CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 16 & Codon = Cac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp216Y16HY196HnonsynTacCac9849841851-853

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp216Y16HTacCac984984All0.000188
ORF1ab/nsp216Y16HTacCac295295AY.40.000459
ORF1ab/nsp216Y16HTacCac139139B.1.1.70.000124
ORF1ab/nsp216Y16HTacCac7878AY.440.000475
ORF1ab/nsp216Y16HTacCac6666B.1.617.20.000249
ORF1ab/nsp216Y16HTacCac3030AY.60.001234
ORF1ab/nsp216Y16HTacCac2323AY.1190.000812
ORF1ab/nsp216Y16HTacCac1919AY.1020.000504
ORF1ab/nsp216Y16HTacCac1919AY.390.00047
ORF1ab/nsp216Y16HTacCac1818B.1.160.140.038136
ORF1ab/nsp216Y16HTacCac1818P.10.000284
ORF1ab/nsp216Y16HTacCac1717AY.30.000169
ORF1ab/nsp216Y16HTacCac1717C.36.30.009643
ORF1ab/nsp216Y16HTacCac1616AY.98.10.000775
ORF1ab/nsp216Y16HTacCac1515AY.1200.000558
ORF1ab/nsp216Y16HTacCac1515AY.200.000583
ORF1ab/nsp216Y16HTacCac1313AY.430.000058
ORF1ab/nsp216Y16HTacCac1313B.10.000119
ORF1ab/nsp216Y16HTacCac1212AY.1030.000075
ORF1ab/nsp216Y16HTacCac1010B.1.177.350.006911
ORF1ab/nsp216Y16HTacCac99B.1.10.000163
ORF1ab/nsp216Y16HTacCac88AY.1000.000368
ORF1ab/nsp216Y16HTacCac88B.1.617.10.001032
ORF1ab/nsp216Y16HTacCac66AY.1180.000376
ORF1ab/nsp216Y16HTacCac66B.1.1770.000079
ORF1ab/nsp216Y16HTacCac55AY.39.10.000198
ORF1ab/nsp216Y16HTacCac55AY.9.10.000419
ORF1ab/nsp216Y16HTacCac55AY.990.005247
ORF1ab/nsp216Y16HTacCac44AY.230.000279
ORF1ab/nsp216Y16HTacCac44AY.250.000024
ORF1ab/nsp216Y16HTacCac44AY.75.10.000721
ORF1ab/nsp216Y16HTacCac33AY.140.000264
ORF1ab/nsp216Y16HTacCac33AY.4.20.000065
ORF1ab/nsp216Y16HTacCac33AY.610.000314
ORF1ab/nsp216Y16HTacCac33B.1.1.5190.000119
ORF1ab/nsp216Y16HTacCac33B.1.1600.000094
ORF1ab/nsp216Y16HTacCac33B.1.1820.021739
ORF1ab/nsp216Y16HTacCac33B.1.20.000026
ORF1ab/nsp216Y16HTacCac33B.1.4270.000151
ORF1ab/nsp216Y16HTacCac33B.1.466.20.001174
ORF1ab/nsp216Y16HTacCac22AY.260.000057
ORF1ab/nsp216Y16HTacCac22AY.3.10.000171
ORF1ab/nsp216Y16HTacCac22AY.360.000296
ORF1ab/nsp216Y16HTacCac22AY.450.000243
ORF1ab/nsp216Y16HTacCac22AY.46.40.000329
ORF1ab/nsp216Y16HTacCac22AY.470.000062
ORF1ab/nsp216Y16HTacCac22AY.50.000041
ORF1ab/nsp216Y16HTacCac22AY.750.000112
ORF1ab/nsp216Y16HTacCac22B.1.1.10.000653
ORF1ab/nsp216Y16HTacCac22B.1.2430.000139
ORF1ab/nsp216Y16HTacCac22B.1.4290.000047
ORF1ab/nsp216Y16HTacCac22B.1.6210.000177
ORF1ab/nsp216Y16HTacCac110.055556
ORF1ab/nsp216Y16HTacCac11A.20.000662
ORF1ab/nsp216Y16HTacCac11AY.1080.001103
ORF1ab/nsp216Y16HTacCac11AY.130.000161
ORF1ab/nsp216Y16HTacCac11AY.240.000431
ORF1ab/nsp216Y16HTacCac11AY.290.000016
ORF1ab/nsp216Y16HTacCac11AY.300.000396
ORF1ab/nsp216Y16HTacCac11AY.330.000067
ORF1ab/nsp216Y16HTacCac11AY.34.10.00051
ORF1ab/nsp216Y16HTacCac11AY.4.40.000409
ORF1ab/nsp216Y16HTacCac11AY.4.50.000107
ORF1ab/nsp216Y16HTacCac11AY.420.00004
ORF1ab/nsp216Y16HTacCac11AY.680.000274
ORF1ab/nsp216Y16HTacCac11AY.690.000187
ORF1ab/nsp216Y16HTacCac11AY.810.001992
ORF1ab/nsp216Y16HTacCac11AY.9.20.000037
ORF1ab/nsp216Y16HTacCac11AY.910.00073
ORF1ab/nsp216Y16HTacCac11B.1.1.1470.090909
ORF1ab/nsp216Y16HTacCac11B.1.1.280.000311
ORF1ab/nsp216Y16HTacCac11B.1.1.3690.000446
ORF1ab/nsp216Y16HTacCac11B.1.177.120.000152
ORF1ab/nsp216Y16HTacCac11B.1.177.180.00116
ORF1ab/nsp216Y16HTacCac11B.1.177.560.000668
ORF1ab/nsp216Y16HTacCac11B.1.177.690.001484
ORF1ab/nsp216Y16HTacCac11B.1.2210.000071
ORF1ab/nsp216Y16HTacCac11B.1.2400.000216
ORF1ab/nsp216Y16HTacCac11B.1.3110.000275
ORF1ab/nsp216Y16HTacCac11B.1.3510.00003
ORF1ab/nsp216Y16HTacCac11B.1.36.170.000494
ORF1ab/nsp216Y16HTacCac11B.1.5260.000024
ORF1ab/nsp216Y16HTacCac11B.1.5270.003704
ORF1ab/nsp216Y16HTacCac11B.1.5960.000087
ORF1ab/nsp216Y16HTacCac11C.230.005814
ORF1ab/nsp216Y16HTacCac11D.20.000075
ORF1ab/nsp216Y16HTacCac11P.20.000187
ORF1ab/nsp216Y16HTacCac11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.