CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 136 | C136C | C316C | syn | tgC | tgT | 1315 | 1315 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136F | C316F | nonsyn | tGc | tTc | 515 | 513 | 0.996117 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136F | C316F | nonsyn | tGC | tTT | 515 | 2 | 0.0038835 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136G | C316G | nonsyn | Tgc | Ggc | 443 | 438 | 0.988713 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136G | C316G | nonsyn | TgC | GgT | 443 | 2 | 0.00451467 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136G | C316G | nonsyn | TgC | GgG | 443 | 2 | 0.00451467 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136G | C316G | nonsyn | TgC | GgA | 443 | 1 | 0.00225734 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136Y | C316Y | nonsyn | tGc | tAc | 284 | 284 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136R | C316R | nonsyn | Tgc | Cgc | 112 | 105 | 0.9375 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136R | C316R | nonsyn | TgC | CgA | 112 | 2 | 0.0178571 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136R | C316R | nonsyn | TgC | CgG | 112 | 2 | 0.0178571 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136R | C316R | nonsyn | TgC | AgA | 112 | 2 | 0.0178571 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136R | C316R | nonsyn | TgC | CgT | 112 | 1 | 0.00892857 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136S | C316S | nonsyn | Tgc | Agc | 91 | 68 | 0.747253 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136S | C316S | nonsyn | tGc | tCc | 91 | 20 | 0.21978 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136S | C316S | nonsyn | tGC | tCT | 91 | 1 | 0.010989 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136S | C316S | nonsyn | tGC | tCA | 91 | 1 | 0.010989 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136S | C316S | nonsyn | tGC | tCG | 91 | 1 | 0.010989 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136del | C316del | del | TGC | --- | 38 | 38 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136L | C316L | nonsyn | tGC | tTA | 14 | 4 | 0.285714 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136L | C316L | nonsyn | TGc | CTc | 14 | 4 | 0.285714 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136L | C316L | nonsyn | tGC | tTG | 14 | 3 | 0.214286 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136L | C316L | nonsyn | TGC | CTA | 14 | 2 | 0.142857 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136L | C316L | nonsyn | TGC | CTG | 14 | 1 | 0.0714286 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136W | C316W | nonsyn | tgC | tgG | 6 | 6 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136X | C316X | nonsyn | tgC | tgA | 6 | 6 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136del1 | C316del1 | del | tgC | tg- | 6 | 3 | 0.5 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136del1 | C316del1 | del | tGC | tA- | 6 | 2 | 0.333333 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136V | C316V | nonsyn | TGC | GTG | 6 | 2 | 0.333333 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136V | C316V | nonsyn | TGc | GTc | 6 | 2 | 0.333333 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136V | C316V | nonsyn | TGC | GTA | 6 | 1 | 0.166667 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136V | C316V | nonsyn | TGC | GTT | 6 | 1 | 0.166667 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136del1 | C316del1 | del | TGc | C-c | 6 | 1 | 0.166667 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136P | C316P | nonsyn | TGc | CCc | 5 | 2 | 0.4 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136P | C316P | nonsyn | TGC | CCG | 5 | 1 | 0.2 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136P | C316P | nonsyn | TGC | CCA | 5 | 1 | 0.2 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136P | C316P | nonsyn | TGC | CCT | 5 | 1 | 0.2 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136I | C316I | nonsyn | TGc | ATc | 3 | 2 | 0.666667 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136A | C316A | nonsyn | TGC | GCA | 3 | 1 | 0.333333 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136A | C316A | nonsyn | TGc | GCc | 3 | 1 | 0.333333 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136A | C316A | nonsyn | TGC | GCG | 3 | 1 | 0.333333 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136I | C316I | nonsyn | TGC | ATA | 3 | 1 | 0.333333 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136H | C316H | nonsyn | TGc | CAc | 2 | 2 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136Q | C316Q | nonsyn | TGC | CAA | 2 | 2 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136T | C316T | nonsyn | TGc | ACc | 1 | 1 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136N | C316N | nonsyn | TGc | AAc | 1 | 1 | 1 | 1211-1213 |
ORF1ab/nsp2 | 136 | C136del2 | C316del2 | del | tGC | t-- | 1 | 1 | 1 | 1211-1213 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1315 | 1315 | All | 0.000252 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 513 | 515 | All | 0.000098 |
ORF1ab/nsp2 | 136 | C136F | tGC | tTT | 2 | 515 | All | 0 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 438 | 443 | All | 0.000084 |
ORF1ab/nsp2 | 136 | C136G | TgC | GgG | 2 | 443 | All | 0 |
ORF1ab/nsp2 | 136 | C136G | TgC | GgT | 2 | 443 | All | 0 |
ORF1ab/nsp2 | 136 | C136G | TgC | GgA | 1 | 443 | All | 0 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 284 | 284 | All | 0.000054 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 276 | 276 | B.1.1.7 | 0.000247 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 222 | 222 | P.1 | 0.003497 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 176 | 176 | B.1.1.7 | 0.000158 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 174 | 174 | B.1.1.7 | 0.000156 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 105 | 112 | All | 0.00002 |
ORF1ab/nsp2 | 136 | C136R | TgC | CgG | 2 | 112 | All | 0 |
ORF1ab/nsp2 | 136 | C136R | TgC | AgA | 2 | 112 | All | 0 |
ORF1ab/nsp2 | 136 | C136R | TgC | CgA | 2 | 112 | All | 0 |
ORF1ab/nsp2 | 136 | C136R | TgC | CgT | 1 | 112 | All | 0 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 106 | 106 | AY.4 | 0.000165 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 68 | 91 | All | 0.000013 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 20 | 91 | All | 0.000004 |
ORF1ab/nsp2 | 136 | C136S | tGC | tCG | 1 | 91 | All | 0 |
ORF1ab/nsp2 | 136 | C136S | tGC | tCA | 1 | 91 | All | 0 |
ORF1ab/nsp2 | 136 | C136S | tGC | tCT | 1 | 91 | All | 0 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 90 | 90 | B.1.1.7 | 0.000081 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 80 | 80 | AY.20 | 0.003109 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 75 | 75 | B.1.617.2 | 0.000282 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 71 | 71 | AY.43 | 0.000315 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 57 | 57 | B.1.617.2 | 0.000215 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 54 | 54 | AE.5 | 1 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 45 | 45 | AY.44 | 0.000274 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 45 | 45 | B.1.617.2 | 0.000169 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 40 | 40 | AY.43 | 0.000177 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 38 | 38 | All | 0.000007 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 35 | 35 | AY.4 | 0.000054 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 34 | 34 | B.1.526 | 0.000799 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 31 | 31 | B.1.118 | 0.208054 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 31 | 31 | B.1.236 | 0.063655 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 27 | 29 | B.1 | 0.000247 |
ORF1ab/nsp2 | 136 | C136G | TgC | GgT | 1 | 29 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136G | TgC | GgG | 1 | 29 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 24 | 27 | B.1.1.7 | 0.000021 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 3 | 27 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 24 | 24 | AY.43 | 0.000106 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 23 | 23 | B.1.1.519 | 0.000913 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 23 | 23 | B.1.2 | 0.000203 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 22 | 22 | B.1.425 | 0.065868 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 21 | 21 | B.1.3 | 0.054974 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 20 | 20 | B.1.427 | 0.00101 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 15 | 15 | AY.3 | 0.000149 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 15 | 15 | AY.60 | 0.014071 |
ORF1ab/nsp2 | 136 | C136L | TGc | CTc | 4 | 14 | All | 0.000001 |
ORF1ab/nsp2 | 136 | C136L | tGC | tTA | 4 | 14 | All | 0.000001 |
ORF1ab/nsp2 | 136 | C136L | tGC | tTG | 3 | 14 | All | 0.000001 |
ORF1ab/nsp2 | 136 | C136L | TGC | CTA | 2 | 14 | All | 0 |
ORF1ab/nsp2 | 136 | C136L | TGC | CTG | 1 | 14 | All | 0 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 14 | 14 | AY.5.4 | 0.003874 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 13 | 13 | B.1.1.58 | 0.069892 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 12 | 13 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 136 | C136R | TgC | AgA | 1 | 13 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 12 | 12 | B.1.561 | 0.004764 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 10 | 10 | AY.75 | 0.00056 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 10 | 10 | B.1.526 | 0.000235 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 10 | 10 | R.1 | 0.0009 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 9 | 9 | AY.115 | 0.046875 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 9 | 9 | AY.37 | 0.002845 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 9 | 9 | B.1.1.519 | 0.000357 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp2 | 136 | C136L | tGC | tTA | 2 | 8 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136L | TGC | CTA | 2 | 8 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136L | TGc | CTc | 2 | 8 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136L | TGC | CTG | 1 | 8 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136L | tGC | tTG | 1 | 8 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 8 | 8 | AY.116 | 0.002294 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 8 | 8 | B.1.596 | 0.000697 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 7 | 7 | B.1.438.1 | 0.000751 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 7 | 7 | B.1.517 | 0.002989 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 7 | 7 | B.1.575 | 0.002124 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 7 | 7 | B.1.589 | 0.05303 |
ORF1ab/nsp2 | 136 | C136R | TgC | CgA | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136R | TgC | AgA | 1 | 6 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136R | TgC | CgG | 1 | 6 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 6 | 6 | A.2 | 0.003971 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 6 | 6 | A.2.5.2 | 0.009434 |
ORF1ab/nsp2 | 136 | C136W | tgC | tgG | 6 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 136 | C136X | tgC | tgA | 6 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 136 | C136del1 | tgC | tg- | 3 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 136 | C136del1 | tGC | tA- | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 136 | C136V | TGC | GTG | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 136 | C136V | TGc | GTc | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 136 | C136V | TGC | GTT | 1 | 6 | All | 0 |
ORF1ab/nsp2 | 136 | C136V | TGC | GTA | 1 | 6 | All | 0 |
ORF1ab/nsp2 | 136 | C136del1 | TGc | C-c | 1 | 6 | All | 0 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 6 | 6 | AY.102 | 0.000159 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp2 | 136 | C136F | tGC | tTT | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 2 | 5 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136S | tGC | tCG | 1 | 5 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136S | tGC | tCA | 1 | 5 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 5 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136P | TGc | CCc | 2 | 5 | All | 0 |
ORF1ab/nsp2 | 136 | C136P | TGC | CCG | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 136 | C136P | TGC | CCA | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 136 | C136P | TGC | CCT | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 3 | 5 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 136 | C136S | tGC | tCT | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 4 | 4 | AY.66 | 0.004278 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 4 | 4 | B.58 | 0.040816 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 3 | 3 | 0.166667 | |
ORF1ab/nsp2 | 136 | C136G | TgC | GgG | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136V | TGC | GTG | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136A | TGc | GCc | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136P | TGC | CCA | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136V | TGC | GTA | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136G | TgC | GgA | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136P | TGc | CCc | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136A | TGC | GCG | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136P | TGC | CCG | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136A | TGC | GCA | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136V | TGc | GTc | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | A.2.5.2 | 0.004717 |
ORF1ab/nsp2 | 136 | C136I | TGc | ATc | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 136 | C136A | TGc | GCc | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 136 | C136A | TGC | GCG | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 136 | C136A | TGC | GCA | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 136 | C136I | TGC | ATA | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 136 | C136R | TgC | CgT | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | AY.53 | 0.000863 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp2 | 136 | C136V | TGc | GTc | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136V | TGC | GTG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136V | TGC | GTT | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 3 | 3 | B.1.177.35 | 0.002073 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | B.51 | 0.142857 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | P.1.17.1 | 0.002625 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 136 | C136H | TGc | CAc | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136Q | TGC | CAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136X | tgC | tgA | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 136 | C136I | TGc | ATc | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136I | TGC | ATA | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp2 | 136 | C136H | TGc | CAc | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 136 | C136Q | TGC | CAA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 136 | C136R | TgC | CgG | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 136 | C136P | TGc | CCc | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 136 | C136P | TGC | CCT | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 2 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp2 | 136 | C136W | tgC | tgG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 136 | C136del1 | TGc | C-c | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 136 | C136del1 | tGC | tA- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | B.1.617.3 | 0.00597 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 136 | C136W | tgC | tgG | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 136 | C136T | TGc | ACc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 136 | C136N | TGc | AAc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 136 | C136del2 | tGC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 136 | C136X | tgC | tgA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 136 | C136L | tGC | tTA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 136 | C136W | tgC | tgG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 136 | C136L | tGC | tTG | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 136 | C136del1 | tgC | tg- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 136 | C136L | TGc | CTc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 136 | C136X | tgC | tgA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 136 | C136del1 | tGC | tA- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 136 | C136T | TGc | ACc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 136 | C136G | TgC | GgT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 136 | C136W | tgC | tgG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136X | tgC | tgA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136del1 | tgC | tg- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136L | tGC | tTG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 136 | C136I | TGc | ATc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 136 | C136N | TGc | AAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.132 | 0.014925 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp2 | 136 | C136F | tGC | tTT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.461 | 0.012048 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp2 | 136 | C136X | tgC | tgA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp2 | 136 | C136L | TGc | CTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 136 | C136del1 | tgC | tg- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 136 | C136W | tgC | tgG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 136 | C136S | tGc | tCc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 136 | C136S | Tgc | Agc | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.504 | 0.03125 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 136 | C136L | tGC | tTA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 136 | C136del2 | tGC | t-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | B.4.5 | 0.011905 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 136 | C136G | Tgc | Ggc | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 136 | C136R | Tgc | Cgc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 136 | C136del | TGC | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 136 | C136C | tgC | tgT | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp2 | 136 | C136Y | tGc | tAc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 136 | C136F | tGc | tTc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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