CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 12 | G12G | G192G | syn | ggC | ggT | 3048 | 2624 | 0.860892 | 839-841 |
ORF1ab/nsp2 | 12 | G12G | G192G | syn | ggC | ggA | 3048 | 416 | 0.136483 | 839-841 |
ORF1ab/nsp2 | 12 | G12G | G192G | syn | ggC | ggG | 3048 | 8 | 0.00262467 | 839-841 |
ORF1ab/nsp2 | 12 | G12D | G192D | nonsyn | gGc | gAc | 608 | 605 | 0.995066 | 839-841 |
ORF1ab/nsp2 | 12 | G12D | G192D | nonsyn | gGC | gAT | 608 | 3 | 0.00493421 | 839-841 |
ORF1ab/nsp2 | 12 | G12S | G192S | nonsyn | Ggc | Agc | 490 | 489 | 0.997959 | 839-841 |
ORF1ab/nsp2 | 12 | G12S | G192S | nonsyn | GgC | AgT | 490 | 1 | 0.00204082 | 839-841 |
ORF1ab/nsp2 | 12 | G12C | G192C | nonsyn | Ggc | Tgc | 125 | 125 | 1 | 839-841 |
ORF1ab/nsp2 | 12 | G12del | G192del | del | GGC | --- | 33 | 33 | 1 | 839-841 |
ORF1ab/nsp2 | 12 | G12A | G192A | nonsyn | gGc | gCc | 15 | 15 | 1 | 839-841 |
ORF1ab/nsp2 | 12 | G12V | G192V | nonsyn | gGc | gTc | 12 | 11 | 0.916667 | 839-841 |
ORF1ab/nsp2 | 12 | G12V | G192V | nonsyn | gGC | gTT | 12 | 1 | 0.0833333 | 839-841 |
ORF1ab/nsp2 | 12 | G12R | G192R | nonsyn | Ggc | Cgc | 3 | 3 | 1 | 839-841 |
ORF1ab/nsp2 | 12 | G12N | G192N | nonsyn | GGc | AAc | 3 | 2 | 0.666667 | 839-841 |
ORF1ab/nsp2 | 12 | G12del1 | G192del1 | del | ggC | gg- | 3 | 1 | 0.333333 | 839-841 |
ORF1ab/nsp2 | 12 | G12del1 | G192del1 | del | Ggc | -gc | 3 | 1 | 0.333333 | 839-841 |
ORF1ab/nsp2 | 12 | G12N | G192N | nonsyn | GGC | AAT | 3 | 1 | 0.333333 | 839-841 |
ORF1ab/nsp2 | 12 | G12del1 | G192del1 | del | GGc | -Cc | 3 | 1 | 0.333333 | 839-841 |
ORF1ab/nsp2 | 12 | G12P | G192P | nonsyn | GGc | CCc | 1 | 1 | 1 | 839-841 |
ORF1ab/nsp2 | 12 | G12H | G192H | nonsyn | GGc | CAc | 1 | 1 | 1 | 839-841 |
ORF1ab/nsp2 | 12 | G12W | G192W | nonsyn | GgC | TgG | 1 | 1 | 1 | 839-841 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2624 | 3048 | All | 0.000502 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 416 | 3048 | All | 0.00008 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggG | 8 | 3048 | All | 0.000002 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1313 | 1451 | B.1.1.7 | 0.001175 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 138 | 1451 | B.1.1.7 | 0.000124 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 605 | 608 | All | 0.000116 |
ORF1ab/nsp2 | 12 | G12D | gGC | gAT | 3 | 608 | All | 0.000001 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 489 | 490 | All | 0.000094 |
ORF1ab/nsp2 | 12 | G12S | GgC | AgT | 1 | 490 | All | 0 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 285 | 285 | B.1.634 | 0.976027 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 99 | 170 | AY.4 | 0.000154 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 71 | 170 | AY.4 | 0.000111 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 155 | 165 | B.1.617.2 | 0.000584 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 10 | 165 | B.1.617.2 | 0.000038 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 148 | 148 | B.1.232 | 0.079527 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 125 | 125 | All | 0.000024 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 125 | 125 | B.1.1.7 | 0.000112 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 107 | 107 | B.1.1.7 | 0.000096 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 37 | 67 | B.1.2 | 0.000326 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 30 | 67 | B.1.2 | 0.000264 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 66 | 66 | B.1.258 | 0.004392 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 64 | 64 | AY.36 | 0.009486 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 63 | 63 | AY.103 | 0.000391 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 43 | 45 | AY.102 | 0.00114 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 45 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 27 | 45 | B.1 | 0.000247 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 11 | 45 | B.1 | 0.000101 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggG | 7 | 45 | B.1 | 0.000064 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 41 | 41 | B.1.617.2 | 0.000154 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 36 | 36 | AY.44 | 0.000219 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 34 | 34 | AY.4 | 0.000053 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 33 | 33 | All | 0.000006 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 33 | 33 | AY.39 | 0.000815 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 29 | 29 | B.1.177.21 | 0.002218 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 28 | 28 | AY.4 | 0.000044 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 28 | 28 | AY.91 | 0.020453 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 26 | 26 | B.1.567 | 0.086667 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 24 | 25 | AY.46 | 0.002498 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 25 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 25 | 25 | B.1.1.429 | 0.115207 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 21 | 24 | AY.25 | 0.000126 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 3 | 24 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 24 | 24 | D.2 | 0.001801 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 22 | 22 | B.1.231 | 0.709677 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 17 | 21 | AY.44 | 0.000103 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 4 | 21 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 21 | 21 | B.1.131 | 0.184211 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 16 | 18 | AY.3 | 0.000159 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 18 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 10 | 18 | B.1.1 | 0.000181 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 7 | 18 | B.1.1 | 0.000127 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggG | 1 | 18 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 16 | 16 | AY.29 | 0.000252 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 15 | 15 | All | 0.000003 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 10 | 15 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 5 | 15 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 10 | 15 | B.1.177 | 0.000132 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 5 | 15 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 14 | 14 | AY.75 | 0.000784 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 12 | 13 | AY.103 | 0.000075 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 13 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 11 | 12 | All | 0.000002 |
ORF1ab/nsp2 | 12 | G12V | gGC | gTT | 1 | 12 | All | 0 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 11 | 11 | B.1.1.37 | 0.002122 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 6 | 10 | B.1.351 | 0.000178 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 10 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 9 | 9 | B.1.1.399 | 0.818182 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 9 | 9 | B.1.234 | 0.001187 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 8 | 8 | AY.100 | 0.000368 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 4 | 8 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 8 | AY.120 | 0.000149 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 8 | 8 | AY.35 | 0.001864 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 8 | 8 | AY.4.1 | 0.0059 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 8 | 8 | B.1.1.63 | 0.003086 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 7 | AY.20 | 0.000155 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 3 | 7 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 5 | 6 | AY.5 | 0.000103 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 6 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 6 | 6 | AY.60 | 0.005629 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 6 | B.1.351.5 | 0.002398 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 6 | B.1.351.5 | 0.001199 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 6 | 6 | P.1.13 | 0.005391 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 5 | B.1.1.374 | 0.009501 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 5 | B.1.1.374 | 0.002375 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 5 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 5 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 5 | P.1 | 0.000063 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 5 | P.1 | 0.000016 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 4 | 4 | AE.6 | 0.153846 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 4 | 4 | AY.48 | 0.00186 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 4 | 4 | B.1.1.269 | 0.005413 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 3 | 4 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 4 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 12 | G12R | Ggc | Cgc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 12 | G12N | GGc | AAc | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 12 | G12del1 | GGc | -Cc | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 12 | G12del1 | ggC | gg- | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 12 | G12N | GGC | AAT | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 12 | G12del1 | Ggc | -gc | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 3 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 3 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.66 | 0.003209 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 3 | AY.69 | 0.000373 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 3 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | AY.91 | 0.002191 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 3 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 3 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 3 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 3 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 3 | 3 | B.1.177.80 | 0.005736 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 3 | B.1.618 | 0.008065 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 3 | B.1.618 | 0.004032 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 12 | G12S | GgC | AgT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 12 | G12N | GGC | AAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 12 | G12N | GGc | AAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 12 | G12D | gGC | gAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 2 | A.27 | 0.001656 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 2 | A.27 | 0.001656 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 2 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 12 | G12del1 | Ggc | -gc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 12 | G12del1 | ggC | gg- | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 2 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 2 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | B.1.1.273 | 0.013514 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.1.367 | 0.111111 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp2 | 12 | G12V | gGC | gTT | 1 | 2 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 2 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 2 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 2 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.146 | 0.008475 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | B.1.160.23 | 0.009662 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | B.1.167 | 0.015625 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.177.48 | 0.00625 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | B.1.177.53 | 0.004785 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 2 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.280 | 0.014286 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 2 | 2 | B.1.351.3 | 0.001753 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 2 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | B.1.438 | 0.013072 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 12 | G12D | gGC | gAT | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 2 | C.36 | 0.000911 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 2 | C.36 | 0.000911 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 2 | 2 | C.38 | 0.016129 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AE.1 | 0.011364 |
ORF1ab/nsp2 | 12 | G12W | GgC | TgG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 12 | G12H | GGc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 12 | G12P | GGc | CCc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 12 | G12R | Ggc | Cgc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 12 | G12R | Ggc | Cgc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 12 | G12N | GGc | AAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.1.4 | 0.002976 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.1.92 | 0.033333 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 12 | G12del1 | GGc | -Cc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.245 | 0.03125 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp2 | 12 | G12R | Ggc | Cgc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp2 | 12 | G12P | GGc | CCc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.40 | 0.019608 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.517.1 | 0.005263 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 12 | G12A | gGc | gCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 12 | G12H | GGc | CAc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 12 | G12W | GgC | TgG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | B.1.638 | 0.052632 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 12 | G12del | GGC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | C.8 | 0.004464 |
ORF1ab/nsp2 | 12 | G12V | gGc | gTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggA | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 12 | G12C | Ggc | Tgc | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 12 | G12G | ggC | ggT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 12 | G12S | Ggc | Agc | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp2 | 12 | G12D | gGc | gAc | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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