CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 140

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2140L140FL320FnonsynCtcTtc125212500.9984031223-1225
ORF1ab/nsp2140L140FL320FnonsynCtCTtT125220.001597441223-1225
ORF1ab/nsp2140L140LL320LsynctCctT7807640.9794871223-1225
ORF1ab/nsp2140L140LL320LsynctCctA780130.01666671223-1225
ORF1ab/nsp2140L140LL320LsynctCctG78030.003846151223-1225
ORF1ab/nsp2140L140IL320InonsynCtcAtc14714711223-1225
ORF1ab/nsp2140L140RL320RnonsyncTccGc434311223-1225
ORF1ab/nsp2140L140delL320deldelCTC---303011223-1225
ORF1ab/nsp2140L140HL320HnonsyncTccAc24210.8751223-1225
ORF1ab/nsp2140L140HL320HnonsyncTCcAT2430.1251223-1225
ORF1ab/nsp2140L140PL320PnonsyncTccCc16120.751223-1225
ORF1ab/nsp2140L140PL320PnonsyncTCcCG1620.1251223-1225
ORF1ab/nsp2140L140PL320PnonsyncTCcCA1620.1251223-1225
ORF1ab/nsp2140L140VL320VnonsynCtcGtc6611223-1225
ORF1ab/nsp2140L140SL320SnonsynCTCTCG630.51223-1225
ORF1ab/nsp2140L140SL320SnonsynCTCTCA620.3333331223-1225
ORF1ab/nsp2140L140SL320SnonsynCTcTCc610.1666671223-1225
ORF1ab/nsp2140L140QL320QnonsyncTCcAA530.61223-1225
ORF1ab/nsp2140L140QL320QnonsyncTCcAG520.41223-1225
ORF1ab/nsp2140L140XL320XnonsynCTCTAG420.51223-1225
ORF1ab/nsp2140L140XL320XnonsynCTCTAA420.51223-1225
ORF1ab/nsp2140L140AL320AnonsynCTcGCc2211223-1225
ORF1ab/nsp2140L140del1L320del1delctCct-1111223-1225
ORF1ab/nsp2140L140CL320CnonsynCTcTGc1111223-1225

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2140L140FCtcTtc12501252All0.000239
ORF1ab/nsp2140L140FCtCTtT21252All0
ORF1ab/nsp2140L140LctCctT764780All0.000146
ORF1ab/nsp2140L140LctCctA13780All0.000002
ORF1ab/nsp2140L140LctCctG3780All0.000001
ORF1ab/nsp2140L140FCtcTtc453453B.1.1.70.000406
ORF1ab/nsp2140L140FCtcTtc319319B.1.258.220.850667
ORF1ab/nsp2140L140LctCctT231232B.1.1.70.000207
ORF1ab/nsp2140L140LctCctA1232B.1.1.70.000001
ORF1ab/nsp2140L140ICtcAtc147147All0.000028
ORF1ab/nsp2140L140LctCctT121121B.1.360.017654
ORF1ab/nsp2140L140FCtcTtc6668AY.40.000103
ORF1ab/nsp2140L140FCtCTtT268AY.40.000003
ORF1ab/nsp2140L140LctCctT5962AY.40.000092
ORF1ab/nsp2140L140LctCctG362AY.40.000005
ORF1ab/nsp2140L140ICtcAtc6060B.1.1.2630.093458
ORF1ab/nsp2140L140LctCctT5050AY.50.001032
ORF1ab/nsp2140L140FCtcTtc5050B.1.4290.001176
ORF1ab/nsp2140L140RcTccGc4343All0.000008
ORF1ab/nsp2140L140LctCctT3636AY.30.000358
ORF1ab/nsp2140L140delCTC---3030All0.000006
ORF1ab/nsp2140L140LctCctT2727AY.430.00012
ORF1ab/nsp2140L140LctCctT2425B.1.617.20.00009
ORF1ab/nsp2140L140LctCctA125B.1.617.20.000004
ORF1ab/nsp2140L140HcTccAc2124All0.000004
ORF1ab/nsp2140L140HcTCcAT324All0.000001
ORF1ab/nsp2140L140FCtcTtc2323B.1.617.20.000087
ORF1ab/nsp2140L140LctCctT1818B.1.20.000158
ORF1ab/nsp2140L140FCtcTtc1717AY.1030.000106
ORF1ab/nsp2140L140FCtcTtc1717AY.30.000169
ORF1ab/nsp2140L140PcTccCc1216All0.000002
ORF1ab/nsp2140L140PcTCcCG216All0
ORF1ab/nsp2140L140PcTCcCA216All0
ORF1ab/nsp2140L140FCtcTtc1616AY.470.000498
ORF1ab/nsp2140L140LctCctT1515AY.250.00009
ORF1ab/nsp2140L140FCtcTtc1515AY.250.00009
ORF1ab/nsp2140L140HcTccAc1414B.1.1.70.000013
ORF1ab/nsp2140L140FCtcTtc1313B.10.000119
ORF1ab/nsp2140L140ICtcAtc1313B.1.1260.016582
ORF1ab/nsp2140L140FCtcTtc1313B.1.20.000114
ORF1ab/nsp2140L140FCtcTtc1212B.1.5920.48
ORF1ab/nsp2140L140FCtcTtc1111AY.1020.000292
ORF1ab/nsp2140L140ICtcAtc1111AY.40.000017
ORF1ab/nsp2140L140FCtcTtc1111AY.430.000049
ORF1ab/nsp2140L140LctCctT1111AY.440.000067
ORF1ab/nsp2140L140FCtcTtc1111B.1.177.540.006671
ORF1ab/nsp2140L140FCtcTtc1111B.1.5960.000959
ORF1ab/nsp2140L140FCtcTtc1010B.1.10.000181
ORF1ab/nsp2140L140LctCctT1010B.1.5960.000871
ORF1ab/nsp2140L140FCtcTtc99AY.1190.000318
ORF1ab/nsp2140L140FCtcTtc99AY.270.000582
ORF1ab/nsp2140L140ICtcAtc99AY.430.00004
ORF1ab/nsp2140L140FCtcTtc99AY.440.000055
ORF1ab/nsp2140L140RcTccGc88AY.40.000012
ORF1ab/nsp2140L140FCtcTtc88B.1.36.260.022857
ORF1ab/nsp2140L140LctCctT77AY.1020.000186
ORF1ab/nsp2140L140LctCctT77AY.1210.000947
ORF1ab/nsp2140L140ICtcAtc77AY.570.004593
ORF1ab/nsp2140L140LctCctT77B.10.000064
ORF1ab/nsp2140L140LctCctT77B.1.1.5190.000278
ORF1ab/nsp2140L140FCtcTtc77B.1.5260.000165
ORF1ab/nsp2140L140RcTccGc77B.1.617.20.000026
ORF1ab/nsp2140L140FCtcTtc77P.10.00011
ORF1ab/nsp2140L140VCtcGtc66All0.000001
ORF1ab/nsp2140L140SCTCTCG36All0.000001
ORF1ab/nsp2140L140SCTCTCA26All0
ORF1ab/nsp2140L140SCTcTCc16All0
ORF1ab/nsp2140L140LctCctT66AY.1170.000507
ORF1ab/nsp2140L140ICtcAtc66B.10.000055
ORF1ab/nsp2140L140ICtcAtc66B.1.1.70.000005
ORF1ab/nsp2140L140RcTccGc66B.1.177.600.001311
ORF1ab/nsp2140L140LctCctT66B.1.36.270.00458
ORF1ab/nsp2140L140ICtcAtc66B.1.5250.000679
ORF1ab/nsp2140L140ICtcAtc55AE.80.002445
ORF1ab/nsp2140L140QcTCcAA35All0.000001
ORF1ab/nsp2140L140QcTCcAG25All0
ORF1ab/nsp2140L140RcTccGc55AY.1020.000133
ORF1ab/nsp2140L140FCtcTtc55AY.1080.005513
ORF1ab/nsp2140L140LctCctT55AY.1110.000916
ORF1ab/nsp2140L140RcTccGc55AY.46.60.000361
ORF1ab/nsp2140L140LctCctT55B.1.10.000091
ORF1ab/nsp2140L140LctCctT55B.1.1.2220.00102
ORF1ab/nsp2140L140delCTC---55B.1.1.330.002104
ORF1ab/nsp2140L140FCtcTtc55B.1.1.3740.011876
ORF1ab/nsp2140L140FCtcTtc55B.1.1.3980.016129
ORF1ab/nsp2140L140FCtcTtc55B.1.1770.000066
ORF1ab/nsp2140L140LctCctT55B.1.2410.004058
ORF1ab/nsp2140L140FCtcTtc55B.1.360.00073
ORF1ab/nsp2140L140ICtcAtc55B.1.617.20.000019
ORF1ab/nsp2140L140LctCctT55P.10.000079
ORF1ab/nsp2140L140FCtcTtc55P.1.100.001347
ORF1ab/nsp2140L140PcTCcCA240.111111
ORF1ab/nsp2140L140SCTCTCG240.111111
ORF1ab/nsp2140L140SCTCTCA240.111111
ORF1ab/nsp2140L140QcTCcAG240.111111
ORF1ab/nsp2140L140QcTCcAA240.111111
ORF1ab/nsp2140L140XCTCTAA240.111111
ORF1ab/nsp2140L140PcTCcCG240.111111
ORF1ab/nsp2140L140XCTCTAG240.111111
ORF1ab/nsp2140L140XCTCTAA24All0
ORF1ab/nsp2140L140XCTCTAG24All0
ORF1ab/nsp2140L140FCtcTtc44AY.260.000113
ORF1ab/nsp2140L140LctCctT44AY.390.000099
ORF1ab/nsp2140L140FCtcTtc44AY.46.60.000289
ORF1ab/nsp2140L140LctCctT44AZ.20.003284
ORF1ab/nsp2140L140delCTC---44B.1.1.70.000004
ORF1ab/nsp2140L140RcTccGc44B.1.1.70.000004
ORF1ab/nsp2140L140LctCctT44B.1.1770.000053
ORF1ab/nsp2140L140VCtcGtc44B.1.2430.000278
ORF1ab/nsp2140L140FCtcTtc44B.1.2580.000266
ORF1ab/nsp2140L140FCtcTtc44B.1.3510.000119
ORF1ab/nsp2140L140LctCctA24B.1.5260.000047
ORF1ab/nsp2140L140LctCctT24B.1.5260.000047
ORF1ab/nsp2140L140FCtcTtc44Q.10.000505
ORF1ab/nsp2140L140HcTCcAT230.111111
ORF1ab/nsp2140L140HcTccAc130.055556
ORF1ab/nsp2140L140LctCctT23AY.1030.000012
ORF1ab/nsp2140L140LctCctA13AY.1030.000006
ORF1ab/nsp2140L140LctCctT33AY.1140.000693
ORF1ab/nsp2140L140LctCctT33AY.200.000117
ORF1ab/nsp2140L140FCtcTtc33AY.290.000047
ORF1ab/nsp2140L140FCtcTtc33AY.390.000074
ORF1ab/nsp2140L140HcTccAc23AY.440.000012
ORF1ab/nsp2140L140HcTCcAT13AY.440.000006
ORF1ab/nsp2140L140LctCctT33AY.60.000123
ORF1ab/nsp2140L140FCtcTtc33AY.690.00056
ORF1ab/nsp2140L140delCTC---33B.1.1.3480.002389
ORF1ab/nsp2140L140FCtcTtc33B.1.1.3540.013158
ORF1ab/nsp2140L140LctCctT33B.1.2430.000209
ORF1ab/nsp2140L140LctCctT23B.1.3510.000059
ORF1ab/nsp2140L140LctCctA13B.1.3510.00003
ORF1ab/nsp2140L140FCtcTtc33B.1.36.170.001482
ORF1ab/nsp2140L140delCTC---33B.1.617.20.000011
ORF1ab/nsp2140L140LctCctT33D.20.000225
ORF1ab/nsp2140L140FCtcTtc33P.1.140.000143
ORF1ab/nsp2140L140LctCctT33P.1.140.000143
ORF1ab/nsp2140L140delCTC---220.111111
ORF1ab/nsp2140L140ACTcGCc22All0
ORF1ab/nsp2140L140LctCctT22AY.1000.000092
ORF1ab/nsp2140L140FCtcTtc22AY.1160.000574
ORF1ab/nsp2140L140LctCctT22AY.1190.000071
ORF1ab/nsp2140L140PcTccCc22AY.1190.000071
ORF1ab/nsp2140L140FCtcTtc22AY.340.000194
ORF1ab/nsp2140L140FCtcTtc22AY.4.20.000043
ORF1ab/nsp2140L140LctCctT22AY.4.2.10.000298
ORF1ab/nsp2140L140LctCctT22AY.410.000588
ORF1ab/nsp2140L140RcTccGc22AY.430.000009
ORF1ab/nsp2140L140delCTC---22AY.430.000009
ORF1ab/nsp2140L140FCtcTtc22AY.60.000082
ORF1ab/nsp2140L140LctCctT12AY.610.000105
ORF1ab/nsp2140L140LctCctA12AY.610.000105
ORF1ab/nsp2140L140LctCctT22AY.75.10.000361
ORF1ab/nsp2140L140LctCctT22AY.920.000575
ORF1ab/nsp2140L140FCtcTtc22AY.980.000158
ORF1ab/nsp2140L140RcTccGc22AY.98.10.000097
ORF1ab/nsp2140L140ICtcAtc22B.1.10.000036
ORF1ab/nsp2140L140FCtcTtc22B.1.1.280.000622
ORF1ab/nsp2140L140ICtcAtc22B.1.1.630.000772
ORF1ab/nsp2140L140PcTccCc22B.1.1.70.000002
ORF1ab/nsp2140L140FCtcTtc22B.1.1600.000062
ORF1ab/nsp2140L140FCtcTtc22B.1.2210.000142
ORF1ab/nsp2140L140FCtcTtc22B.1.2340.000264
ORF1ab/nsp2140L140FCtcTtc22B.1.2930.025
ORF1ab/nsp2140L140delCTC---22B.1.4290.000047
ORF1ab/nsp2140L140LctCctT22B.1.4290.000047
ORF1ab/nsp2140L140LctCctT22B.1.4970.00063
ORF1ab/nsp2140L140PcTccCc22B.1.5960.000174
ORF1ab/nsp2140L140LctCctT22B.1.6200.001892
ORF1ab/nsp2140L140delCTC---22N.60.014184
ORF1ab/nsp2140L140FCtcTtc22P.1.120.000968
ORF1ab/nsp2140L140ICtcAtc22P.1.40.001953
ORF1ab/nsp2140L140FCtcTtc22P.1.70.000639
ORF1ab/nsp2140L140delCTC---22P.20.000373
ORF1ab/nsp2140L140LctCctT22Q.40.00091
ORF1ab/nsp2140L140RcTccGc110.055556
ORF1ab/nsp2140L140FCtcTtc110.055556
ORF1ab/nsp2140L140LctCctT110.055556
ORF1ab/nsp2140L140FCtcTtc11A.20.000662
ORF1ab/nsp2140L140FCtcTtc11A.23.10.000704
ORF1ab/nsp2140L140CCTcTGc11All0
ORF1ab/nsp2140L140del1ctCct-11All0
ORF1ab/nsp2140L140LctCctT11AU.10.001266
ORF1ab/nsp2140L140FCtcTtc11AY.1000.000046
ORF1ab/nsp2140L140FCtcTtc11AY.1010.00049
ORF1ab/nsp2140L140del1ctCct-11AY.1030.000006
ORF1ab/nsp2140L140ICtcAtc11AY.1030.000006
ORF1ab/nsp2140L140FCtcTtc11AY.1130.000142
ORF1ab/nsp2140L140LctCctT11AY.1130.000142
ORF1ab/nsp2140L140FCtcTtc11AY.116.10.000311
ORF1ab/nsp2140L140LctCctT11AY.1200.000037
ORF1ab/nsp2140L140LctCctT11AY.160.00038
ORF1ab/nsp2140L140LctCctT11AY.16.10.00047
ORF1ab/nsp2140L140HcTccAc11AY.20.000356
ORF1ab/nsp2140L140FCtcTtc11AY.200.000039
ORF1ab/nsp2140L140delCTC---11AY.250.000006
ORF1ab/nsp2140L140LctCctT11AY.290.000016
ORF1ab/nsp2140L140FCtcTtc11AY.3.10.000085
ORF1ab/nsp2140L140ICtcAtc11AY.330.000067
ORF1ab/nsp2140L140FCtcTtc11AY.330.000067
ORF1ab/nsp2140L140ICtcAtc11AY.360.000148
ORF1ab/nsp2140L140LctCctT11AY.39.10.00004
ORF1ab/nsp2140L140delCTC---11AY.40.000002
ORF1ab/nsp2140L140LctCctT11AY.4.20.000022
ORF1ab/nsp2140L140ICtcAtc11AY.4.2.10.000149
ORF1ab/nsp2140L140FCtcTtc11AY.4.2.10.000149
ORF1ab/nsp2140L140FCtcTtc11AY.400.000964
ORF1ab/nsp2140L140SCTcTCc11AY.440.000006
ORF1ab/nsp2140L140LctCctT11AY.450.000122
ORF1ab/nsp2140L140FCtcTtc11AY.450.000122
ORF1ab/nsp2140L140FCtcTtc11AY.46.50.000198
ORF1ab/nsp2140L140LctCctA11AY.46.60.000072
ORF1ab/nsp2140L140LctCctA11AY.470.000031
ORF1ab/nsp2140L140PcTccCc11AY.470.000031
ORF1ab/nsp2140L140ICtcAtc11AY.470.000031
ORF1ab/nsp2140L140QcTCcAA11AY.470.000031
ORF1ab/nsp2140L140FCtcTtc11AY.50.000021
ORF1ab/nsp2140L140LctCctT11AY.540.000095
ORF1ab/nsp2140L140FCtcTtc11AY.540.000095
ORF1ab/nsp2140L140FCtcTtc11AY.570.000656
ORF1ab/nsp2140L140LctCctT11AY.590.00053
ORF1ab/nsp2140L140ICtcAtc11AY.610.000105
ORF1ab/nsp2140L140PcTccCc11AY.640.000595
ORF1ab/nsp2140L140LctCctT11AY.680.000274
ORF1ab/nsp2140L140ICtcAtc11AY.70.000196
ORF1ab/nsp2140L140FCtcTtc11AY.700.000209
ORF1ab/nsp2140L140LctCctT11AY.710.000475
ORF1ab/nsp2140L140FCtcTtc11AY.740.000116
ORF1ab/nsp2140L140FCtcTtc11AY.750.000056
ORF1ab/nsp2140L140LctCctT11AY.750.000056
ORF1ab/nsp2140L140FCtcTtc11AY.75.10.00018
ORF1ab/nsp2140L140delCTC---11AY.840.000437
ORF1ab/nsp2140L140FCtcTtc11AY.90.000068
ORF1ab/nsp2140L140LctCctT11AY.9.20.000037
ORF1ab/nsp2140L140LctCctT11AY.940.000443
ORF1ab/nsp2140L140SCTCTCG11AY.990.001049
ORF1ab/nsp2140L140LctCctA11AY.99.20.000092
ORF1ab/nsp2140L140HcTccAc11B.10.000009
ORF1ab/nsp2140L140PcTccCc11B.1.10.000018
ORF1ab/nsp2140L140LctCctT11B.1.1.10.000327
ORF1ab/nsp2140L140FCtcTtc11B.1.1.100.001115
ORF1ab/nsp2140L140LctCctT11B.1.1.100.001115
ORF1ab/nsp2140L140LctCctT11B.1.1.2140.000055
ORF1ab/nsp2140L140FCtcTtc11B.1.1.2430.004082
ORF1ab/nsp2140L140HcTccAc11B.1.1.250.000569
ORF1ab/nsp2140L140ICtcAtc11B.1.1.2750.011236
ORF1ab/nsp2140L140FCtcTtc11B.1.1.3180.000302
ORF1ab/nsp2140L140LctCctA11B.1.1.3180.000302
ORF1ab/nsp2140L140LctCctT11B.1.1.330.000421
ORF1ab/nsp2140L140VCtcGtc11B.1.1.370.000193
ORF1ab/nsp2140L140FCtcTtc11B.1.1.3760.005952
ORF1ab/nsp2140L140FCtcTtc11B.1.1.4090.002833
ORF1ab/nsp2140L140LctCctT11B.1.1.4160.000905
ORF1ab/nsp2140L140RcTccGc11B.1.1.5190.00004
ORF1ab/nsp2140L140LctCctT11B.1.1.610.008772
ORF1ab/nsp2140L140FCtcTtc11B.1.1.630.000386
ORF1ab/nsp2140L140FCtcTtc11B.1.160.270.015152
ORF1ab/nsp2140L140LctCctT11B.1.177.540.000606
ORF1ab/nsp2140L140LctCctT11B.1.177.60.000977
ORF1ab/nsp2140L140LctCctT11B.1.177.810.000189
ORF1ab/nsp2140L140FCtcTtc11B.1.177.860.000183
ORF1ab/nsp2140L140CCTcTGc11B.1.20.000009
ORF1ab/nsp2140L140delCTC---11B.1.20.000009
ORF1ab/nsp2140L140ICtcAtc11B.1.20.000009
ORF1ab/nsp2140L140HcTccAc11B.1.20.000009
ORF1ab/nsp2140L140LctCctT11B.1.2340.000132
ORF1ab/nsp2140L140ICtcAtc11B.1.2400.000216
ORF1ab/nsp2140L140FCtcTtc11B.1.2410.000812
ORF1ab/nsp2140L140LctCctT11B.1.2580.000067
ORF1ab/nsp2140L140LctCctT11B.1.258.170.000104
ORF1ab/nsp2140L140VCtcGtc11B.1.360.000146
ORF1ab/nsp2140L140PcTccCc11B.1.360.000146
ORF1ab/nsp2140L140ACTcGCc11B.1.360.000146
ORF1ab/nsp2140L140LctCctT11B.1.36.180.00042
ORF1ab/nsp2140L140FCtcTtc11B.1.36.290.000517
ORF1ab/nsp2140L140LctCctT11B.1.36.80.001
ORF1ab/nsp2140L140FCtcTtc11B.1.36.80.001
ORF1ab/nsp2140L140FCtcTtc11B.1.4000.000429
ORF1ab/nsp2140L140ACTcGCc11B.1.4160.001269
ORF1ab/nsp2140L140ICtcAtc11B.1.4160.001269
ORF1ab/nsp2140L140LctCctT11B.1.4560.003268
ORF1ab/nsp2140L140FCtcTtc11B.1.466.20.000391
ORF1ab/nsp2140L140LctCctT11B.1.466.20.000391
ORF1ab/nsp2140L140LctCctT11B.1.4680.005714
ORF1ab/nsp2140L140LctCctT11B.1.4710.002732
ORF1ab/nsp2140L140LctCctT11B.1.5410.004425
ORF1ab/nsp2140L140PcTccCc11B.1.5760.000907
ORF1ab/nsp2140L140FCtcTtc11B.1.5870.001898
ORF1ab/nsp2140L140FCtcTtc11B.1.5950.000261
ORF1ab/nsp2140L140RcTccGc11B.1.617.10.000129
ORF1ab/nsp2140L140FCtcTtc11B.1.6230.000536
ORF1ab/nsp2140L140FCtcTtc11B.1.930.000934
ORF1ab/nsp2140L140LctCctA11B.40.002208
ORF1ab/nsp2140L140ICtcAtc11B.550.00295
ORF1ab/nsp2140L140LctCctA11B.60.00091
ORF1ab/nsp2140L140ICtcAtc11B.60.00091
ORF1ab/nsp2140L140LctCctT11C.160.00106
ORF1ab/nsp2140L140LctCctT11C.360.000911
ORF1ab/nsp2140L140FCtcTtc11C.36.30.000567
ORF1ab/nsp2140L140LctCctT11C.370.000116
ORF1ab/nsp2140L140FCtcTtc11C.370.000116
ORF1ab/nsp2140L140RcTccGc11D.20.000075
ORF1ab/nsp2140L140PcTccCc11D.20.000075
ORF1ab/nsp2140L140delCTC---11N.40.004255
ORF1ab/nsp2140L140LctCctT11Z.10.00289