00098
ORF1ab/nsp2166T166IaCtaTt11B.1.258.160.001637
ORF1ab/nsp2166T166TacTacA11B.1.258.170.000104
ORF1ab/nsp2166T166IaCtaTt11B.1.258.220.002667
ORF1ab/nsp2166T166IaCtaTt11B.1.2630.047619
ORF1ab/nsp2166T166TacTacC11B.1.2810.021739
ORF1ab/nsp2166T166TacTacG11B.1.3320.003497
ORF1ab/nsp2166T166NaCtaAt11B.1.3490.000715
ORF1ab/nsp2166T166TacTacG11B.1.3510.00003
ORF1ab/nsp2166T166AActGct11B.1.3510.00003
ORF1ab/nsp2166T166AActGct11B.1.351.30.000876
ORF1ab/nsp2166T166IaCtaTt11B.1.351.30.000876
ORF1ab/nsp2166T166IaCtaTt11B.1.36.160.001425
ORF1ab/nsp2166T166AActGct11B.1.36.290.000517
ORF1ab/nsp2166T166NaCtaAt11B.1.36.290.000517
ORF1ab/nsp2166T166IaCtaTt11B.1.36.360.000602
ORF1ab/nsp2166T166IaCtaTt11B.1.3620.001541
ORF1ab/nsp2166T166IaCtaTt11B.1.362.20.004717
ORF1ab/nsp2166T166IaCtaTt11B.1.3660.004878
ORF1ab/nsp2166T166IaCtaTt11B.1.3690.000285
ORF1ab/nsp2166T166IaCtaTt11B.1.3750.00082
ORF1ab/nsp2166T166IaCtaTt11B.1.3970.004854
ORF1ab/nsp2166T166IaCtaTt11B.1.4000.000429
ORF1ab/nsp2166T166AActGct11B.1.4270.00005
ORF1ab/nsp2166T166AActGct11B.1.4290.000024
ORF1ab/nsp2166T166delACT---11B.1.4290.000024
ORF1ab/nsp2166T166TacTacA11B.1.466.20.000391
ORF1ab/nsp2166T166IaCtaTt11B.1.5090.000866
ORF1ab/nsp2166T166IaCtaTt11B.1.5210.004975
ORF1ab/nsp2166T166IaCtaTt11B.1.5240.001406
ORF1ab/nsp2166T166NaCtaAt11B.1.5250.000113
ORF1ab/nsp2166T166AActGct11B.1.5250.000113
ORF1ab/nsp2166T166IaCtaTt11B.1.5330.009615
ORF1ab/nsp2166T166IaCtaTt11B.1.5610.000397
ORF1ab/nsp2166T166TacTacG11B.1.5680.001111
ORF1ab/nsp2166T166del1Act-ct11B.1.5760.000907
ORF1ab/nsp2166T166IaCtaTt11B.1.5820.000491
ORF1ab/nsp2166T166IaCtaTt11B.1.5960.000087
ORF1ab/nsp2166T166TacTacC11B.1.5960.000087
ORF1ab/nsp2166T166IaCtaTt11B.1.6090.000479
ORF1ab/nsp2166T166TacTacA11B.1.617.10.000129
ORF1ab/nsp2166T166IaCtaTt11B.1.6190.000871
ORF1ab/nsp2166T166IaCtaTt11B.1.619.10.000641
ORF1ab/nsp2166T166IaCtaTt11B.1.6200.000946
ORF1ab/nsp2166T166NaCtaAt11B.1.6210.000089
ORF1ab/nsp2166T166AActGct11B.1.6210.000089
ORF1ab/nsp2166T166IaCtaTt11B.1.6270.00202
ORF1ab/nsp2166T166IaCtaTt11B.1.6310.003367
ORF1ab/nsp2166T166IaCtaTt11B.350.007812
ORF1ab/nsp2166T166IaCtaTt11B.6.60.000889
ORF1ab/nsp2166T166IaCtaTt11C.160.00106
ORF1ab/nsp2166T166IaCtaTt11C.360.000911
ORF1ab/nsp2166T166del1acTac-11C.360.000911
ORF1ab/nsp2166T166NaCtaAt11C.36.10.004149
ORF1ab/nsp2166T166IaCtaTt11C.37.10.002618
ORF1ab/nsp2166T166TacTacC11L.10.001905
ORF1ab/nsp2166T166IaCtaTt11P.1.10.000318
ORF1ab/nsp2166T166SActTct11P.1.10.000318
ORF1ab/nsp2166T166IaCtaTt11P.1.120.000484
ORF1ab/nsp2166T166TacTacA11P.1.120.000484
ORF1ab/nsp2166T166IaCtaTt11P.1.160.000374
ORF1ab/nsp2166T166TacTacC11P.1.170.000162
ORF1ab/nsp2166T166IaCtaTt11P.1.170.000162
ORF1ab/nsp2166T166TacTacA11P.1.70.000319
ORF1ab/nsp2166T166TacTacA11Q.10.000126