CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 115 & Codon = ggT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2115G115GG295GsynggCggT535453190.9934631148-1150

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2115G115GggCggT53195354All0.001017
ORF1ab/nsp2115G115GggCggT10011007B.1.1.70.000896
ORF1ab/nsp2115G115GggCggT754754P.10.011879
ORF1ab/nsp2115G115GggCggT435440AY.40.000677
ORF1ab/nsp2115G115GggCggT272274B.1.617.20.001024
ORF1ab/nsp2115G115GggCggT261262AY.430.001156
ORF1ab/nsp2115G115GggCggT195195B.1.1.2550.590909
ORF1ab/nsp2115G115GggCggT184184B.1.1.2040.559271
ORF1ab/nsp2115G115GggCggT161161AY.440.00098
ORF1ab/nsp2115G115GggCggT127127B.1.415.10.962121
ORF1ab/nsp2115G115GggCggT112114B.1.20.000986
ORF1ab/nsp2115G115GggCggT8787AY.1030.00054
ORF1ab/nsp2115G115GggCggT7474B.1.36.180.031092
ORF1ab/nsp2115G115GggCggT6767AY.30.000666
ORF1ab/nsp2115G115GggCggT6265B.1.10.001125
ORF1ab/nsp2115G115GggCggT5860B.10.000531
ORF1ab/nsp2115G115GggCggT5656AY.260.001585
ORF1ab/nsp2115G115GggCggT5454B.1.5950.014092
ORF1ab/nsp2115G115GggCggT5151B.1.1770.000672
ORF1ab/nsp2115G115GggCggT4446AY.250.000265
ORF1ab/nsp2115G115GggCggT4141B.1.3890.041082
ORF1ab/nsp2115G115GggCggT4040B.1.1.3180.01207
ORF1ab/nsp2115G115GggCggT3838AY.980.003002
ORF1ab/nsp2115G115GggCggT3838B.1.177.820.018138
ORF1ab/nsp2115G115GggCggT3737B.1.1.700.012619
ORF1ab/nsp2115G115GggCggT3636AY.460.003747
ORF1ab/nsp2115G115GggCggT3535AY.290.000552
ORF1ab/nsp2115G115GggCggT3434AY.4.20.000737
ORF1ab/nsp2115G115GggCggT3131B.1.4270.001565
ORF1ab/nsp2115G115GggCggT2526AY.390.000618
ORF1ab/nsp2115G115GggCggT2424B.1.1600.000749
ORF1ab/nsp2115G115GggCggT2424B.1.2430.00167
ORF1ab/nsp2115G115GggCggT2424B.1.3510.000713
ORF1ab/nsp2115G115GggCggT2323B.1.5920.92
ORF1ab/nsp2115G115GggCggT2222AY.1180.001378
ORF1ab/nsp2115G115GggCggT2222AY.3.10.001876
ORF1ab/nsp2115G115GggCggT2121B.1.2580.001397
ORF1ab/nsp2115G115GggCggT2020R.10.0018
ORF1ab/nsp2115G115GggCggT1717AY.1020.000451
ORF1ab/nsp2115G115GggCggT1717AY.39.10.000673
ORF1ab/nsp2115G115GggCggT1717AY.470.000529
ORF1ab/nsp2115G115GggCggT1616B.1.5260.000376
ORF1ab/nsp2115G115GggCggT1616P.1.120.007744
ORF1ab/nsp2115G115GggCggT1616P.1.140.000765
ORF1ab/nsp2115G115GggCggT1515AY.9.10.001256
ORF1ab/nsp2115G115GggCggT1515B.1.2340.001979
ORF1ab/nsp2115G115GggCggT1515P.20.0028
ORF1ab/nsp2115G115GggCggT1313AY.420.000523
ORF1ab/nsp2115G115GggCggT1112AY.200.000428
ORF1ab/nsp2115G115GggCggT1212AY.750.000672
ORF1ab/nsp2115G115GggCggT1212B.1.4290.000282
ORF1ab/nsp2115G115GggCggT1111B.1.438.10.00118
ORF1ab/nsp2115G115GggCggT1010A.23.10.007042
ORF1ab/nsp2115G115GggCggT1010AY.1060.003349
ORF1ab/nsp2115G115GggCggT1010AY.1140.002311
ORF1ab/nsp2115G115GggCggT1010B.1.1.5190.000397
ORF1ab/nsp2115G115GggCggT1010B.1.2980.021142
ORF1ab/nsp2115G115GggCggT1010B.1.617.10.00129
ORF1ab/nsp2115G115GggCggT1010P.1.20.011561
ORF1ab/nsp2115G115GggCggT59AY.60.000206
ORF1ab/nsp2115G115GggCggT99C.370.001045
ORF1ab/nsp2115G115GggCggT88AY.100.00424
ORF1ab/nsp2115G115GggCggT88AZ.10.006938
ORF1ab/nsp2115G115GggCggT88B.1.6370.000585
ORF1ab/nsp2115G115GggCggT77AY.1170.000592
ORF1ab/nsp2115G115GggCggT77AY.230.000488
ORF1ab/nsp2115G115GggCggT77AY.46.60.000505
ORF1ab/nsp2115G115GggCggT77B.1.1.2140.000388
ORF1ab/nsp2115G115GggCggT77P.1.10.002224
ORF1ab/nsp2115G115GggCggT77Q.80.001154
ORF1ab/nsp2115G115GggCggT66A.2.5.30.061856
ORF1ab/nsp2115G115GggCggT66AY.1130.000854
ORF1ab/nsp2115G115GggCggT66AY.1200.000223
ORF1ab/nsp2115G115GggCggT66AY.1210.000812
ORF1ab/nsp2115G115GggCggT66AY.270.000388
ORF1ab/nsp2115G115GggCggT66AY.46.50.00119
ORF1ab/nsp2115G115GggCggT66AY.99.20.000553
ORF1ab/nsp2115G115GggCggT66B.1.1.500.004073
ORF1ab/nsp2115G115GggCggT66B.1.360.000875
ORF1ab/nsp2115G115GggCggT66B.1.4500.068182
ORF1ab/nsp2115G115GggCggT66B.1.5960.000523
ORF1ab/nsp2115G115GggCggT55AY.1000.00023
ORF1ab/nsp2115G115GggCggT55AY.1050.003215
ORF1ab/nsp2115G115GggCggT55AY.450.000608
ORF1ab/nsp2115G115GggCggT55AY.50.000103
ORF1ab/nsp2115G115GggCggT55B.1.1.2310.01548
ORF1ab/nsp2115G115GggCggT55B.1.1.3060.002192
ORF1ab/nsp2115G115GggCggT55B.1.1260.006378
ORF1ab/nsp2115G115GggCggT55B.1.1460.021186
ORF1ab/nsp2115G115GggCggT55B.1.2410.004058
ORF1ab/nsp2115G115GggCggT55B.1.3490.003574
ORF1ab/nsp2115G115GggCggT55B.1.4090.003906
ORF1ab/nsp2115G115GggCggT55B.1.595.40.036496
ORF1ab/nsp2115G115GggCggT55B.1.6210.000443
ORF1ab/nsp2115G115GggCggT44A.2.50.001996
ORF1ab/nsp2115G115GggCggT44AY.1080.00441
ORF1ab/nsp2115G115GggCggT44AY.90.00027
ORF1ab/nsp2115G115GggCggT44B0.000511
ORF1ab/nsp2115G115GggCggT44B.1.1.3170.001647
ORF1ab/nsp2115G115GggCggT44B.1.1.370.000771
ORF1ab/nsp2115G115GggCggT44B.1.1.3980.012903
ORF1ab/nsp2115G115GggCggT44B.1.177.440.002076
ORF1ab/nsp2115G115GggCggT44B.1.466.20.001565
ORF1ab/nsp2115G115GggCggT33AY.1160.00086
ORF1ab/nsp2115G115GggCggT33AY.1190.000106
ORF1ab/nsp2115G115GggCggT33AY.16.10.00141
ORF1ab/nsp2115G115GggCggT33AY.300.001187
ORF1ab/nsp2115G115GggCggT33AY.330.0002
ORF1ab/nsp2115G115GggCggT23AY.4.50.000215
ORF1ab/nsp2115G115GggCggT33AY.790.003632
ORF1ab/nsp2115G115GggCggT33B.1.1.2160.002671
ORF1ab/nsp2115G115GggCggT33B.1.1.2200.005576
ORF1ab/nsp2115G115GggCggT33B.1.1.280.000934
ORF1ab/nsp2115G115GggCggT33B.1.1.3110.001074
ORF1ab/nsp2115G115GggCggT33B.1.177.210.000229
ORF1ab/nsp2115G115GggCggT33B.1.177.860.00055
ORF1ab/nsp2115G115GggCggT33B.1.3110.000824
ORF1ab/nsp2115G115GggCggT33B.1.36.10.003421
ORF1ab/nsp2115G115GggCggT33B.1.3960.002117
ORF1ab/nsp2115G115GggCggT33B.1.4000.001287
ORF1ab/nsp2115G115GggCggT33B.1.4040.003906
ORF1ab/nsp2115G115GggCggT33P.1.150.000697
ORF1ab/nsp2115G115GggCggT33P.1.170.000485
ORF1ab/nsp2115G115GggCggT22A.270.003311
ORF1ab/nsp2115G115GggCggT12AE.80.000489
ORF1ab/nsp2115G115GggCggT22AY.340.000194
ORF1ab/nsp2115G115GggCggT22AY.4.2.10.000298
ORF1ab/nsp2115G115GggCggT22AY.410.000588
ORF1ab/nsp2115G115GggCggT22AY.5.40.000553
ORF1ab/nsp2115G115GggCggT22AY.540.000191
ORF1ab/nsp2115G115GggCggT22AY.590.001059
ORF1ab/nsp2115G115GggCggT22AY.7.20.001119
ORF1ab/nsp2115G115GggCggT22AY.890.009804
ORF1ab/nsp2115G115GggCggT22AY.9.20.000073
ORF1ab/nsp2115G115GggCggT22AY.990.002099
ORF1ab/nsp2115G115GggCggT22B.1.1.2840.000215
ORF1ab/nsp2115G115GggCggT22B.1.1.390.001019
ORF1ab/nsp2115G115GggCggT22B.1.1.4060.012987
ORF1ab/nsp2115G115GggCggT22B.1.177.810.000379
ORF1ab/nsp2115G115GggCggT22B.1.1890.008584
ORF1ab/nsp2115G115GggCggT22B.1.221.10.005814
ORF1ab/nsp2115G115GggCggT22B.1.2400.000431
ORF1ab/nsp2115G115GggCggT22B.1.36.290.001035
ORF1ab/nsp2115G115GggCggT22B.1.3690.00057
ORF1ab/nsp2115G115GggCggT22B.1.4990.002101
ORF1ab/nsp2115G115GggCggT22B.1.5250.000226
ORF1ab/nsp2115G115GggCggT22B.1.5640.000852
ORF1ab/nsp2115G115GggCggT12B.1.5990.00365
ORF1ab/nsp2115G115GggCggT22B.1.6120.005305
ORF1ab/nsp2115G115GggCggT22B.1.621.10.001012
ORF1ab/nsp2115G115GggCggT22B.110.010256
ORF1ab/nsp2115G115GggCggT22B.400.000729
ORF1ab/nsp2115G115GggCggT22C.160.002121
ORF1ab/nsp2115G115GggCggT22C.36.30.001134
ORF1ab/nsp2115G115GggCggT22N.50.003534
ORF1ab/nsp2115G115GggCggT22P.1.160.000748
ORF1ab/nsp2115G115GggCggT11A0.000387
ORF1ab/nsp2115G115GggCggT11A.210.00277
ORF1ab/nsp2115G115GggCggT11AY.1070.000466
ORF1ab/nsp2115G115GggCggT11AY.1100.000113
ORF1ab/nsp2115G115GggCggT11AY.1110.000183
ORF1ab/nsp2115G115GggCggT11AY.140.000088
ORF1ab/nsp2115G115GggCggT11AY.160.00038
ORF1ab/nsp2115G115GggCggT11AY.190.00114
ORF1ab/nsp2115G115GggCggT11AY.240.000431
ORF1ab/nsp2115G115GggCggT11AY.29.10.000221
ORF1ab/nsp2115G115GggCggT11AY.350.000233
ORF1ab/nsp2115G115GggCggT11AY.380.000499
ORF1ab/nsp2115G115GggCggT11AY.39.1.10.000725
ORF1ab/nsp2115G115GggCggT11AY.5.30.000337
ORF1ab/nsp2115G115GggCggT11AY.550.000917
ORF1ab/nsp2115G115GggCggT11AY.570.000656
ORF1ab/nsp2115G115GggCggT11AY.610.000105
ORF1ab/nsp2115G115GggCggT11AY.640.000595
ORF1ab/nsp2115G115GggCggT11AY.680.000274
ORF1ab/nsp2115G115GggCggT11AY.700.000209
ORF1ab/nsp2115G115GggCggT11AY.710.000475
ORF1ab/nsp2115G115GggCggT11AY.720.001361
ORF1ab/nsp2115G115GggCggT11AY.850.000427
ORF1ab/nsp2115G115GggCggT11AY.910.00073
ORF1ab/nsp2115G115GggCggT11AY.920.000287
ORF1ab/nsp2115G115GggCggT11AY.930.000273
ORF1ab/nsp2115G115GggCggT11B.1.1.10.000327
ORF1ab/nsp2115G115GggCggT11B.1.1.1010.01
ORF1ab/nsp2115G115GggCggT11B.1.1.1330.008475
ORF1ab/nsp2115G115GggCggT11B.1.1.1630.007634
ORF1ab/nsp2115G115GggCggT11B.1.1.1890.001513
ORF1ab/nsp2115G115GggCggT11B.1.1.2410.00207
ORF1ab/nsp2115G115GggCggT11B.1.1.2630.001558
ORF1ab/nsp2115G115GggCggT11B.1.1.2860.002899
ORF1ab/nsp2115G115GggCggT11B.1.1.3040.002809
ORF1ab/nsp2115G115GggCggT11B.1.1.3200.018182
ORF1ab/nsp2115G115GggCggT11B.1.1.3330.001076
ORF1ab/nsp2115G115GggCggT11B.1.1.3480.000796
ORF1ab/nsp2115G115GggCggT11B.1.1.3740.002375
ORF1ab/nsp2115G115GggCggT11B.1.1.3920.052632
ORF1ab/nsp2115G115GggCggT11B.1.1.3970.002252
ORF1ab/nsp2115G115GggCggT11B.1.1.4160.000905
ORF1ab/nsp2115G115GggCggT11B.1.1.4200.001006
ORF1ab/nsp2115G115GggCggT11B.1.1.4340.000349
ORF1ab/nsp2115G115GggCggT11B.1.1.4480.002033
ORF1ab/nsp2115G115GggCggT11B.1.1.990.02381
ORF1ab/nsp2115G115GggCggT11B.1.1470.000756
ORF1ab/nsp2115G115GggCggT11B.1.160.290.004219
ORF1ab/nsp2115G115GggCggT11B.1.160.300.002976
ORF1ab/nsp2115G115GggCggT11B.1.1700.00431
ORF1ab/nsp2115G115GggCggT11B.1.177.100.000878
ORF1ab/nsp2115G115GggCggT11B.1.177.120.000152
ORF1ab/nsp2115G115GggCggT11B.1.177.40.000211
ORF1ab/nsp2115G115GggCggT11B.1.177.70.000165
ORF1ab/nsp2115G115GggCggT11B.1.177.80.000752
ORF1ab/nsp2115G115GggCggT11B.1.2010.005682
ORF1ab/nsp2115G115GggCggT11B.1.2210.000071
ORF1ab/nsp2115G115GggCggT11B.1.258.90.005
ORF1ab/nsp2115G115GggCggT11B.1.3320.003497
ORF1ab/nsp2115G115GggCggT11B.1.3360.002439
ORF1ab/nsp2115G115GggCggT11B.1.3460.001311
ORF1ab/nsp2115G115GggCggT11B.1.3500.002933
ORF1ab/nsp2115G115GggCggT11B.1.4080.00369
ORF1ab/nsp2115G115GggCggT11B.1.428.30.012821
ORF1ab/nsp2115G115GggCggT11B.1.4410.009615
ORF1ab/nsp2115G115GggCggT11B.1.4740.001901
ORF1ab/nsp2115G115GggCggT11B.1.4800.002488
ORF1ab/nsp2115G115GggCggT11B.1.5110.034483
ORF1ab/nsp2115G115GggCggT11B.1.5170.000427
ORF1ab/nsp2115G115GggCggT11B.1.5490.007194
ORF1ab/nsp2115G115GggCggT11B.1.5540.004405
ORF1ab/nsp2115G115GggCggT11B.1.5680.001111
ORF1ab/nsp2115G115GggCggT11B.1.6190.000871
ORF1ab/nsp2115G115GggCggT11B.1.6250.002353
ORF1ab/nsp2115G115GggCggT11B.1.88.10.004808
ORF1ab/nsp2115G115GggCggT11B.450.003831
ORF1ab/nsp2115G115GggCggT11C.10.002392
ORF1ab/nsp2115G115GggCggT11C.130.025641
ORF1ab/nsp2115G115GggCggT11D.20.000075
ORF1ab/nsp2115G115GggCggT11K.10.02381
ORF1ab/nsp2115G115GggCggT11P.1.100.000269
ORF1ab/nsp2115G115GggCggT11P.1.60.001946
ORF1ab/nsp2115G115GggCggT11P.40.003802
ORF1ab/nsp2115G115GggCggT11Q.10.000126
ORF1ab/nsp2115G115GggCggT11Q.30.000145
ORF1ab/nsp2115G115GggCggT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.