CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 117 | M117V | M297V | nonsyn | Atg | Gtg | 10097 | 10095 | 0.999802 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117V | M297V | nonsyn | AtG | GtT | 10097 | 1 | 0.0000990393 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117V | M297V | nonsyn | AtG | GtC | 10097 | 1 | 0.0000990393 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117I | M297I | nonsyn | atG | atA | 1051 | 758 | 0.721218 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117I | M297I | nonsyn | atG | atT | 1051 | 293 | 0.278782 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117T | M297T | nonsyn | aTg | aCg | 307 | 306 | 0.996743 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117T | M297T | nonsyn | aTG | aCA | 307 | 1 | 0.00325733 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117K | M297K | nonsyn | aTg | aAg | 119 | 119 | 1 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117R | M297R | nonsyn | aTg | aGg | 79 | 79 | 1 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117del | M297del | del | ATG | --- | 36 | 36 | 1 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117L | M297L | nonsyn | Atg | Ttg | 36 | 31 | 0.861111 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117L | M297L | nonsyn | Atg | Ctg | 36 | 5 | 0.138889 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117S | M297S | nonsyn | ATG | TCA | 2 | 2 | 1 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117del2 | M297del2 | del | aTG | a-- | 2 | 1 | 0.5 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117del2 | M297del2 | del | ATg | --g | 2 | 1 | 0.5 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117del1 | M297del1 | del | AtG | Wt- | 2 | 1 | 0.5 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117del1 | M297del1 | del | atG | at- | 2 | 1 | 0.5 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117N | M297N | nonsyn | aTG | aAT | 1 | 1 | 1 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117E | M297E | nonsyn | ATg | GAg | 1 | 1 | 1 | 1154-1156 |
ORF1ab/nsp2 | 117 | M117X | M297X | nonsyn | ATg | TAg | 1 | 1 | 1 | 1154-1156 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10095 | 10097 | All | 0.001931 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtT | 1 | 10097 | All | 0 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtC | 1 | 10097 | All | 0 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 9309 | 9309 | B.1.438.1 | 0.998498 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 758 | 1051 | All | 0.000145 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 293 | 1051 | All | 0.000056 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 559 | 559 | AY.27 | 0.036179 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 306 | 307 | All | 0.000059 |
ORF1ab/nsp2 | 117 | M117T | aTG | aCA | 1 | 307 | All | 0 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 150 | 150 | B.1.438 | 0.980392 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 134 | 134 | N.5 | 0.236749 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 119 | 119 | All | 0.000023 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 94 | 94 | AY.4 | 0.000146 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 79 | 79 | All | 0.000015 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 44 | 77 | B.1.1.7 | 0.000039 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 33 | 77 | B.1.1.7 | 0.00003 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 77 | 77 | D.5 | 0.383085 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 66 | 66 | AY.16 | 0.025057 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 64 | 64 | B.1 | 0.000586 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 62 | 62 | B.1.1.7 | 0.000056 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 52 | 52 | B.1.438.2 | 1 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 42 | 51 | AY.103 | 0.000261 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 9 | 51 | AY.103 | 0.000056 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 51 | 51 | B.1.221 | 0.003623 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 47 | 47 | B.1.177 | 0.000619 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 47 | 47 | B.1.438.4 | 1 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 45 | 45 | B.1.1.7 | 0.00004 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 38 | 38 | B.1.160 | 0.001185 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 36 | 36 | All | 0.000007 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ttg | 31 | 36 | All | 0.000006 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ctg | 5 | 36 | All | 0.000001 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 30 | 30 | B.1.177 | 0.000395 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 29 | 29 | AY.41 | 0.008524 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ttg | 24 | 25 | B.1.1.7 | 0.000021 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ctg | 1 | 25 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 24 | 24 | B.1.617.2 | 0.00009 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 11 | 22 | AY.4 | 0.000017 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 11 | 22 | AY.4 | 0.000017 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 20 | 20 | AY.43 | 0.000089 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 10 | 16 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 6 | 16 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 14 | 14 | B.1.466.2 | 0.005477 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 13 | 13 | B.1.438.3 | 1 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 12 | 12 | AY.5 | 0.000248 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 12 | 12 | B.1.279 | 0.006163 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10 | 11 | AY.43 | 0.000044 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtC | 1 | 11 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 9 | 10 | AY.25 | 0.000054 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 10 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 10 | 10 | N.6 | 0.070922 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 8 | 8 | B.1.1.234 | 0.096386 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 8 | 8 | B.1.177.86 | 0.001468 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 8 | 8 | P.2 | 0.001493 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 7 | 7 | B.1.258 | 0.000466 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 5 | 5 | B.1.1.291 | 0.003712 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 3 | 4 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 4 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 2 | 3 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 3 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ttg | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.468 | 0.017143 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 117 | M117S | ATG | TCA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 117 | M117del1 | atG | at- | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 117 | M117del1 | AtG | Wt- | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 117 | M117del2 | ATg | --g | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 117 | M117del2 | aTG | a-- | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ttg | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 2 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | AtG | GtT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | B.1.575.1 | 0.004878 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 117 | M117T | aTG | aCA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp2 | 117 | M117N | aTG | aAT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 117 | M117E | ATg | GAg | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 117 | M117X | ATg | TAg | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ctg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ctg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 117 | M117del1 | AtG | Wt- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ctg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 117 | M117del2 | ATg | --g | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ttg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ctg | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 117 | M117X | ATg | TAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 117 | M117L | Atg | Ttg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 117 | M117E | ATg | GAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 117 | M117del1 | atG | at- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 117 | M117S | ATG | TCA | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 117 | M117S | ATG | TCA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.367 | 0.055556 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 117 | M117del2 | aTG | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.513 | 0.013889 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp2 | 117 | M117N | aTG | aAT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp2 | 117 | M117K | aTg | aAg | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp2 | 117 | M117del | ATG | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 117 | M117V | Atg | Gtg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 117 | M117T | aTg | aCg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 117 | M117I | atG | atT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 117 | M117R | aTg | aGg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 117 | M117I | atG | atA | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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