CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 120

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2120I120FI300FnonsynAttTtt20660206590.9999521163-1165
ORF1ab/nsp2120I120FI300FnonsynAtTTtC2066010.00004840271163-1165
ORF1ab/nsp2120I120VI300VnonsynAttGtt4544500.9911891163-1165
ORF1ab/nsp2120I120VI300VnonsynAtTGtG45420.004405291163-1165
ORF1ab/nsp2120I120VI300VnonsynAtTGtC45420.004405291163-1165
ORF1ab/nsp2120I120II300IsynatTatC3132350.7507991163-1165
ORF1ab/nsp2120I120II300IsynatTatA313780.2492011163-1165
ORF1ab/nsp2120I120LI300LnonsynAttCtt2082070.9951921163-1165
ORF1ab/nsp2120I120LI300LnonsynAtTTtA20810.004807691163-1165
ORF1ab/nsp2120I120MI300MnonsynatTatG454511163-1165
ORF1ab/nsp2120I120TI300TnonsynaTtaCt373711163-1165
ORF1ab/nsp2120I120delI300deldelATT---292911163-1165
ORF1ab/nsp2120I120SI300SnonsynaTtaGt530.61163-1165
ORF1ab/nsp2120I120SI300SnonsynATTTCA510.21163-1165
ORF1ab/nsp2120I120SI300SnonsynATTTCC510.21163-1165
ORF1ab/nsp2120I120RI300RnonsynaTTaGA320.6666671163-1165
ORF1ab/nsp2120I120RI300RnonsynaTTaGG310.3333331163-1165
ORF1ab/nsp2120I120del1I300del1delaTta-t210.51163-1165
ORF1ab/nsp2120I120del1I300del1delAtT-tN210.51163-1165
ORF1ab/nsp2120I120KI300KnonsynaTTaAA1111163-1165

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2120I120FAttTtt2065920660All0.003951
ORF1ab/nsp2120I120FAtTTtC120660All0
ORF1ab/nsp2120I120FAttTtt1332013320D.20.99955
ORF1ab/nsp2120I120FAttTtt45584558AD.20.998029
ORF1ab/nsp2120I120FAttTtt17491749B.1.1.250.994315
ORF1ab/nsp2120I120VAttGtt450454All0.000086
ORF1ab/nsp2120I120VAtTGtC2454All0
ORF1ab/nsp2120I120VAtTGtG2454All0
ORF1ab/nsp2120I120IatTatC235313All0.000045
ORF1ab/nsp2120I120IatTatA78313All0.000015
ORF1ab/nsp2120I120FAttTtt237237AD.10.975309
ORF1ab/nsp2120I120LAttCtt207208All0.00004
ORF1ab/nsp2120I120LAtTTtA1208All0
ORF1ab/nsp2120I120FAttTtt201201D.51
ORF1ab/nsp2120I120VAttGtt184184AY.440.00112
ORF1ab/nsp2120I120FAttTtt169169D.31
ORF1ab/nsp2120I120LAttCtt126126B.1.6280.044397
ORF1ab/nsp2120I120FAttTtt112112B.10.001026
ORF1ab/nsp2120I120FAttTtt110110B.1.1.3150.932203
ORF1ab/nsp2120I120VAttGtt7676AY.250.000457
ORF1ab/nsp2120I120IatTatC5765B.1.1.70.000051
ORF1ab/nsp2120I120IatTatA865B.1.1.70.000007
ORF1ab/nsp2120I120IatTatC5757AY.40.000089
ORF1ab/nsp2120I120FAttTtt5555B.1.10.000998
ORF1ab/nsp2120I120FAttTtt4848AY.30.000477
ORF1ab/nsp2120I120MatTatG4545All0.000009
ORF1ab/nsp2120I120TaTtaCt3737All0.000007
ORF1ab/nsp2120I120VAttGtt3434B.10.000311
ORF1ab/nsp2120I120delATT---2929All0.000006
ORF1ab/nsp2120I120IatTatA2729AY.30.000269
ORF1ab/nsp2120I120IatTatC229AY.30.00002
ORF1ab/nsp2120I120VAttGtt2626AY.40.00004
ORF1ab/nsp2120I120VAttGtt2626B.1.1.70.000023
ORF1ab/nsp2120I120IatTatC2323AY.440.00014
ORF1ab/nsp2120I120IatTatC2323B.1.3690.00656
ORF1ab/nsp2120I120FAttTtt2222AD.2.11
ORF1ab/nsp2120I120LAttCtt2222B.1.20.000194
ORF1ab/nsp2120I120IatTatA2020B.1.5960.001743
ORF1ab/nsp2120I120FAttTtt1515AY.220.031381
ORF1ab/nsp2120I120LAttCtt1415AY.440.000085
ORF1ab/nsp2120I120LAtTTtA115AY.440.000006
ORF1ab/nsp2120I120FAttTtt1515D.41
ORF1ab/nsp2120I120LAttCtt1313AY.40.00002
ORF1ab/nsp2120I120IatTatA1313B.1.177.570.003653
ORF1ab/nsp2120I120MatTatG1313B.1.617.20.000049
ORF1ab/nsp2120I120VAttGtt1213B.1.617.20.000045
ORF1ab/nsp2120I120VAtTGtC113B.1.617.20.000004
ORF1ab/nsp2120I120IatTatC1111B.10.000101
ORF1ab/nsp2120I120VAttGtt1111B.1.177.810.002083
ORF1ab/nsp2120I120FAttTtt1010B.1.1.70.000009
ORF1ab/nsp2120I120FAttTtt1010B.1.2210.00071
ORF1ab/nsp2120I120VAttGtt99AY.3.10.000767
ORF1ab/nsp2120I120IatTatC99AY.300.003562
ORF1ab/nsp2120I120TaTtaCt99AY.40.000014
ORF1ab/nsp2120I120MatTatG99AY.440.000055
ORF1ab/nsp2120I120VAttGtt88AY.1190.000282
ORF1ab/nsp2120I120VAttGtt88B.1.10.000145
ORF1ab/nsp2120I120IatTatC78B.1.617.20.000026
ORF1ab/nsp2120I120IatTatA18B.1.617.20.000004
ORF1ab/nsp2120I120MatTatG77B.1.1.70.000006
ORF1ab/nsp2120I120delATT---77B.1.1.70.000006
ORF1ab/nsp2120I120LAttCtt66AY.30.00006
ORF1ab/nsp2120I120IatTatC56B.1.10.000091
ORF1ab/nsp2120I120IatTatA16B.1.10.000018
ORF1ab/nsp2120I120VAttGtt66B.1.1.5190.000238
ORF1ab/nsp2120I120FAttTtt66B.1.1770.000079
ORF1ab/nsp2120I120VAttGtt66B.1.4290.000141
ORF1ab/nsp2120I120SaTtaGt35All0.000001
ORF1ab/nsp2120I120SATTTCC15All0
ORF1ab/nsp2120I120SATTTCA15All0
ORF1ab/nsp2120I120delATT---55B.1.1.330.002104
ORF1ab/nsp2120I120LAttCtt55B.1.1.70.000004
ORF1ab/nsp2120I120VAttGtt44AY.1030.000025
ORF1ab/nsp2120I120IatTatC34AY.430.000013
ORF1ab/nsp2120I120IatTatA14AY.430.000004
ORF1ab/nsp2120I120VAttGtt44AY.690.000747
ORF1ab/nsp2120I120TaTtaCt44B.1.1.70.000004
ORF1ab/nsp2120I120IatTatA44B.1.1600.000125
ORF1ab/nsp2120I120TaTtaCt44B.1.617.20.000015
ORF1ab/nsp2120I120IatTatC44P.10.000063
ORF1ab/nsp2120I120RaTTaGA23All0
ORF1ab/nsp2120I120RaTTaGG13All0
ORF1ab/nsp2120I120LAttCtt33AY.1020.00008
ORF1ab/nsp2120I120VAttGtt33AY.1090.002219
ORF1ab/nsp2120I120MatTatG33AY.40.000005
ORF1ab/nsp2120I120VAttGtt33B0.000383
ORF1ab/nsp2120I120delATT---33B.1.1.3480.002389
ORF1ab/nsp2120I120delATT---220.111111
ORF1ab/nsp2120I120VAtTGtG220.111111
ORF1ab/nsp2120I120del1AtT-tN12All0
ORF1ab/nsp2120I120del1aTta-t12All0
ORF1ab/nsp2120I120LAttCtt22AY.1030.000012
ORF1ab/nsp2120I120LAttCtt22AY.250.000012
ORF1ab/nsp2120I120VAttGtt22AY.30.00002
ORF1ab/nsp2120I120IatTatC22AY.39.10.000079
ORF1ab/nsp2120I120TaTtaCt22AY.430.000009
ORF1ab/nsp2120I120SATTTCA12AY.440.000006
ORF1ab/nsp2120I120SATTTCC12AY.440.000006
ORF1ab/nsp2120I120VAttGtt22AY.5.30.000675
ORF1ab/nsp2120I120LAttCtt22B.1.10.000036
ORF1ab/nsp2120I120IatTatC22B.1.1.280.000622
ORF1ab/nsp2120I120TaTtaCt22B.1.1.500.001358
ORF1ab/nsp2120I120FAttTtt22B.1.1600.000062
ORF1ab/nsp2120I120TaTtaCt22B.1.1600.000062
ORF1ab/nsp2120I120VAttGtt22B.1.1770.000026
ORF1ab/nsp2120I120IatTatC12B.1.1770.000013
ORF1ab/nsp2120I120IatTatA12B.1.1770.000013
ORF1ab/nsp2120I120FAttTtt22B.1.177.160.001329
ORF1ab/nsp2120I120IatTatC22B.1.20.000018
ORF1ab/nsp2120I120MatTatG22B.1.20.000018
ORF1ab/nsp2120I120MatTatG22B.1.3510.000059
ORF1ab/nsp2120I120IatTatC22B.1.36.190.018519
ORF1ab/nsp2120I120delATT---22B.1.4290.000047
ORF1ab/nsp2120I120TaTtaCt22B.1.5960.000174
ORF1ab/nsp2120I120VAttGtt22B.1.6090.000959
ORF1ab/nsp2120I120delATT---22B.1.617.20.000008
ORF1ab/nsp2120I120VAttGtt22B.1.9.40.01227
ORF1ab/nsp2120I120delATT---22N.60.014184
ORF1ab/nsp2120I120IatTatC22P.1.17.10.00175
ORF1ab/nsp2120I120delATT---22P.20.000373
ORF1ab/nsp2120I120VAttGtt11A.2.50.000499
ORF1ab/nsp2120I120KaTTaAA11All0
ORF1ab/nsp2120I120FAttTtt11AP.10.001502
ORF1ab/nsp2120I120VAttGtt11AY.1000.000046
ORF1ab/nsp2120I120IatTatC11AY.1020.000027
ORF1ab/nsp2120I120MatTatG11AY.1020.000027
ORF1ab/nsp2120I120FAttTtt11AY.1030.000006
ORF1ab/nsp2120I120TaTtaCt11AY.1030.000006
ORF1ab/nsp2120I120MatTatG11AY.1030.000006
ORF1ab/nsp2120I120IatTatC11AY.1110.000183
ORF1ab/nsp2120I120IatTatC11AY.1180.000063
ORF1ab/nsp2120I120TaTtaCt11AY.1210.000135
ORF1ab/nsp2120I120IatTatC11AY.170.008197
ORF1ab/nsp2120I120IatTatA11AY.230.00007
ORF1ab/nsp2120I120MatTatG11AY.250.000006
ORF1ab/nsp2120I120IatTatC11AY.250.000006
ORF1ab/nsp2120I120IatTatC11AY.260.000028
ORF1ab/nsp2120I120LAttCtt11AY.260.000028
ORF1ab/nsp2120I120LAttCtt11AY.290.000016
ORF1ab/nsp2120I120VAttGtt11AY.290.000016
ORF1ab/nsp2120I120TaTtaCt11AY.30.00001
ORF1ab/nsp2120I120TaTtaCt11AY.360.000148
ORF1ab/nsp2120I120FAttTtt11AY.370.000316
ORF1ab/nsp2120I120IatTatC11AY.380.000499
ORF1ab/nsp2120I120VAttGtt11AY.390.000025
ORF1ab/nsp2120I120delATT---11AY.390.000025
ORF1ab/nsp2120I120LAttCtt11AY.390.000025
ORF1ab/nsp2120I120FAttTtt11AY.40.000002
ORF1ab/nsp2120I120IatTatC11AY.4.20.000022
ORF1ab/nsp2120I120IatTatC11AY.4.50.000107
ORF1ab/nsp2120I120IatTatA11AY.420.00004
ORF1ab/nsp2120I120VAtTGtC11AY.430.000004
ORF1ab/nsp2120I120FAtTTtC11AY.440.000006
ORF1ab/nsp2120I120TaTtaCt11AY.440.000006
ORF1ab/nsp2120I120VAttGtt11AY.46.60.000072
ORF1ab/nsp2120I120IatTatC11AY.50.000021
ORF1ab/nsp2120I120TaTtaCt11AY.50.000021
ORF1ab/nsp2120I120delATT---11AY.620.000436
ORF1ab/nsp2120I120LAttCtt11AY.690.000187
ORF1ab/nsp2120I120RaTTaGA11AY.840.000437
ORF1ab/nsp2120I120IatTatC11AY.940.000443
ORF1ab/nsp2120I120FAttTtt11AY.980.000079
ORF1ab/nsp2120I120RaTTaGA11AY.990.001049
ORF1ab/nsp2120I120MatTatG11B0.000128
ORF1ab/nsp2120I120LAttCtt11B.10.000009
ORF1ab/nsp2120I120del1aTta-t11B.10.000009
ORF1ab/nsp2120I120SaTtaGt11B.1.10.000018
ORF1ab/nsp2120I120RaTTaGG11B.1.10.000018
ORF1ab/nsp2120I120MatTatG11B.1.10.000018
ORF1ab/nsp2120I120LAttCtt11B.1.1.1170.009709
ORF1ab/nsp2120I120VAttGtt11B.1.1.2160.00089
ORF1ab/nsp2120I120FAttTtt11B.1.1.2530.002506
ORF1ab/nsp2120I120VAttGtt11B.1.1.2940.001266
ORF1ab/nsp2120I120VAttGtt11B.1.1.3060.000438
ORF1ab/nsp2120I120FAttTtt11B.1.1.330.000421
ORF1ab/nsp2120I120del1AtT-tN11B.1.1.3480.000796
ORF1ab/nsp2120I120IatTatC11B.1.1.3690.000446
ORF1ab/nsp2120I120FAttTtt11B.1.1.370.000193
ORF1ab/nsp2120I120TaTtaCt11B.1.1.4090.002833
ORF1ab/nsp2120I120MatTatG11B.1.1.5190.00004
ORF1ab/nsp2120I120VAttGtt11B.1.1.5260.003546
ORF1ab/nsp2120I120SaTtaGt11B.1.1.70.000001
ORF1ab/nsp2120I120KaTTaAA11B.1.1.70.000001
ORF1ab/nsp2120I120FAttTtt11B.1.1400.018868
ORF1ab/nsp2120I120VAttGtt11B.1.1600.000031
ORF1ab/nsp2120I120IatTatC11B.1.160.140.002119
ORF1ab/nsp2120I120FAttTtt11B.1.177.110.001698
ORF1ab/nsp2120I120FAttTtt11B.1.177.570.000281
ORF1ab/nsp2120I120delATT---11B.1.177.70.000165
ORF1ab/nsp2120I120FAttTtt11B.1.177.730.000566
ORF1ab/nsp2120I120VAttGtt11B.1.1810.019608
ORF1ab/nsp2120I120TaTtaCt11B.1.20.000009
ORF1ab/nsp2120I120VAttGtt11B.1.2210.000071
ORF1ab/nsp2120I120MatTatG11B.1.2210.000071
ORF1ab/nsp2120I120SaTtaGt11B.1.2210.000071
ORF1ab/nsp2120I120LAttCtt11B.1.2210.000071
ORF1ab/nsp2120I120IatTatC11B.1.2340.000132
ORF1ab/nsp2120I120IatTatC11B.1.2400.000216
ORF1ab/nsp2120I120MatTatG11B.1.2430.00007
ORF1ab/nsp2120I120VAttGtt11B.1.2430.00007
ORF1ab/nsp2120I120IatTatC11B.1.2430.00007
ORF1ab/nsp2120I120VAttGtt11B.1.3240.001605
ORF1ab/nsp2120I120LAttCtt11B.1.3510.00003
ORF1ab/nsp2120I120VAttGtt11B.1.3510.00003
ORF1ab/nsp2120I120FAttTtt11B.1.351.30.000876
ORF1ab/nsp2120I120VAttGtt11B.1.360.000146
ORF1ab/nsp2120I120FAttTtt11B.1.36.100.004785
ORF1ab/nsp2120I120VAttGtt11B.1.36.290.000517
ORF1ab/nsp2120I120FAttTtt11B.1.36.80.001
ORF1ab/nsp2120I120FAttTtt11B.1.3890.001002
ORF1ab/nsp2120I120IatTatC11B.1.4290.000024
ORF1ab/nsp2120I120IatTatC11B.1.466.20.000391
ORF1ab/nsp2120I120LAttCtt11B.1.5210.004975
ORF1ab/nsp2120I120VAttGtt11B.1.5600.00463
ORF1ab/nsp2120I120TaTtaCt11B.1.5640.000426
ORF1ab/nsp2120I120LAttCtt11B.1.5760.000907
ORF1ab/nsp2120I120TaTtaCt11B.1.617.10.000129
ORF1ab/nsp2120I120FAttTtt11B.1.617.20.000004
ORF1ab/nsp2120I120LAttCtt11B.1.617.20.000004
ORF1ab/nsp2120I120IatTatC11B.1.6210.000089
ORF1ab/nsp2120I120IatTatC11B.1.6230.000536
ORF1ab/nsp2120I120IatTatC11B.1.6280.000352
ORF1ab/nsp2120I120VAttGtt11C.360.000911
ORF1ab/nsp2120I120delATT---11N.40.004255
ORF1ab/nsp2120I120IatTatC11N.50.001767
ORF1ab/nsp2120I120FAttTtt11P.10.000016
ORF1ab/nsp2120I120MatTatG11P.10.000016
ORF1ab/nsp2120I120TaTtaCt11P.10.000016
ORF1ab/nsp2120I120LAttCtt11P.1.120.000484
ORF1ab/nsp2120I120VAttGtt11P.1.140.000048
ORF1ab/nsp2120I120TaTtaCt11P.20.000187
ORF1ab/nsp2120I120IatTatC11Q.80.000165