CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 150

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2150S150SS330SsyntcAtcG173316840.9717251253-1255
ORF1ab/nsp2150S150SS330SsyntcAtcT1733350.02019621253-1255
ORF1ab/nsp2150S150SS330SsyntcAtcC1733140.008078481253-1255
ORF1ab/nsp2150S150LS330LnonsyntCatTa48248211253-1255
ORF1ab/nsp2150S150AS330AnonsynTcaGca66510.7727271253-1255
ORF1ab/nsp2150S150AS330AnonsynTcAGcT66150.2272731253-1255
ORF1ab/nsp2150S150TS330TnonsynTcaAca52490.9423081253-1255
ORF1ab/nsp2150S150TS330TnonsynTcAAcT5220.03846151253-1255
ORF1ab/nsp2150S150TS330TnonsynTcAAcG5210.01923081253-1255
ORF1ab/nsp2150S150delS330deldelTCA---232311253-1255
ORF1ab/nsp2150S150XS330XnonsyntCatAa970.7777781253-1255
ORF1ab/nsp2150S150XS330XnonsyntCAtAG910.1111111253-1255
ORF1ab/nsp2150S150XS330XnonsyntCatGa910.1111111253-1255
ORF1ab/nsp2150S150PS330PnonsynTcaCca750.7142861253-1255
ORF1ab/nsp2150S150PS330PnonsynTcACcG710.1428571253-1255
ORF1ab/nsp2150S150PS330PnonsynTcACcT710.1428571253-1255
ORF1ab/nsp2150S150QS330QnonsynTCaCAa2211253-1255
ORF1ab/nsp2150S150WS330WnonsyntCAtGG2211253-1255
ORF1ab/nsp2150S150FS330FnonsyntCAtTC210.51253-1255
ORF1ab/nsp2150S150RS330RnonsynTCAAGG210.51253-1255
ORF1ab/nsp2150S150RS330RnonsynTCaAGa210.51253-1255
ORF1ab/nsp2150S150KS330KnonsynTCAAAG210.51253-1255
ORF1ab/nsp2150S150KS330KnonsynTCaAAa210.51253-1255
ORF1ab/nsp2150S150FS330FnonsyntCAtTT210.51253-1255
ORF1ab/nsp2150S150del2S330del2delTCa--a1111253-1255
ORF1ab/nsp2150S150del1S330del1deltcAtc-1111253-1255

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2150S150StcAtcG16841733All0.000322
ORF1ab/nsp2150S150StcAtcT351733All0.000007
ORF1ab/nsp2150S150StcAtcC141733All0.000003
ORF1ab/nsp2150S150StcAtcG12341234B.1.6280.434813
ORF1ab/nsp2150S150LtCatTa482482All0.000092
ORF1ab/nsp2150S150LtCatTa140140B.1.1.70.000125
ORF1ab/nsp2150S150LtCatTa105105AZ.60.882353
ORF1ab/nsp2150S150StcAtcG8383AY.1190.002931
ORF1ab/nsp2150S150StcAtcG5980B.10.00054
ORF1ab/nsp2150S150StcAtcT2080B.10.000183
ORF1ab/nsp2150S150StcAtcC180B.10.000009
ORF1ab/nsp2150S150StcAtcG6770B.1.1.70.00006
ORF1ab/nsp2150S150StcAtcC370B.1.1.70.000003
ORF1ab/nsp2150S150ATcaGca5166All0.00001
ORF1ab/nsp2150S150ATcAGcT1566All0.000003
ORF1ab/nsp2150S150TTcaAca4952All0.000009
ORF1ab/nsp2150S150TTcAAcT252All0
ORF1ab/nsp2150S150TTcAAcG152All0
ORF1ab/nsp2150S150StcAtcG3343AY.40.000051
ORF1ab/nsp2150S150StcAtcT943AY.40.000014
ORF1ab/nsp2150S150StcAtcC143AY.40.000002
ORF1ab/nsp2150S150LtCatTa4242AY.40.000065
ORF1ab/nsp2150S150LtCatTa4141AY.540.003909
ORF1ab/nsp2150S150ATcAGcT1530B.10.000137
ORF1ab/nsp2150S150ATcaGca1530B.10.000137
ORF1ab/nsp2150S150StcAtcG2929B.1.3710.032548
ORF1ab/nsp2150S150LtCatTa2626B.1.617.20.000098
ORF1ab/nsp2150S150delTCA---2323All0.000004
ORF1ab/nsp2150S150LtCatTa2222AY.30.000219
ORF1ab/nsp2150S150TTcaAca2122B.1.1.70.000019
ORF1ab/nsp2150S150TTcAAcT122B.1.1.70.000001
ORF1ab/nsp2150S150StcAtcG1822B.1.617.20.000068
ORF1ab/nsp2150S150StcAtcT422B.1.617.20.000015
ORF1ab/nsp2150S150StcAtcG1818B.1.3200.022416
ORF1ab/nsp2150S150TTcaAca1717AY.40.000026
ORF1ab/nsp2150S150StcAtcG1515B.1.9.50.085227
ORF1ab/nsp2150S150LtCatTa1515P.10.000236
ORF1ab/nsp2150S150StcAtcG1212AY.1030.000075
ORF1ab/nsp2150S150StcAtcG1111AY.250.000066
ORF1ab/nsp2150S150XtCatAa79All0.000001
ORF1ab/nsp2150S150XtCatGa19All0
ORF1ab/nsp2150S150XtCAtAG19All0
ORF1ab/nsp2150S150LtCatTa99AY.440.000055
ORF1ab/nsp2150S150ATcaGca99B.1.1.70.000008
ORF1ab/nsp2150S150StcAtcG59P.10.000079
ORF1ab/nsp2150S150StcAtcC49P.10.000063
ORF1ab/nsp2150S150PTcaCca57All0.000001
ORF1ab/nsp2150S150PTcACcG17All0
ORF1ab/nsp2150S150PTcACcT17All0
ORF1ab/nsp2150S150TTcaAca77AY.250.000042
ORF1ab/nsp2150S150StcAtcG77AY.370.002212
ORF1ab/nsp2150S150StcAtcG77B.1.20.000062
ORF1ab/nsp2150S150StcAtcG77P.1.70.002235
ORF1ab/nsp2150S150StcAtcG46AY.430.000018
ORF1ab/nsp2150S150StcAtcC16AY.430.000004
ORF1ab/nsp2150S150StcAtcT16AY.430.000004
ORF1ab/nsp2150S150LtCatTa66B.1.1.5190.000238
ORF1ab/nsp2150S150ATcaGca66C.36.30.003403
ORF1ab/nsp2150S150LtCatTa550.277778
ORF1ab/nsp2150S150StcAtcG55AY.440.00003
ORF1ab/nsp2150S150LtCatTa55B.10.000046
ORF1ab/nsp2150S150delTCA---55B.1.1.330.002104
ORF1ab/nsp2150S150ATcaGca55B.1.1770.000066
ORF1ab/nsp2150S150StcAtcG44AY.1200.000149
ORF1ab/nsp2150S150ATcaGca44B.1.258.170.000416
ORF1ab/nsp2150S150XtCatAa130.055556
ORF1ab/nsp2150S150XtCatGa130.055556
ORF1ab/nsp2150S150XtCAtAG130.055556
ORF1ab/nsp2150S150StcAtcG23AY.1000.000092
ORF1ab/nsp2150S150StcAtcT13AY.1000.000046
ORF1ab/nsp2150S150StcAtcG33AY.230.000209
ORF1ab/nsp2150S150StcAtcG33AY.460.000312
ORF1ab/nsp2150S150StcAtcG33AY.9.20.00011
ORF1ab/nsp2150S150LtCatTa33B.1.10.000054
ORF1ab/nsp2150S150delTCA---33B.1.1.3480.002389
ORF1ab/nsp2150S150delTCA---33B.1.1.70.000003
ORF1ab/nsp2150S150LtCatTa33B.1.1770.00004
ORF1ab/nsp2150S150LtCatTa33B.1.177.210.000229
ORF1ab/nsp2150S150LtCatTa33B.1.466.20.001174
ORF1ab/nsp2150S150LtCatTa33B.1.5260.000071
ORF1ab/nsp2150S150StcAtcG33B.1.6270.006061
ORF1ab/nsp2150S150StcAtcG33C.300.005181
ORF1ab/nsp2150S150StcAtcG33C.370.000348
ORF1ab/nsp2150S150LtCatTa33R.10.00027
ORF1ab/nsp2150S150delTCA---220.111111
ORF1ab/nsp2150S150TTcaAca120.055556
ORF1ab/nsp2150S150TTcAAcG120.055556
ORF1ab/nsp2150S150StcAtcC120.055556
ORF1ab/nsp2150S150RTCaAGa120.055556
ORF1ab/nsp2150S150RTCAAGG120.055556
ORF1ab/nsp2150S150KTCaAAa120.055556
ORF1ab/nsp2150S150StcAtcG120.055556
ORF1ab/nsp2150S150KTCAAAG120.055556
ORF1ab/nsp2150S150QTCaCAa22All0
ORF1ab/nsp2150S150WtCAtGG22All0
ORF1ab/nsp2150S150KTCAAAG12All0
ORF1ab/nsp2150S150FtCAtTT12All0
ORF1ab/nsp2150S150RTCaAGa12All0
ORF1ab/nsp2150S150FtCAtTC12All0
ORF1ab/nsp2150S150RTCAAGG12All0
ORF1ab/nsp2150S150KTCaAAa12All0
ORF1ab/nsp2150S150StcAtcG22AY.1020.000053
ORF1ab/nsp2150S150LtCatTa22AY.1030.000012
ORF1ab/nsp2150S150LtCatTa22AY.1180.000125
ORF1ab/nsp2150S150StcAtcC22AY.200.000078
ORF1ab/nsp2150S150StcAtcG22AY.330.000134
ORF1ab/nsp2150S150LtCatTa22AY.390.000049
ORF1ab/nsp2150S150LtCatTa22AY.4.20.000043
ORF1ab/nsp2150S150LtCatTa22AY.430.000009
ORF1ab/nsp2150S150LtCatTa22AY.50.000041
ORF1ab/nsp2150S150StcAtcG22AY.590.001059
ORF1ab/nsp2150S150StcAtcG22AY.750.000112
ORF1ab/nsp2150S150StcAtcG22AY.9.10.000167
ORF1ab/nsp2150S150LtCatTa22AY.980.000158
ORF1ab/nsp2150S150XtCatAa22B.10.000018
ORF1ab/nsp2150S150StcAtcG22B.1.1.330.000842
ORF1ab/nsp2150S150LtCatTa22B.1.1.4860.003155
ORF1ab/nsp2150S150LtCatTa22B.1.2400.000431
ORF1ab/nsp2150S150ATcaGca22B.1.36.10.002281
ORF1ab/nsp2150S150StcAtcG22B.1.4460.04
ORF1ab/nsp2150S150delTCA---22N.60.014184
ORF1ab/nsp2150S150StcAtcG22P.1.120.000968
ORF1ab/nsp2150S150StcAtcG22P.1.150.000465
ORF1ab/nsp2150S150delTCA---22P.20.000373
ORF1ab/nsp2150S150FtCAtTC110.055556
ORF1ab/nsp2150S150WtCAtGG110.055556
ORF1ab/nsp2150S150del1tcAtc-11All0
ORF1ab/nsp2150S150del2TCa--a11All0
ORF1ab/nsp2150S150StcAtcG11AU.30.00211
ORF1ab/nsp2150S150LtCatTa11AY.1000.000046
ORF1ab/nsp2150S150LtCatTa11AY.1020.000027
ORF1ab/nsp2150S150StcAtcG11AY.1130.000142
ORF1ab/nsp2150S150TTcaAca11AY.1130.000142
ORF1ab/nsp2150S150StcAtcG11AY.1170.000085
ORF1ab/nsp2150S150TTcaAca11AY.1170.000085
ORF1ab/nsp2150S150XtCatAa11AY.1180.000063
ORF1ab/nsp2150S150LtCatTa11AY.1190.000035
ORF1ab/nsp2150S150LtCatTa11AY.1210.000135
ORF1ab/nsp2150S150LtCatTa11AY.200.000039
ORF1ab/nsp2150S150delTCA---11AY.250.000006
ORF1ab/nsp2150S150ATcaGca11AY.260.000028
ORF1ab/nsp2150S150LtCatTa11AY.260.000028
ORF1ab/nsp2150S150StcAtcG11AY.260.000028
ORF1ab/nsp2150S150StcAtcC11AY.290.000016
ORF1ab/nsp2150S150StcAtcG11AY.30.00001
ORF1ab/nsp2150S150ATcaGca11AY.30.00001
ORF1ab/nsp2150S150ATcaGca11AY.330.000067
ORF1ab/nsp2150S150StcAtcG11AY.360.000148
ORF1ab/nsp2150S150StcAtcG11AY.390.000025
ORF1ab/nsp2150S150delTCA---11AY.40.000002
ORF1ab/nsp2150S150LtCatTa11AY.4.2.10.000149
ORF1ab/nsp2150S150LtCatTa11AY.4.50.000107
ORF1ab/nsp2150S150FtCAtTT11AY.400.000964
ORF1ab/nsp2150S150LtCatTa11AY.420.00004
ORF1ab/nsp2150S150delTCA---11AY.430.000004
ORF1ab/nsp2150S150ATcaGca11AY.430.000004
ORF1ab/nsp2150S150TTcAAcT11AY.440.000006
ORF1ab/nsp2150S150QTCaCAa11AY.440.000006
ORF1ab/nsp2150S150PTcACcT11AY.440.000006
ORF1ab/nsp2150S150StcAtcG11AY.450.000122
ORF1ab/nsp2150S150StcAtcG11AY.46.60.000072
ORF1ab/nsp2150S150ATcaGca11AY.470.000031
ORF1ab/nsp2150S150XtCatAa11AY.490.003195
ORF1ab/nsp2150S150LtCatTa11AY.60.000041
ORF1ab/nsp2150S150LtCatTa11AY.620.000436
ORF1ab/nsp2150S150LtCatTa11AY.690.000187
ORF1ab/nsp2150S150StcAtcG11AY.690.000187
ORF1ab/nsp2150S150LtCatTa11AY.7.10.000113
ORF1ab/nsp2150S150PTcaCca11AY.7.10.000113
ORF1ab/nsp2150S150PTcaCca11AY.710.000475
ORF1ab/nsp2150S150XtCatAa11AY.750.000056
ORF1ab/nsp2150S150delTCA---11AY.750.000056
ORF1ab/nsp2150S150LtCatTa11AY.860.00083
ORF1ab/nsp2150S150LtCatTa11AY.90.000068
ORF1ab/nsp2150S150WtCAtGG11AY.9.20.000037
ORF1ab/nsp2150S150PTcaCca11B.10.000009
ORF1ab/nsp2150S150del2TCa--a11B.10.000009
ORF1ab/nsp2150S150QTCaCAa11B.10.000009
ORF1ab/nsp2150S150StcAtcG11B.1.1.10.000327
ORF1ab/nsp2150S150StcAtcG11B.1.1.1170.009709
ORF1ab/nsp2150S150ATcaGca11B.1.1.2220.000204
ORF1ab/nsp2150S150StcAtcG11B.1.1.250.000569
ORF1ab/nsp2150S150LtCatTa11B.1.1.3060.000438
ORF1ab/nsp2150S150PTcaCca11B.1.1.4320.001266
ORF1ab/nsp2150S150LtCatTa11B.1.1.630.000386
ORF1ab/nsp2150S150PTcaCca11B.1.1.70.000001
ORF1ab/nsp2150S150ATcaGca11B.1.1600.000031
ORF1ab/nsp2150S150StcAtcG11B.1.1600.000031
ORF1ab/nsp2150S150TTcaAca11B.1.177.210.000076
ORF1ab/nsp2150S150StcAtcG11B.1.177.420.000894
ORF1ab/nsp2150S150StcAtcG11B.1.177.730.000566
ORF1ab/nsp2150S150StcAtcG11B.1.177.90.001332
ORF1ab/nsp2150S150LtCatTa11B.1.20.000009
ORF1ab/nsp2150S150PTcACcG11B.1.20.000009
ORF1ab/nsp2150S150del1tcAtc-11B.1.20.000009
ORF1ab/nsp2150S150LtCatTa11B.1.230.006061
ORF1ab/nsp2150S150LtCatTa11B.1.2340.000132
ORF1ab/nsp2150S150StcAtcG11B.1.2580.000067
ORF1ab/nsp2150S150LtCatTa11B.1.2580.000067
ORF1ab/nsp2150S150StcAtcG11B.1.3110.000275
ORF1ab/nsp2150S150StcAtcG11B.1.3330.010526
ORF1ab/nsp2150S150LtCatTa11B.1.3490.000715
ORF1ab/nsp2150S150LtCatTa11B.1.36.290.000517
ORF1ab/nsp2150S150delTCA---11B.1.4290.000024
ORF1ab/nsp2150S150StcAtcG11B.1.466.20.000391
ORF1ab/nsp2150S150StcAtcG11B.1.4700.001404
ORF1ab/nsp2150S150LtCatTa11B.1.5250.000113
ORF1ab/nsp2150S150StcAtcG11B.1.5260.000024
ORF1ab/nsp2150S150ATcaGca11B.1.5800.004065
ORF1ab/nsp2150S150StcAtcG11B.1.5960.000087
ORF1ab/nsp2150S150StcAtcG11B.1.6020.006536
ORF1ab/nsp2150S150ATcaGca11B.1.617.10.000129
ORF1ab/nsp2150S150XtCatAa11B.1.617.10.000129
ORF1ab/nsp2150S150ATcaGca11B.1.617.20.000004
ORF1ab/nsp2150S150StcAtcG11B.1.6330.041667
ORF1ab/nsp2150S150LtCatTa11B.400.000364
ORF1ab/nsp2150S150LtCatTa11D.20.000075
ORF1ab/nsp2150S150delTCA---11N.40.004255
ORF1ab/nsp2150S150LtCatTa11P.1.140.000048
ORF1ab/nsp2150S150LtCatTa11P.1.150.000232
ORF1ab/nsp2150S150LtCatTa11P.20.000187
ORF1ab/nsp2150S150StcAtcG11Q.80.000165
ORF1ab/nsp2150S150LtCatTa11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.