CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 122 & Codon = tAt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2122S122YS302YnonsyntCttAt636311169-1171

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2122S122YtCttAt6363All0.000012
ORF1ab/nsp2122S122YtCttAt99AY.250.000054
ORF1ab/nsp2122S122YtCttAt66B.1.617.20.000023
ORF1ab/nsp2122S122YtCttAt55AY.1020.000133
ORF1ab/nsp2122S122YtCttAt55AY.9.10.000419
ORF1ab/nsp2122S122YtCttAt44B.1.1.70.000004
ORF1ab/nsp2122S122YtCttAt33B.10.000027
ORF1ab/nsp2122S122YtCttAt33B.1.10.000054
ORF1ab/nsp2122S122YtCttAt33B.1.6090.001438
ORF1ab/nsp2122S122YtCttAt22AY.1000.000092
ORF1ab/nsp2122S122YtCttAt22AY.1170.000169
ORF1ab/nsp2122S122YtCttAt22AY.40.000003
ORF1ab/nsp2122S122YtCttAt22AY.46.40.000329
ORF1ab/nsp2122S122YtCttAt22AY.790.002421
ORF1ab/nsp2122S122YtCttAt22B.1.2580.000133
ORF1ab/nsp2122S122YtCttAt11AY.1030.000006
ORF1ab/nsp2122S122YtCttAt11AY.200.000039
ORF1ab/nsp2122S122YtCttAt11AY.230.00007
ORF1ab/nsp2122S122YtCttAt11AY.260.000028
ORF1ab/nsp2122S122YtCttAt11AY.30.00001
ORF1ab/nsp2122S122YtCttAt11AY.390.000025
ORF1ab/nsp2122S122YtCttAt11AY.430.000004
ORF1ab/nsp2122S122YtCttAt11AY.440.000006
ORF1ab/nsp2122S122YtCttAt11B.1.1770.000013
ORF1ab/nsp2122S122YtCttAt11B.1.2210.000071
ORF1ab/nsp2122S122YtCttAt11B.1.258.170.000104
ORF1ab/nsp2122S122YtCttAt11B.1.617.10.000129
ORF1ab/nsp2122S122YtCttAt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.