CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 133

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2133N133NN313NsynaaCaaT85685611202-1204
ORF1ab/nsp2133N133DN313DnonsynAacGac21121111202-1204
ORF1ab/nsp2133N133KN313KnonsynaaCaaA1611560.9689441202-1204
ORF1ab/nsp2133N133KN313KnonsynaaCaaG16150.03105591202-1204
ORF1ab/nsp2133N133YN313YnonsynAacTac10310311202-1204
ORF1ab/nsp2133N133SN313SnonsynaAcaGc10110111202-1204
ORF1ab/nsp2133N133HN313HnonsynAacCac44430.9772731202-1204
ORF1ab/nsp2133N133HN313HnonsynAaCCaT4410.02272731202-1204
ORF1ab/nsp2133N133delN313deldelAAC---313111202-1204
ORF1ab/nsp2133N133TN313TnonsynaAcaCc760.8571431202-1204
ORF1ab/nsp2133N133TN313TnonsynaACaCA710.1428571202-1204
ORF1ab/nsp2133N133GN313GnonsynAACGGA3311202-1204
ORF1ab/nsp2133N133RN313RnonsynaACaGA2211202-1204
ORF1ab/nsp2133N133QN313QnonsynAaCCaA2211202-1204
ORF1ab/nsp2133N133PN313PnonsynAACCCA210.51202-1204
ORF1ab/nsp2133N133PN313PnonsynAAcCCc210.51202-1204
ORF1ab/nsp2133N133XN313XnonsynAaCTaA1111202-1204
ORF1ab/nsp2133N133del1N313del1delAac-ac1111202-1204
ORF1ab/nsp2133N133IN313InonsynaAcaTc1111202-1204

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2133N133NaaCaaT856856All0.000164
ORF1ab/nsp2133N133DAacGac211211All0.00004
ORF1ab/nsp2133N133NaaCaaT206206AY.40.000321
ORF1ab/nsp2133N133KaaCaaA156161All0.00003
ORF1ab/nsp2133N133KaaCaaG5161All0.000001
ORF1ab/nsp2133N133YAacTac103103All0.00002
ORF1ab/nsp2133N133SaAcaGc101101All0.000019
ORF1ab/nsp2133N133NaaCaaT8080P.10.00126
ORF1ab/nsp2133N133YAacTac6767B.1.1.70.00006
ORF1ab/nsp2133N133NaaCaaT6666B.1.1.70.000059
ORF1ab/nsp2133N133DAacGac6666B.1.1640.985075
ORF1ab/nsp2133N133NaaCaaT6666B.1.20.000581
ORF1ab/nsp2133N133NaaCaaT4848B.1.3910.054115
ORF1ab/nsp2133N133HAacCac4344All0.000008
ORF1ab/nsp2133N133HAaCCaT144All0
ORF1ab/nsp2133N133SaAcaGc3636AY.40.000056
ORF1ab/nsp2133N133DAacGac3636B.1.1.70.000032
ORF1ab/nsp2133N133NaaCaaT3535B.1.1770.000461
ORF1ab/nsp2133N133DAacGac3333B.1.466.20.012911
ORF1ab/nsp2133N133NaaCaaT3333B.1.617.20.000124
ORF1ab/nsp2133N133delAAC---3131All0.000006
ORF1ab/nsp2133N133HAacCac2727AY.40.000042
ORF1ab/nsp2133N133KaaCaaA2727AY.440.000164
ORF1ab/nsp2133N133NaaCaaT2323AY.430.000102
ORF1ab/nsp2133N133NaaCaaT2323B.1.1.3150.194915
ORF1ab/nsp2133N133SaAcaGc2222AY.1030.000137
ORF1ab/nsp2133N133NaaCaaT2121AY.1030.00013
ORF1ab/nsp2133N133KaaCaaA2121AY.460.002186
ORF1ab/nsp2133N133KaaCaaA2121AY.46.60.001516
ORF1ab/nsp2133N133NaaCaaT2020AY.30.000199
ORF1ab/nsp2133N133NaaCaaT1919AY.250.000114
ORF1ab/nsp2133N133NaaCaaT1919B.10.000174
ORF1ab/nsp2133N133NaaCaaT1717AY.440.000103
ORF1ab/nsp2133N133DAacGac1717B.1.1.4200.017103
ORF1ab/nsp2133N133DAacGac1616AY.40.000025
ORF1ab/nsp2133N133KaaCaaA1213B.1.1.70.000011
ORF1ab/nsp2133N133KaaCaaG113B.1.1.70.000001
ORF1ab/nsp2133N133KaaCaaA1313B.1.4700.018258
ORF1ab/nsp2133N133KaaCaaA1313B.1.617.20.000049
ORF1ab/nsp2133N133SaAcaGc1212B.1.20.000106
ORF1ab/nsp2133N133NaaCaaT1212B.1.4270.000606
ORF1ab/nsp2133N133KaaCaaA1111B.1.1.3060.004822
ORF1ab/nsp2133N133NaaCaaT1010AY.1100.001127
ORF1ab/nsp2133N133DAacGac1010B.1.10.000181
ORF1ab/nsp2133N133NaaCaaT88AY.1020.000212
ORF1ab/nsp2133N133TaAcaCc67All0.000001
ORF1ab/nsp2133N133TaACaCA17All0
ORF1ab/nsp2133N133DAacGac77AY.250.000042
ORF1ab/nsp2133N133NaaCaaT77AY.260.000198
ORF1ab/nsp2133N133NaaCaaT77AY.290.00011
ORF1ab/nsp2133N133NaaCaaT77B.1.177.150.004416
ORF1ab/nsp2133N133NaaCaaT66AY.1190.000212
ORF1ab/nsp2133N133KaaCaaA66AY.40.000009
ORF1ab/nsp2133N133YAacTac66B.1.1.10.00196
ORF1ab/nsp2133N133NaaCaaT66B.1.1600.000187
ORF1ab/nsp2133N133YAacTac66B.1.2210.000426
ORF1ab/nsp2133N133NaaCaaT66B.1.3510.000178
ORF1ab/nsp2133N133NaaCaaT55AY.1200.000186
ORF1ab/nsp2133N133NaaCaaT55AY.390.000124
ORF1ab/nsp2133N133YAacTac55B.10.000046
ORF1ab/nsp2133N133delAAC---55B.1.1.330.002104
ORF1ab/nsp2133N133HAacCac55B.1.1.70.000004
ORF1ab/nsp2133N133SaAcaGc55B.1.1.70.000004
ORF1ab/nsp2133N133delAAC---55B.1.1.70.000004
ORF1ab/nsp2133N133NaaCaaT55B.1.177.80.003762
ORF1ab/nsp2133N133NaaCaaT55P.1.120.00242
ORF1ab/nsp2133N133NaaCaaT55P.1.140.000239
ORF1ab/nsp2133N133KaaCaaG240.111111
ORF1ab/nsp2133N133KaaCaaA240.111111
ORF1ab/nsp2133N133NaaCaaT44AY.200.000155
ORF1ab/nsp2133N133TaAcaCc34AY.440.000018
ORF1ab/nsp2133N133TaACaCA14AY.440.000006
ORF1ab/nsp2133N133DAacGac44AY.50.000083
ORF1ab/nsp2133N133DAacGac44B.1.617.20.000015
ORF1ab/nsp2133N133NaaCaaT44Q.10.000505
ORF1ab/nsp2133N133GAACGGA33All0.000001
ORF1ab/nsp2133N133NaaCaaT33AY.120.000948
ORF1ab/nsp2133N133KaaCaaA33AY.1210.000406
ORF1ab/nsp2133N133DAacGac33AY.360.000445
ORF1ab/nsp2133N133NaaCaaT33AY.4.20.000065
ORF1ab/nsp2133N133YAacTac33AY.440.000018
ORF1ab/nsp2133N133NaaCaaT33AY.50.000062
ORF1ab/nsp2133N133NaaCaaT33AY.75.10.000541
ORF1ab/nsp2133N133DAacGac33B.10.000027
ORF1ab/nsp2133N133KaaCaaA33B.10.000027
ORF1ab/nsp2133N133delAAC---33B.1.1.3480.002389
ORF1ab/nsp2133N133NaaCaaT33B.1.5820.001472
ORF1ab/nsp2133N133RaACaGA220.111111
ORF1ab/nsp2133N133QAaCCaA22All0
ORF1ab/nsp2133N133RaACaGA22All0
ORF1ab/nsp2133N133PAACCCA12All0
ORF1ab/nsp2133N133PAAcCCc12All0
ORF1ab/nsp2133N133KaaCaaA22AY.1020.000053
ORF1ab/nsp2133N133KaaCaaA22AY.1030.000012
ORF1ab/nsp2133N133NaaCaaT22AY.1050.001286
ORF1ab/nsp2133N133YAacTac22AY.1180.000125
ORF1ab/nsp2133N133NaaCaaT22AY.29.10.000441
ORF1ab/nsp2133N133NaaCaaT22AY.39.10.000079
ORF1ab/nsp2133N133delAAC---22AY.40.000003
ORF1ab/nsp2133N133YAacTac22AY.40.000003
ORF1ab/nsp2133N133PAACCCA12AY.440.000006
ORF1ab/nsp2133N133PAAcCCc12AY.440.000006
ORF1ab/nsp2133N133SaAcaGc22AY.46.60.000144
ORF1ab/nsp2133N133SaAcaGc22AY.5.30.000675
ORF1ab/nsp2133N133NaaCaaT22AY.98.10.000097
ORF1ab/nsp2133N133YAacTac22B.1.10.000036
ORF1ab/nsp2133N133SaAcaGc22B.1.1.1280.014184
ORF1ab/nsp2133N133SaAcaGc22B.1.1.2910.001485
ORF1ab/nsp2133N133YAacTac22B.1.1.3260.003521
ORF1ab/nsp2133N133SaAcaGc22B.1.1.370.000386
ORF1ab/nsp2133N133NaaCaaT22B.1.1.700.000682
ORF1ab/nsp2133N133HAacCac22B.1.1770.000026
ORF1ab/nsp2133N133KaaCaaA22B.1.177.810.000379
ORF1ab/nsp2133N133KaaCaaA22B.1.20.000018
ORF1ab/nsp2133N133NaaCaaT22B.1.2320.001075
ORF1ab/nsp2133N133NaaCaaT22B.1.2340.000264
ORF1ab/nsp2133N133SaAcaGc22B.1.36.290.001035
ORF1ab/nsp2133N133delAAC---22B.1.4290.000047
ORF1ab/nsp2133N133delAAC---22N.60.014184
ORF1ab/nsp2133N133delAAC---22P.20.000373
ORF1ab/nsp2133N133NaaCaaT22Q.80.00033
ORF1ab/nsp2133N133YAacTac110.055556
ORF1ab/nsp2133N133NaaCaaT110.055556
ORF1ab/nsp2133N133QAaCCaA110.055556
ORF1ab/nsp2133N133XAaCTaA110.055556
ORF1ab/nsp2133N133HAacCac110.055556
ORF1ab/nsp2133N133NaaCaaT11A.10.000282
ORF1ab/nsp2133N133NaaCaaT11A.2.40.003367
ORF1ab/nsp2133N133XAaCTaA11All0
ORF1ab/nsp2133N133del1Aac-ac11All0
ORF1ab/nsp2133N133IaAcaTc11All0
ORF1ab/nsp2133N133NaaCaaT11AT.10.005128
ORF1ab/nsp2133N133YAacTac11AY.1000.000046
ORF1ab/nsp2133N133DAacGac11AY.1000.000046
ORF1ab/nsp2133N133NaaCaaT11AY.1080.001103
ORF1ab/nsp2133N133KaaCaaA11AY.1130.000142
ORF1ab/nsp2133N133NaaCaaT11AY.1170.000085
ORF1ab/nsp2133N133KaaCaaA11AY.1180.000063
ORF1ab/nsp2133N133NaaCaaT11AY.1180.000063
ORF1ab/nsp2133N133IaAcaTc11AY.1190.000035
ORF1ab/nsp2133N133SaAcaGc11AY.1190.000035
ORF1ab/nsp2133N133KaaCaaA11AY.20.000356
ORF1ab/nsp2133N133KaaCaaA11AY.230.00007
ORF1ab/nsp2133N133NaaCaaT11AY.230.00007
ORF1ab/nsp2133N133YAacTac11AY.250.000006
ORF1ab/nsp2133N133TaAcaCc11AY.250.000006
ORF1ab/nsp2133N133KaaCaaG11AY.260.000028
ORF1ab/nsp2133N133DAacGac11AY.260.000028
ORF1ab/nsp2133N133NaaCaaT11AY.270.000065
ORF1ab/nsp2133N133YAacTac11AY.290.000016
ORF1ab/nsp2133N133SaAcaGc11AY.29.10.000221
ORF1ab/nsp2133N133delAAC---11AY.30.00001
ORF1ab/nsp2133N133DAacGac11AY.390.000025
ORF1ab/nsp2133N133YAacTac11AY.390.000025
ORF1ab/nsp2133N133DAacGac11AY.39.20.001541
ORF1ab/nsp2133N133NaaCaaT11AY.4.10.000737
ORF1ab/nsp2133N133HAacCac11AY.400.000964
ORF1ab/nsp2133N133YAacTac11AY.400.000964
ORF1ab/nsp2133N133SaAcaGc11AY.420.00004
ORF1ab/nsp2133N133delAAC---11AY.430.000004
ORF1ab/nsp2133N133del1Aac-ac11AY.440.000006
ORF1ab/nsp2133N133delAAC---11AY.440.000006
ORF1ab/nsp2133N133DAacGac11AY.440.000006
ORF1ab/nsp2133N133SaAcaGc11AY.440.000006
ORF1ab/nsp2133N133HAacCac11AY.440.000006
ORF1ab/nsp2133N133QAaCCaA11AY.440.000006
ORF1ab/nsp2133N133HAacCac11AY.450.000122
ORF1ab/nsp2133N133NaaCaaT11AY.450.000122
ORF1ab/nsp2133N133NaaCaaT11AY.460.000104
ORF1ab/nsp2133N133NaaCaaT11AY.46.20.000635
ORF1ab/nsp2133N133KaaCaaG11AY.470.000031
ORF1ab/nsp2133N133NaaCaaT11AY.470.000031
ORF1ab/nsp2133N133KaaCaaA11AY.560.001605
ORF1ab/nsp2133N133KaaCaaA11AY.60.000041
ORF1ab/nsp2133N133KaaCaaA11AY.600.000938
ORF1ab/nsp2133N133delAAC---11AY.620.000436
ORF1ab/nsp2133N133SaAcaGc11AY.680.000274
ORF1ab/nsp2133N133delAAC---11AY.710.000475
ORF1ab/nsp2133N133SaAcaGc11AY.740.000116
ORF1ab/nsp2133N133DAacGac11AY.750.000056
ORF1ab/nsp2133N133NaaCaaT11AY.770.001127
ORF1ab/nsp2133N133DAacGac11AY.80.000606
ORF1ab/nsp2133N133GAACGGA11AY.840.000437
ORF1ab/nsp2133N133delAAC---11AY.990.001049
ORF1ab/nsp2133N133delAAC---11B.10.000009
ORF1ab/nsp2133N133TaAcaCc11B.10.000009
ORF1ab/nsp2133N133NaaCaaT11B.1.1.2140.000055
ORF1ab/nsp2133N133NaaCaaT11B.1.1.2190.005
ORF1ab/nsp2133N133KaaCaaA11B.1.1.2430.004082
ORF1ab/nsp2133N133DAacGac11B.1.1.250.000569
ORF1ab/nsp2133N133NaaCaaT11B.1.1.2910.000742
ORF1ab/nsp2133N133HAaCCaT11B.1.1.3060.000438
ORF1ab/nsp2133N133NaaCaaT11B.1.1.3260.001761
ORF1ab/nsp2133N133NaaCaaT11B.1.1.330.000421
ORF1ab/nsp2133N133SaAcaGc11B.1.1.3330.001076
ORF1ab/nsp2133N133NaaCaaT11B.1.1.3360.016667
ORF1ab/nsp2133N133NaaCaaT11B.1.1.390.00051
ORF1ab/nsp2133N133NaaCaaT11B.1.1.4130.006897
ORF1ab/nsp2133N133KaaCaaA11B.1.1.5190.00004
ORF1ab/nsp2133N133SaAcaGc11B.1.1.5190.00004
ORF1ab/nsp2133N133NaaCaaT11B.1.1.630.000386
ORF1ab/nsp2133N133TaAcaCc11B.1.1.70.000001
ORF1ab/nsp2133N133NaaCaaT11B.1.110.30.000718
ORF1ab/nsp2133N133NaaCaaT11B.1.1190.010526
ORF1ab/nsp2133N133NaaCaaT11B.1.1430.021277
ORF1ab/nsp2133N133SaAcaGc11B.1.1770.000013
ORF1ab/nsp2133N133DAacGac11B.1.1770.000013
ORF1ab/nsp2133N133NaaCaaT11B.1.177.460.000918
ORF1ab/nsp2133N133NaaCaaT11B.1.177.540.000606
ORF1ab/nsp2133N133NaaCaaT11B.1.177.70.000165
ORF1ab/nsp2133N133GAACGGA11B.1.177.830.001481
ORF1ab/nsp2133N133NaaCaaT11B.1.177.860.000183
ORF1ab/nsp2133N133delAAC---11B.1.20.000009
ORF1ab/nsp2133N133YAacTac11B.1.20.000009
ORF1ab/nsp2133N133KaaCaaA11B.1.2210.000071
ORF1ab/nsp2133N133NaaCaaT11B.1.230.006061
ORF1ab/nsp2133N133KaaCaaA11B.1.2390.001221
ORF1ab/nsp2133N133NaaCaaT11B.1.2430.00007
ORF1ab/nsp2133N133NaaCaaT11B.1.258.70.001912
ORF1ab/nsp2133N133NaaCaaT11B.1.3110.000275
ORF1ab/nsp2133N133SaAcaGc11B.1.351.50.0006
ORF1ab/nsp2133N133NaaCaaT11B.1.4000.000429
ORF1ab/nsp2133N133DAacGac11B.1.416.10.001563
ORF1ab/nsp2133N133KaaCaaA11B.1.4270.00005
ORF1ab/nsp2133N133SaAcaGc11B.1.4290.000024
ORF1ab/nsp2133N133HAacCac11B.1.4290.000024
ORF1ab/nsp2133N133NaaCaaT11B.1.4560.003268
ORF1ab/nsp2133N133NaaCaaT11B.1.4590.004082
ORF1ab/nsp2133N133YAacTac11B.1.466.20.000391
ORF1ab/nsp2133N133NaaCaaT11B.1.5230.002451
ORF1ab/nsp2133N133HAacCac11B.1.5250.000113
ORF1ab/nsp2133N133KaaCaaA11B.1.5380.008065
ORF1ab/nsp2133N133NaaCaaT11B.1.5600.00463
ORF1ab/nsp2133N133NaaCaaT11B.1.5760.000907
ORF1ab/nsp2133N133SaAcaGc11B.1.5770.000687
ORF1ab/nsp2133N133KaaCaaA11B.1.5770.000687
ORF1ab/nsp2133N133HAacCac11B.1.5960.000087
ORF1ab/nsp2133N133SaAcaGc11B.1.617.20.000004
ORF1ab/nsp2133N133GAACGGA11B.1.617.20.000004
ORF1ab/nsp2133N133delAAC---11B.1.617.20.000004
ORF1ab/nsp2133N133DAacGac11B.1.6200.000946
ORF1ab/nsp2133N133NaaCaaT11B.1.6210.000089
ORF1ab/nsp2133N133NaaCaaT11B.1.621.10.000506
ORF1ab/nsp2133N133HAacCac11B.1.6370.000073
ORF1ab/nsp2133N133KaaCaaA11B.1.6370.000073
ORF1ab/nsp2133N133NaaCaaT11B.390.002331
ORF1ab/nsp2133N133SaAcaGc11C.160.00106
ORF1ab/nsp2133N133NaaCaaT11C.350.000774
ORF1ab/nsp2133N133NaaCaaT11D.20.000075
ORF1ab/nsp2133N133delAAC---11N.40.004255
ORF1ab/nsp2133N133DAacGac11P.10.000016
ORF1ab/nsp2133N133KaaCaaA11P.10.000016
ORF1ab/nsp2133N133HAacCac11P.1.10.000318
ORF1ab/nsp2133N133NaaCaaT11R.10.00009