CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 15

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp215G15GG195GsynggCggT160314190.885215848-850
ORF1ab/nsp215G15GG195GsynggCggA16031820.113537848-850
ORF1ab/nsp215G15GG195GsynggCggG160320.00124766848-850
ORF1ab/nsp215G15CG195CnonsynGgcTgc1001001848-850
ORF1ab/nsp215G15delG195deldelGGC---37371848-850
ORF1ab/nsp215G15VG195VnonsyngGcgTc13131848-850
ORF1ab/nsp215G15DG195DnonsyngGcgAc991848-850
ORF1ab/nsp215G15SG195SnonsynGgcAgc771848-850
ORF1ab/nsp215G15RG195RnonsynGgcCgc320.666667848-850
ORF1ab/nsp215G15del1G195del1delggCgg-310.333333848-850
ORF1ab/nsp215G15del1G195del1delGgc-gc310.333333848-850
ORF1ab/nsp215G15RG195RnonsynGgCAgA310.333333848-850
ORF1ab/nsp215G15del1G195del1delGgC-gT310.333333848-850
ORF1ab/nsp215G15KG195KnonsynGGCAAA221848-850
ORF1ab/nsp215G15FG195FnonsynGGcTTc111848-850
ORF1ab/nsp215G15EG195EnonsyngGCgAA111848-850
ORF1ab/nsp215G15NG195NnonsynGGcAAc111848-850
ORF1ab/nsp215G15AG195AnonsyngGcgCc111848-850

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp215G15GggCggT14191603All0.000271
ORF1ab/nsp215G15GggCggA1821603All0.000035
ORF1ab/nsp215G15GggCggG21603All0
ORF1ab/nsp215G15GggCggT634646B.1.1.70.000568
ORF1ab/nsp215G15GggCggA12646B.1.1.70.000011
ORF1ab/nsp215G15GggCggT156163AY.40.000243
ORF1ab/nsp215G15GggCggA7163AY.40.000011
ORF1ab/nsp215G15GggCggT110110AA.41
ORF1ab/nsp215G15CGgcTgc100100All0.000019
ORF1ab/nsp215G15GggCggT3162AY.430.000137
ORF1ab/nsp215G15GggCggA3162AY.430.000137
ORF1ab/nsp215G15GggCggA4760AY.250.000283
ORF1ab/nsp215G15GggCggT1360AY.250.000078
ORF1ab/nsp215G15GggCggT4549B.1.617.20.000169
ORF1ab/nsp215G15GggCggA449B.1.617.20.000015
ORF1ab/nsp215G15GggCggT2839AY.440.00017
ORF1ab/nsp215G15GggCggA1139AY.440.000067
ORF1ab/nsp215G15delGGC---3737All0.000007
ORF1ab/nsp215G15GggCggA3237AY.260.000906
ORF1ab/nsp215G15GggCggT537AY.260.000142
ORF1ab/nsp215G15GggCggT3535B.1.1.2220.00714
ORF1ab/nsp215G15GggCggT2020B.1.1770.000263
ORF1ab/nsp215G15CGgcTgc1919B.1.1.70.000017
ORF1ab/nsp215G15GggCggT1619P.10.000252
ORF1ab/nsp215G15GggCggA319P.10.000047
ORF1ab/nsp215G15GggCggT1518B.1.20.000132
ORF1ab/nsp215G15GggCggA318B.1.20.000026
ORF1ab/nsp215G15GggCggT1717P.1.150.00395
ORF1ab/nsp215G15GggCggT1116B.10.000101
ORF1ab/nsp215G15GggCggA516B.10.000046
ORF1ab/nsp215G15GggCggT1515AY.1020.000398
ORF1ab/nsp215G15GggCggT1414AY.290.000221
ORF1ab/nsp215G15CGgcTgc1414B.10.000128
ORF1ab/nsp215G15VgGcgTc1313All0.000002
ORF1ab/nsp215G15GggCggT1313B.1.1.280.004046
ORF1ab/nsp215G15GggCggT1313B.1.1600.000405
ORF1ab/nsp215G15GggCggT712AY.30.00007
ORF1ab/nsp215G15GggCggA512AY.30.00005
ORF1ab/nsp215G15GggCggT1212AY.98.10.000581
ORF1ab/nsp215G15GggCggT1111B.1.1.2140.00061
ORF1ab/nsp215G15GggCggT1010P.1.70.003193
ORF1ab/nsp215G15DgGcgAc99All0.000002
ORF1ab/nsp215G15GggCggT89AY.4.20.000174
ORF1ab/nsp215G15GggCggG19AY.4.20.000022
ORF1ab/nsp215G15GggCggT99AY.50.000186
ORF1ab/nsp215G15GggCggT78AY.1030.000043
ORF1ab/nsp215G15GggCggA18AY.1030.000006
ORF1ab/nsp215G15GggCggT88B.1.177.870.005822
ORF1ab/nsp215G15GggCggT88B.1.4270.000404
ORF1ab/nsp215G15GggCggT88B.1.5260.000188
ORF1ab/nsp215G15SGgcAgc77All0.000001
ORF1ab/nsp215G15CGgcTgc77AY.40.000011
ORF1ab/nsp215G15GggCggT77B0.000895
ORF1ab/nsp215G15GggCggT77B.1.5250.000792
ORF1ab/nsp215G15CGgcTgc77D.20.000525
ORF1ab/nsp215G15GggCggT66AY.390.000148
ORF1ab/nsp215G15GggCggT56AY.470.000156
ORF1ab/nsp215G15GggCggA16AY.470.000031
ORF1ab/nsp215G15GggCggT66AY.7.10.000676
ORF1ab/nsp215G15GggCggT46B.1.4290.000094
ORF1ab/nsp215G15GggCggA26B.1.4290.000047
ORF1ab/nsp215G15CGgcTgc55AY.430.000022
ORF1ab/nsp215G15delGGC---55B.1.1.330.002104
ORF1ab/nsp215G15GggCggT44AY.200.000155
ORF1ab/nsp215G15GggCggA24AY.340.000194
ORF1ab/nsp215G15GggCggT24AY.340.000194
ORF1ab/nsp215G15GggCggT44AY.360.000593
ORF1ab/nsp215G15GggCggT44AY.610.000419
ORF1ab/nsp215G15VgGcgTc44B.10.000037
ORF1ab/nsp215G15GggCggT44B.1.1.1390.090909
ORF1ab/nsp215G15delGGC---44B.1.1.3480.003185
ORF1ab/nsp215G15delGGC---44B.1.1.70.000004
ORF1ab/nsp215G15RGgcCgc23All0
ORF1ab/nsp215G15del1GgC-gT13All0
ORF1ab/nsp215G15RGgCAgA13All0
ORF1ab/nsp215G15del1ggCgg-13All0
ORF1ab/nsp215G15del1Ggc-gc13All0
ORF1ab/nsp215G15GggCggT33AY.1190.000106
ORF1ab/nsp215G15CGgcTgc33AY.250.000018
ORF1ab/nsp215G15CGgcTgc33AY.420.000121
ORF1ab/nsp215G15CGgcTgc33AY.440.000018
ORF1ab/nsp215G15GggCggT33AY.75.10.000541
ORF1ab/nsp215G15GggCggT33AY.9.20.00011
ORF1ab/nsp215G15GggCggT33B.1.1.2740.015152
ORF1ab/nsp215G15GggCggT33B.1.1.700.001023
ORF1ab/nsp215G15GggCggA33B.1.4280.003061
ORF1ab/nsp215G15GggCggT33B.4.80.214286
ORF1ab/nsp215G15GggCggA120.055556
ORF1ab/nsp215G15GggCggG120.055556
ORF1ab/nsp215G15GggCggT22A0.000774
ORF1ab/nsp215G15GggCggT22A.23.10.001408
ORF1ab/nsp215G15KGGCAAA22All0
ORF1ab/nsp215G15CGgcTgc22AY.1020.000053
ORF1ab/nsp215G15CGgcTgc22AY.1030.000012
ORF1ab/nsp215G15GggCggT22AY.1160.000574
ORF1ab/nsp215G15GggCggT22AY.330.000134
ORF1ab/nsp215G15GggCggT22AY.460.000208
ORF1ab/nsp215G15CGgcTgc22AY.470.000062
ORF1ab/nsp215G15CGgcTgc22AY.5.30.000675
ORF1ab/nsp215G15GggCggT22AY.750.000112
ORF1ab/nsp215G15VgGcgTc22B.1.10.000036
ORF1ab/nsp215G15CGgcTgc22B.1.1.10.000653
ORF1ab/nsp215G15GggCggT22B.1.1.3640.133333
ORF1ab/nsp215G15GggCggT22B.1.1.5190.000079
ORF1ab/nsp215G15DgGcgAc22B.1.1.70.000002
ORF1ab/nsp215G15CGgcTgc22B.1.177.600.000437
ORF1ab/nsp215G15GggCggT22B.1.177.730.001133
ORF1ab/nsp215G15DgGcgAc22B.1.20.000018
ORF1ab/nsp215G15GggCggA22B.1.2400.000431
ORF1ab/nsp215G15CGgcTgc22B.1.3110.000549
ORF1ab/nsp215G15GggCggT22B.1.3510.000059
ORF1ab/nsp215G15GggCggT22B.1.360.000292
ORF1ab/nsp215G15GggCggA22B.1.4160.002538
ORF1ab/nsp215G15CGgcTgc22B.1.4270.000101
ORF1ab/nsp215G15GggCggT22B.1.4530.006472
ORF1ab/nsp215G15VgGcgTc22B.1.617.20.000008
ORF1ab/nsp215G15CGgcTgc22B.1.617.20.000008
ORF1ab/nsp215G15delGGC---22B.1.617.20.000008
ORF1ab/nsp215G15GggCggT22C.360.001821
ORF1ab/nsp215G15delGGC---22N.40.008511
ORF1ab/nsp215G15delGGC---22N.60.014184
ORF1ab/nsp215G15delGGC---22P.20.000373
ORF1ab/nsp215G15KGGCAAA110.055556
ORF1ab/nsp215G15NGGcAAc110.055556
ORF1ab/nsp215G15RGgCAgA110.055556
ORF1ab/nsp215G15EgGCgAA110.055556
ORF1ab/nsp215G15DgGcgAc110.055556
ORF1ab/nsp215G15SGgcAgc110.055556
ORF1ab/nsp215G15delGGC---11A.2.20.001689
ORF1ab/nsp215G15GggCggT11A.2.50.000499
ORF1ab/nsp215G15GggCggT11A.50.001923
ORF1ab/nsp215G15FGGcTTc11All0
ORF1ab/nsp215G15EgGCgAA11All0
ORF1ab/nsp215G15NGGcAAc11All0
ORF1ab/nsp215G15AgGcgCc11All0
ORF1ab/nsp215G15GggCggT11AY.1000.000046
ORF1ab/nsp215G15delGGC---11AY.1110.000183
ORF1ab/nsp215G15GggCggA11AY.1130.000142
ORF1ab/nsp215G15GggCggA11AY.1170.000085
ORF1ab/nsp215G15CGgcTgc11AY.1180.000063
ORF1ab/nsp215G15del1Ggc-gc11AY.1190.000035
ORF1ab/nsp215G15SGgcAgc11AY.1200.000037
ORF1ab/nsp215G15CGgcTgc11AY.16.10.00047
ORF1ab/nsp215G15GggCggT11AY.16.10.00047
ORF1ab/nsp215G15GggCggT11AY.230.00007
ORF1ab/nsp215G15delGGC---11AY.250.000006
ORF1ab/nsp215G15CGgcTgc11AY.30.00001
ORF1ab/nsp215G15CGgcTgc11AY.390.000025
ORF1ab/nsp215G15SGgcAgc11AY.40.000002
ORF1ab/nsp215G15VgGcgTc11AY.40.000002
ORF1ab/nsp215G15GggCggA11AY.4.2.10.000149
ORF1ab/nsp215G15GggCggT11AY.4.50.000107
ORF1ab/nsp215G15GggCggT11AY.450.000122
ORF1ab/nsp215G15CGgcTgc11AY.450.000122
ORF1ab/nsp215G15CGgcTgc11AY.46.20.000635
ORF1ab/nsp215G15GggCggT11AY.46.40.000165
ORF1ab/nsp215G15CGgcTgc11AY.50.000021
ORF1ab/nsp215G15CGgcTgc11AY.530.000288
ORF1ab/nsp215G15GggCggT11AY.560.001605
ORF1ab/nsp215G15GggCggT11AY.60.000041
ORF1ab/nsp215G15CGgcTgc11AY.610.000105
ORF1ab/nsp215G15GggCggT11AY.840.000437
ORF1ab/nsp215G15GggCggT11AY.9.10.000084
ORF1ab/nsp215G15delGGC---11AY.9.20.000037
ORF1ab/nsp215G15GggCggT11AY.980.000079
ORF1ab/nsp215G15CGgcTgc11AY.980.000079
ORF1ab/nsp215G15CGgcTgc11AY.98.10.000048
ORF1ab/nsp215G15GggCggT11AY.990.001049
ORF1ab/nsp215G15delGGC---11AY.99.10.001553
ORF1ab/nsp215G15GggCggT11AY.99.20.000092
ORF1ab/nsp215G15DgGcgAc11B.10.000009
ORF1ab/nsp215G15FGGcTTc11B.10.000009
ORF1ab/nsp215G15delGGC---11B.10.000009
ORF1ab/nsp215G15RGgcCgc11B.10.000009
ORF1ab/nsp215G15KGGCAAA11B.10.000009
ORF1ab/nsp215G15SGgcAgc11B.10.000009
ORF1ab/nsp215G15GggCggT11B.1.10.000018
ORF1ab/nsp215G15del1GgC-gT11B.1.10.000018
ORF1ab/nsp215G15CGgcTgc11B.1.10.000018
ORF1ab/nsp215G15GggCggT11B.1.1.10.000327
ORF1ab/nsp215G15GggCggT11B.1.1.100.001115
ORF1ab/nsp215G15DgGcgAc11B.1.1.1870.00885
ORF1ab/nsp215G15GggCggT11B.1.1.1890.001513
ORF1ab/nsp215G15CGgcTgc11B.1.1.2220.000204
ORF1ab/nsp215G15delGGC---11B.1.1.2220.000204
ORF1ab/nsp215G15GggCggT11B.1.1.250.000569
ORF1ab/nsp215G15GggCggT11B.1.1.2840.000107
ORF1ab/nsp215G15VgGcgTc11B.1.1.3030.002762
ORF1ab/nsp215G15GggCggT11B.1.1.3160.000925
ORF1ab/nsp215G15GggCggT11B.1.1.3180.000302
ORF1ab/nsp215G15GggCggT11B.1.1.3260.001761
ORF1ab/nsp215G15SGgcAgc11B.1.1.3260.001761
ORF1ab/nsp215G15GggCggT11B.1.1.3880.045455
ORF1ab/nsp215G15GggCggT11B.1.1.400.034483
ORF1ab/nsp215G15delGGC---11B.1.1.4200.001006
ORF1ab/nsp215G15RGgcCgc11B.1.1.70.000001
ORF1ab/nsp215G15GggCggT11B.1.1280.000635
ORF1ab/nsp215G15SGgcAgc11B.1.1770.000013
ORF1ab/nsp215G15DgGcgAc11B.1.1770.000013
ORF1ab/nsp215G15VgGcgTc11B.1.1770.000013
ORF1ab/nsp215G15CGgcTgc11B.1.177.210.000076
ORF1ab/nsp215G15GggCggA11B.1.177.40.000211
ORF1ab/nsp215G15delGGC---11B.1.177.540.000606
ORF1ab/nsp215G15GggCggT11B.1.177.570.000281
ORF1ab/nsp215G15VgGcgTc11B.1.177.70.000165
ORF1ab/nsp215G15GggCggT11B.1.177.810.000189
ORF1ab/nsp215G15delGGC---11B.1.177.830.001481
ORF1ab/nsp215G15CGgcTgc11B.1.2210.000071
ORF1ab/nsp215G15delGGC---11B.1.230.006061
ORF1ab/nsp215G15CGgcTgc11B.1.2400.000216
ORF1ab/nsp215G15GggCggT11B.1.2540.025
ORF1ab/nsp215G15GggCggT11B.1.2580.000067
ORF1ab/nsp215G15DgGcgAc11B.1.3510.00003
ORF1ab/nsp215G15AgGcgCc11B.1.3510.00003
ORF1ab/nsp215G15CGgcTgc11B.1.351.20.000303
ORF1ab/nsp215G15GggCggT11B.1.36.180.00042
ORF1ab/nsp215G15GggCggT11B.1.36.380.001642
ORF1ab/nsp215G15GggCggT11B.1.3670.000792
ORF1ab/nsp215G15del1ggCgg-11B.1.3980.002976
ORF1ab/nsp215G15delGGC---11B.1.4270.00005
ORF1ab/nsp215G15delGGC---11B.1.4290.000024
ORF1ab/nsp215G15GggCggT11B.1.5020.052632
ORF1ab/nsp215G15CGgcTgc11B.1.5370.02
ORF1ab/nsp215G15GggCggT11B.1.5800.004065
ORF1ab/nsp215G15GggCggA11B.1.5950.000261
ORF1ab/nsp215G15CGgcTgc11B.1.5960.000087
ORF1ab/nsp215G15GggCggT11B.1.617.10.000129
ORF1ab/nsp215G15SGgcAgc11B.1.617.20.000004
ORF1ab/nsp215G15delGGC---11B.1.617.30.002985
ORF1ab/nsp215G15GggCggA11B.1.6280.000352
ORF1ab/nsp215G15delGGC---11B.1.6380.052632
ORF1ab/nsp215G15GggCggT11B.1.780.008547
ORF1ab/nsp215G15CGgcTgc11B.310.003731
ORF1ab/nsp215G15CGgcTgc11B.4.50.011905
ORF1ab/nsp215G15GggCggT11B.560.028571
ORF1ab/nsp215G15GggCggT11B.60.00091
ORF1ab/nsp215G15GggCggT11C.20.016129
ORF1ab/nsp215G15delGGC---11C.350.000774
ORF1ab/nsp215G15VgGcgTc11D.20.000075
ORF1ab/nsp215G15GggCggA11D.20.000075
ORF1ab/nsp215G15GggCggT11D.50.004975
ORF1ab/nsp215G15GggCggA11P.1.140.000048
ORF1ab/nsp215G15GggCggT11Q.30.000145