CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 120 | I120F | I300F | nonsyn | Att | Ttt | 20660 | 20659 | 0.999952 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120F | I300F | nonsyn | AtT | TtC | 20660 | 1 | 0.0000484027 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120V | I300V | nonsyn | Att | Gtt | 454 | 450 | 0.991189 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120V | I300V | nonsyn | AtT | GtG | 454 | 2 | 0.00440529 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120V | I300V | nonsyn | AtT | GtC | 454 | 2 | 0.00440529 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120I | I300I | syn | atT | atC | 313 | 235 | 0.750799 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120I | I300I | syn | atT | atA | 313 | 78 | 0.249201 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120L | I300L | nonsyn | Att | Ctt | 208 | 207 | 0.995192 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120L | I300L | nonsyn | AtT | TtA | 208 | 1 | 0.00480769 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120M | I300M | nonsyn | atT | atG | 45 | 45 | 1 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120T | I300T | nonsyn | aTt | aCt | 37 | 37 | 1 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120del | I300del | del | ATT | --- | 29 | 29 | 1 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120S | I300S | nonsyn | aTt | aGt | 5 | 3 | 0.6 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120S | I300S | nonsyn | ATT | TCA | 5 | 1 | 0.2 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120S | I300S | nonsyn | ATT | TCC | 5 | 1 | 0.2 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120R | I300R | nonsyn | aTT | aGA | 3 | 2 | 0.666667 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120R | I300R | nonsyn | aTT | aGG | 3 | 1 | 0.333333 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120del1 | I300del1 | del | aTt | a-t | 2 | 1 | 0.5 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120del1 | I300del1 | del | AtT | -tN | 2 | 1 | 0.5 | 1163-1165 |
ORF1ab/nsp2 | 120 | I120K | I300K | nonsyn | aTT | aAA | 1 | 1 | 1 | 1163-1165 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 20659 | 20660 | All | 0.003951 |
ORF1ab/nsp2 | 120 | I120F | AtT | TtC | 1 | 20660 | All | 0 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 13320 | 13320 | D.2 | 0.99955 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 4558 | 4558 | AD.2 | 0.998029 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1749 | 1749 | B.1.1.25 | 0.994315 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 450 | 454 | All | 0.000086 |
ORF1ab/nsp2 | 120 | I120V | AtT | GtC | 2 | 454 | All | 0 |
ORF1ab/nsp2 | 120 | I120V | AtT | GtG | 2 | 454 | All | 0 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 235 | 313 | All | 0.000045 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 78 | 313 | All | 0.000015 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 237 | 237 | AD.1 | 0.975309 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 207 | 208 | All | 0.00004 |
ORF1ab/nsp2 | 120 | I120L | AtT | TtA | 1 | 208 | All | 0 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 201 | 201 | D.5 | 1 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 184 | 184 | AY.44 | 0.00112 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 169 | 169 | D.3 | 1 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 126 | 126 | B.1.628 | 0.044397 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 112 | 112 | B.1 | 0.001026 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 110 | 110 | B.1.1.315 | 0.932203 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 76 | 76 | AY.25 | 0.000457 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 57 | 65 | B.1.1.7 | 0.000051 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 8 | 65 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 57 | 57 | AY.4 | 0.000089 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 55 | 55 | B.1.1 | 0.000998 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 48 | 48 | AY.3 | 0.000477 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 45 | 45 | All | 0.000009 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 37 | 37 | All | 0.000007 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 34 | 34 | B.1 | 0.000311 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 29 | 29 | All | 0.000006 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 27 | 29 | AY.3 | 0.000269 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 2 | 29 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 23 | 23 | AY.44 | 0.00014 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 23 | 23 | B.1.369 | 0.00656 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 22 | 22 | AD.2.1 | 1 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 22 | 22 | B.1.2 | 0.000194 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 20 | 20 | B.1.596 | 0.001743 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 15 | 15 | AY.22 | 0.031381 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 14 | 15 | AY.44 | 0.000085 |
ORF1ab/nsp2 | 120 | I120L | AtT | TtA | 1 | 15 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 15 | 15 | D.4 | 1 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 13 | 13 | B.1.177.57 | 0.003653 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 12 | 13 | B.1.617.2 | 0.000045 |
ORF1ab/nsp2 | 120 | I120V | AtT | GtC | 1 | 13 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 11 | 11 | B.1.177.81 | 0.002083 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 9 | 9 | AY.30 | 0.003562 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 7 | 8 | B.1.617.2 | 0.000026 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 1 | 8 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 5 | 6 | B.1.1 | 0.000091 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp2 | 120 | I120S | aTt | aGt | 3 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 120 | I120S | ATT | TCC | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 120 | I120S | ATT | TCA | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 120 | I120R | aTT | aGA | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 120 | I120R | aTT | aGG | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 3 | 3 | B | 0.000383 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 120 | I120V | AtT | GtG | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 120 | I120del1 | AtT | -tN | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 120 | I120del1 | aTt | a-t | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 120 | I120S | ATT | TCA | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 120 | I120S | ATT | TCC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 1 | 2 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 2 | 2 | B.1.9.4 | 0.01227 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 2 | 2 | P.1.17.1 | 0.00175 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 120 | I120K | aTT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 120 | I120I | atT | atA | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 120 | I120V | AtT | GtC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 120 | I120F | AtT | TtC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 120 | I120R | aTT | aGA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 120 | I120R | aTT | aGA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 120 | I120del1 | aTt | a-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 120 | I120S | aTt | aGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 120 | I120R | aTT | aGG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 120 | I120del1 | AtT | -tN | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp2 | 120 | I120S | aTt | aGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 120 | I120K | aTT | aAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.181 | 0.019608 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 120 | I120S | aTt | aGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 120 | I120del | ATT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 120 | I120F | Att | Ttt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 120 | I120M | atT | atG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 120 | I120L | Att | Ctt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 120 | I120V | Att | Gtt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 120 | I120T | aTt | aCt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 120 | I120I | atT | atC | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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