CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 16 & Codon = Aac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp216Y16NY196NnonsynTacAac1331331851-853

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp216Y16NTacAac133133All0.000025
ORF1ab/nsp216Y16NTacAac6565B.1.1.4200.065392
ORF1ab/nsp216Y16NTacAac1616B.1.10.00029
ORF1ab/nsp216Y16NTacAac1313B.1.3490.009292
ORF1ab/nsp216Y16NTacAac66B.10.000055
ORF1ab/nsp216Y16NTacAac33AY.250.000018
ORF1ab/nsp216Y16NTacAac33AY.440.000018
ORF1ab/nsp216Y16NTacAac33AY.50.000062
ORF1ab/nsp216Y16NTacAac33B.1.4700.004213
ORF1ab/nsp216Y16NTacAac22AY.390.000049
ORF1ab/nsp216Y16NTacAac22B.1.1.3320.0625
ORF1ab/nsp216Y16NTacAac22B.1.1.70.000002
ORF1ab/nsp216Y16NTacAac22B.1.3890.002004
ORF1ab/nsp216Y16NTacAac22B.1.617.20.000008
ORF1ab/nsp216Y16NTacAac22P.1.140.000096
ORF1ab/nsp216Y16NTacAac11AY.380.000499
ORF1ab/nsp216Y16NTacAac11AY.40.000002
ORF1ab/nsp216Y16NTacAac11AY.4.50.000107
ORF1ab/nsp216Y16NTacAac11AY.750.000056
ORF1ab/nsp216Y16NTacAac11B.1.1.560.017857
ORF1ab/nsp216Y16NTacAac11B.1.1770.000013
ORF1ab/nsp216Y16NTacAac11B.1.177.800.001912
ORF1ab/nsp216Y16NTacAac11B.1.2340.000132
ORF1ab/nsp216Y16NTacAac11B.1.6020.006536

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.