CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 122 | S122F | S302F | nonsyn | tCt | tTt | 4872 | 4871 | 0.999795 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122F | S302F | nonsyn | tCT | tTC | 4872 | 1 | 0.000205255 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122S | S302S | syn | tcT | tcC | 1373 | 1330 | 0.968682 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122S | S302S | syn | tcT | tcG | 1373 | 39 | 0.028405 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122S | S302S | syn | tcT | tcA | 1373 | 3 | 0.002185 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122S | S302S | syn | TCT | AGC | 1373 | 1 | 0.000728332 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122P | S302P | nonsyn | Tct | Cct | 220 | 218 | 0.990909 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122P | S302P | nonsyn | TcT | CcC | 220 | 2 | 0.00909091 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122Y | S302Y | nonsyn | tCt | tAt | 63 | 63 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122A | S302A | nonsyn | Tct | Gct | 38 | 38 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122del | S302del | del | TCT | --- | 31 | 31 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122T | S302T | nonsyn | Tct | Act | 11 | 11 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122C | S302C | nonsyn | tCt | tGt | 4 | 4 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122del1 | S302del1 | del | tCt | t-t | 4 | 3 | 0.75 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122del1 | S302del1 | del | tcT | tc- | 4 | 1 | 0.25 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122H | S302H | nonsyn | TCt | CAt | 2 | 2 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122V | S302V | nonsyn | TCT | GTG | 2 | 1 | 0.5 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122V | S302V | nonsyn | TCT | GTC | 2 | 1 | 0.5 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122G | S302G | nonsyn | TCT | GGG | 2 | 1 | 0.5 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122G | S302G | nonsyn | TCT | GGC | 2 | 1 | 0.5 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122R | S302R | nonsyn | TCT | AGG | 1 | 1 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122I | S302I | nonsyn | TCT | ATC | 1 | 1 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122M | S302M | nonsyn | TCT | ATG | 1 | 1 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122W | S302W | nonsyn | tCT | tGG | 1 | 1 | 1 | 1169-1171 |
ORF1ab/nsp2 | 122 | S122D | S302D | nonsyn | TCt | GAt | 1 | 1 | 1 | 1169-1171 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4871 | 4872 | All | 0.000932 |
ORF1ab/nsp2 | 122 | S122F | tCT | tTC | 1 | 4872 | All | 0 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1330 | 1373 | All | 0.000254 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 39 | 1373 | All | 0.000007 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcA | 3 | 1373 | All | 0.000001 |
ORF1ab/nsp2 | 122 | S122S | TCT | AGC | 1 | 1373 | All | 0 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 976 | 976 | B.1.375 | 0.8 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 724 | 724 | B.1.1.7 | 0.000648 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 462 | 462 | AY.4 | 0.000719 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 299 | 299 | AY.106 | 0.100134 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 290 | 290 | AY.44 | 0.001765 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 218 | 220 | All | 0.000042 |
ORF1ab/nsp2 | 122 | S122P | TcT | CcC | 2 | 220 | All | 0 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 220 | 220 | B.1.2 | 0.001937 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 201 | 201 | B.1.36 | 0.029326 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 174 | 174 | AY.43 | 0.000771 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 160 | 160 | B.1 | 0.001466 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 157 | 157 | B.1.1.1 | 0.05129 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 134 | 134 | B.1.617.2 | 0.000505 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 113 | 113 | B.1.1 | 0.00205 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 110 | 110 | AY.47 | 0.003422 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 106 | 106 | B.1.177 | 0.001396 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 103 | 103 | AY.103 | 0.00064 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 97 | 97 | AY.4.2 | 0.002104 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 92 | 92 | AY.25 | 0.000553 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 89 | 89 | AY.3 | 0.000885 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 89 | 89 | AY.42 | 0.00358 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 64 | 64 | P.1 | 0.001008 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 63 | 63 | All | 0.000012 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 48 | 48 | AY.24 | 0.02069 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 48 | 48 | AY.5.3 | 0.016194 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 46 | 46 | AY.36 | 0.006818 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 45 | 45 | B.1.258.17 | 0.004679 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 42 | 42 | B.1.526 | 0.000987 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 42 | 42 | B.1.575 | 0.012743 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 40 | 40 | AY.39 | 0.000988 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 38 | 38 | All | 0.000007 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 26 | 34 | B.1.177 | 0.000342 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 8 | 34 | B.1.177 | 0.000105 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 32 | 32 | AY.5 | 0.000661 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 31 | 31 | All | 0.000006 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 31 | 31 | B.1 | 0.000284 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 29 | 30 | B.1.1.7 | 0.000026 |
ORF1ab/nsp2 | 122 | S122P | TcT | CcC | 1 | 30 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 28 | 28 | AY.44 | 0.00017 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 27 | 27 | AY.102 | 0.000716 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 27 | 27 | AY.9.1 | 0.002261 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 25 | 25 | B.1.8 | 0.04931 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 22 | 24 | AY.4 | 0.000034 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 2 | 24 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 23 | 23 | AY.99.2 | 0.00212 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 18 | 23 | B.1.1.7 | 0.000016 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcA | 3 | 23 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 2 | 23 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 22 | 22 | AY.3 | 0.000219 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 22 | 22 | AY.39 | 0.000544 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 19 | 22 | AY.44 | 0.000116 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 2 | 22 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 122 | S122S | TCT | AGC | 1 | 22 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 22 | 22 | B.1.1.50 | 0.014936 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 22 | 22 | B.1.258 | 0.001464 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 20 | 20 | B.1.160 | 0.000624 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 19 | 19 | AY.29 | 0.0003 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 18 | 18 | B.1.320 | 0.022416 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 17 | 17 | AY.20 | 0.000661 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 17 | 17 | AY.23 | 0.001186 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 17 | 17 | B.1.1.222 | 0.003468 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 17 | 17 | B.1.596 | 0.001481 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 16 | 16 | AY.9.2 | 0.000588 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 15 | 15 | AY.98.1 | 0.000726 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 14 | 14 | AY.39.1.1 | 0.010145 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 14 | 14 | B.1.466.2 | 0.005477 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 14 | 14 | B.1.595 | 0.003653 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 13 | 13 | B.1.177.8 | 0.009782 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 12 | 12 | AY.35 | 0.002797 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 12 | 12 | AY.47 | 0.000373 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 12 | 12 | B.1.438.1 | 0.001287 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 12 | 12 | B.1.623 | 0.006438 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp2 | 122 | S122T | Tct | Act | 11 | 11 | All | 0.000002 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 11 | 11 | B.1.1.486 | 0.01735 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 11 | 11 | B.1.637 | 0.000804 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 10 | 10 | AY.5.4 | 0.002767 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 10 | 10 | B.1.36.22 | 0.012077 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 9 | 9 | B.1.351.5 | 0.005396 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 9 | 9 | B.1.456 | 0.029412 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 8 | 9 | B.1.617.2 | 0.00003 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 1 | 9 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 8 | 8 | AY.62 | 0.003486 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 8 | 8 | B.1.1.417 | 0.021622 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 8 | 8 | B.1.206 | 0.006525 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 8 | 8 | B.1.425 | 0.023952 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 7 | 7 | B.1.177.60 | 0.001529 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 7 | 7 | B.1.36.16 | 0.009972 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 7 | 7 | B.1.36.8 | 0.007 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 6 | 6 | AY.56 | 0.009631 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 6 | 6 | B.1.1.297 | 0.013423 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 6 | 6 | B.1.270 | 0.033708 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | AY.52 | 0.004072 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 5 | 5 | AY.9.1 | 0.000419 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 5 | AY.98 | 0.000316 |
ORF1ab/nsp2 | 122 | S122F | tCT | tTC | 1 | 5 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | B | 0.000639 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | B.1.110.3 | 0.003592 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | B.1.177.54 | 0.003032 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | B.1.356 | 0.008636 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp2 | 122 | S122C | tCt | tGt | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 122 | S122del1 | tCt | t-t | 3 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 122 | S122del1 | tcT | tc- | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | AU.1 | 0.005063 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | B.1.1.337 | 0.014388 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | B.1.177.25 | 0.059701 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | B.1.177.57 | 0.001124 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 4 | 4 | B.1.367 | 0.00317 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | B.1.524 | 0.005626 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 4 | 4 | B.1.612 | 0.01061 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | P.1.6 | 0.007782 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | A | 0.001161 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp2 | 122 | S122T | Tct | Act | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 3 | 3 | AY.7.2 | 0.001678 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.329 | 0.001823 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 3 | 3 | B.1.36.7 | 0.012 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.395 | 0.021127 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 3 | 3 | C.17 | 0.166667 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp2 | 122 | S122C | tCt | tGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 122 | S122H | TCt | CAt | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 122 | S122V | TCT | GTG | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 122 | S122G | TCT | GGC | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 122 | S122V | TCT | GTC | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 122 | S122G | TCT | GGG | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 122 | S122T | Tct | Act | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 1 | 2 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 2 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 122 | S122T | Tct | Act | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 122 | S122G | TCT | GGC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122V | TCT | GTC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122V | TCT | GTG | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122G | TCT | GGG | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | AY.86 | 0.00166 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.1.301 | 0.002358 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 122 | S122T | Tct | Act | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.106 | 0.0625 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.398 | 0.005952 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | B.61 | 0.011494 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 122 | S122I | TCT | ATC | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 122 | S122R | TCT | AGG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 122 | S122M | TCT | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 122 | S122W | tCT | tGG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 122 | S122D | TCt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 122 | S122T | Tct | Act | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 122 | S122C | tCt | tGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 122 | S122R | TCT | AGG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122I | TCT | ATC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122M | TCT | ATG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 122 | S122H | TCt | CAt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 122 | S122H | TCt | CAt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 122 | S122C | tCt | tGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 122 | S122del1 | tCt | t-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp2 | 122 | S122P | TcT | CcC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.517 | 0.006803 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.177.61 | 0.043478 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp2 | 122 | S122del1 | tcT | tc- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 122 | S122T | Tct | Act | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 122 | S122del1 | tCt | t-t | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.214.3 | 0.007143 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.224 | 0.025 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp2 | 122 | S122del1 | tCt | t-t | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.379 | 0.017241 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.44 | 0.008333 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.442 | 0.035714 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp2 | 122 | S122A | Tct | Gct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 122 | S122D | TCt | GAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 122 | S122W | tCT | tGG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | B.4.6 | 0.016667 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcC | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | B.50 | 0.111111 |
ORF1ab/nsp2 | 122 | S122P | Tct | Cct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 122 | S122del | TCT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 122 | S122S | tcT | tcG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 122 | S122Y | tCt | tAt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | U.1 | 0.012821 |
ORF1ab/nsp2 | 122 | S122F | tCt | tTt | 1 | 1 | W.1 | 0.008696 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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