CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 113

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2113L113FL293FnonsynCttTtt8238220.9987851142-1144
ORF1ab/nsp2113L113FL293FnonsynCtTTtC82310.001215071142-1144
ORF1ab/nsp2113L113LL293LsynctTctC2161700.7870371142-1144
ORF1ab/nsp2113L113LL293LsynctTctA216340.1574071142-1144
ORF1ab/nsp2113L113LL293LsynctTctG216110.05092591142-1144
ORF1ab/nsp2113L113LL293LsynCtTTtA21610.004629631142-1144
ORF1ab/nsp2113L113VL293VnonsynCttGtt78760.9743591142-1144
ORF1ab/nsp2113L113VL293VnonsynCtTGtA7810.01282051142-1144
ORF1ab/nsp2113L113VL293VnonsynCtTGtC7810.01282051142-1144
ORF1ab/nsp2113L113RL293RnonsyncTtcGt555511142-1144
ORF1ab/nsp2113L113PL293PnonsyncTtcCt50490.981142-1144
ORF1ab/nsp2113L113PL293PnonsyncTTcCC5010.021142-1144
ORF1ab/nsp2113L113IL293InonsynCttAtt45440.9777781142-1144
ORF1ab/nsp2113L113IL293InonsynCtTAtA4510.02222221142-1144
ORF1ab/nsp2113L113delL293deldelCTT---444411142-1144
ORF1ab/nsp2113L113del1L293del1delCtt-tt2211142-1144
ORF1ab/nsp2113L113del2L293del2delCTT--C210.51142-1144
ORF1ab/nsp2113L113del2L293del2delcTTc--210.51142-1144
ORF1ab/nsp2113L113HL293HnonsyncTtcAt1111142-1144
ORF1ab/nsp2113L113KL293KnonsynCTTAAA1111142-1144
ORF1ab/nsp2113L113YL293YnonsynCTtTAt1111142-1144
ORF1ab/nsp2113L113AL293AnonsynCTTGCA1111142-1144

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2113L113FCttTtt822823All0.000157
ORF1ab/nsp2113L113FCtTTtC1823All0
ORF1ab/nsp2113L113FCttTtt217217B.1.1.70.000194
ORF1ab/nsp2113L113LctTctC170216All0.000033
ORF1ab/nsp2113L113LctTctA34216All0.000007
ORF1ab/nsp2113L113LctTctG11216All0.000002
ORF1ab/nsp2113L113LCtTTtA1216All0
ORF1ab/nsp2113L113FCttTtt8383B.1.177.570.023321
ORF1ab/nsp2113L113VCttGtt7678All0.000015
ORF1ab/nsp2113L113VCtTGtC178All0
ORF1ab/nsp2113L113VCtTGtA178All0
ORF1ab/nsp2113L113FCttTtt5858AY.30.000577
ORF1ab/nsp2113L113LctTctC5658B.1.617.20.000211
ORF1ab/nsp2113L113LctTctA158B.1.617.20.000004
ORF1ab/nsp2113L113LctTctG158B.1.617.20.000004
ORF1ab/nsp2113L113RcTtcGt5555All0.000011
ORF1ab/nsp2113L113FCttTtt5252AY.40.000081
ORF1ab/nsp2113L113PcTtcCt4950All0.000009
ORF1ab/nsp2113L113PcTTcCC150All0
ORF1ab/nsp2113L113ICttAtt4445All0.000008
ORF1ab/nsp2113L113ICtTAtA145All0
ORF1ab/nsp2113L113delCTT---4444All0.000008
ORF1ab/nsp2113L113FCttTtt4242B.1.1.5240.875
ORF1ab/nsp2113L113LctTctC4041AY.1000.00184
ORF1ab/nsp2113L113LctTctA141AY.1000.000046
ORF1ab/nsp2113L113VCttGtt3737AY.450.004502
ORF1ab/nsp2113L113FCttTtt2727B.1.20.000238
ORF1ab/nsp2113L113FCttTtt2222B.1.617.20.000083
ORF1ab/nsp2113L113RcTtcGt2121B.1.1.70.000019
ORF1ab/nsp2113L113FCttTtt1919AY.440.000116
ORF1ab/nsp2113L113FCttTtt1919B.1.5260.000447
ORF1ab/nsp2113L113LctTctA1818B.1.1770.000237
ORF1ab/nsp2113L113FCttTtt1818P.10.000284
ORF1ab/nsp2113L113FCttTtt1617B.1.10.00029
ORF1ab/nsp2113L113FCtTTtC117B.1.10.000018
ORF1ab/nsp2113L113LctTctC1317B.1.1.70.000012
ORF1ab/nsp2113L113LctTctG217B.1.1.70.000002
ORF1ab/nsp2113L113LctTctA217B.1.1.70.000002
ORF1ab/nsp2113L113VCttGtt1616AY.1020.000424
ORF1ab/nsp2113L113FCttTtt1616AY.1020.000424
ORF1ab/nsp2113L113LctTctC1416AY.40.000022
ORF1ab/nsp2113L113LctTctA216AY.40.000003
ORF1ab/nsp2113L113RcTtcGt1515B.1.1600.000468
ORF1ab/nsp2113L113VCttGtt1515B.1.617.20.000056
ORF1ab/nsp2113L113FCttTtt1414B.1.6370.001023
ORF1ab/nsp2113L113ICttAtt1313AY.440.000079
ORF1ab/nsp2113L113FCttTtt1212AY.290.000189
ORF1ab/nsp2113L113FCttTtt1212B.1.258.170.001248
ORF1ab/nsp2113L113FCttTtt1111AY.1030.000068
ORF1ab/nsp2113L113FCttTtt1111AY.430.000049
ORF1ab/nsp2113L113FCttTtt1111B.10.000101
ORF1ab/nsp2113L113delCTT---1111B.1.1.70.00001
ORF1ab/nsp2113L113FCttTtt1111B.1.3510.000327
ORF1ab/nsp2113L113FCttTtt1010B.1.1.5190.000397
ORF1ab/nsp2113L113PcTtcCt910B.1.1.70.000008
ORF1ab/nsp2113L113PcTTcCC110B.1.1.70.000001
ORF1ab/nsp2113L113PcTtcCt99AY.40.000014
ORF1ab/nsp2113L113LctTctC99P.10.000142
ORF1ab/nsp2113L113PcTtcCt88B.1.177.210.000612
ORF1ab/nsp2113L113FCttTtt88B.1.830.123077
ORF1ab/nsp2113L113FCttTtt77AY.250.000042
ORF1ab/nsp2113L113LctTctC57AY.30.00005
ORF1ab/nsp2113L113LctTctG27AY.30.00002
ORF1ab/nsp2113L113FCttTtt77B.1.1600.000218
ORF1ab/nsp2113L113FCttTtt77B.1.1770.000092
ORF1ab/nsp2113L113FCttTtt66AY.9.20.00022
ORF1ab/nsp2113L113LctTctC66AY.920.001724
ORF1ab/nsp2113L113FCttTtt55AY.390.000124
ORF1ab/nsp2113L113LctTctC25B.1.10.000036
ORF1ab/nsp2113L113LctTctA15B.1.10.000018
ORF1ab/nsp2113L113LctTctG15B.1.10.000018
ORF1ab/nsp2113L113LCtTTtA15B.1.10.000018
ORF1ab/nsp2113L113delCTT---55B.1.1.330.002104
ORF1ab/nsp2113L113ICttAtt55B.1.1.70.000004
ORF1ab/nsp2113L113ICttAtt45B.1.617.20.000015
ORF1ab/nsp2113L113ICtTAtA15B.1.617.20.000004
ORF1ab/nsp2113L113delCTT---440.222222
ORF1ab/nsp2113L113FCttTtt44AY.1160.001147
ORF1ab/nsp2113L113ICttAtt44B.10.000037
ORF1ab/nsp2113L113PcTtcCt44B.1.10.000073
ORF1ab/nsp2113L113delCTT---44B.1.1.3480.003185
ORF1ab/nsp2113L113FCttTtt44B.1.177.540.002426
ORF1ab/nsp2113L113FCttTtt44B.1.2430.000278
ORF1ab/nsp2113L113FCttTtt44B.1.4290.000094
ORF1ab/nsp2113L113LctTctG34B.1.4290.000071
ORF1ab/nsp2113L113LctTctC14B.1.4290.000024
ORF1ab/nsp2113L113LctTctC33AY.1170.000254
ORF1ab/nsp2113L113PcTtcCt33AY.260.000085
ORF1ab/nsp2113L113LctTctC23AY.430.000009
ORF1ab/nsp2113L113LctTctA13AY.430.000004
ORF1ab/nsp2113L113LctTctC33AY.440.000018
ORF1ab/nsp2113L113VCttGtt33AY.460.000312
ORF1ab/nsp2113L113FCttTtt33AY.470.000093
ORF1ab/nsp2113L113RcTtcGt33AY.550.002752
ORF1ab/nsp2113L113FCttTtt33AY.740.000347
ORF1ab/nsp2113L113FCttTtt33AY.980.000237
ORF1ab/nsp2113L113VCtTGtC13B.1.10.000018
ORF1ab/nsp2113L113VCtTGtA13B.1.10.000018
ORF1ab/nsp2113L113VCttGtt13B.1.10.000018
ORF1ab/nsp2113L113RcTtcGt33B.1.20.000026
ORF1ab/nsp2113L113FCttTtt33B.1.2340.000396
ORF1ab/nsp2113L113FCttTtt33B.1.2580.0002
ORF1ab/nsp2113L113FCttTtt33B.1.5760.00272
ORF1ab/nsp2113L113delCTT---33B.1.617.20.000011
ORF1ab/nsp2113L113del1Ctt-tt22All0
ORF1ab/nsp2113L113del2CTT--C12All0
ORF1ab/nsp2113L113del2cTTc--12All0
ORF1ab/nsp2113L113LctTctC12AY.1030.000006
ORF1ab/nsp2113L113LctTctA12AY.1030.000006
ORF1ab/nsp2113L113FCttTtt22AY.1050.001286
ORF1ab/nsp2113L113ICttAtt22AY.120.10.000642
ORF1ab/nsp2113L113PcTtcCt22AY.200.000078
ORF1ab/nsp2113L113FCttTtt22AY.230.000139
ORF1ab/nsp2113L113PcTtcCt22AY.250.000012
ORF1ab/nsp2113L113FCttTtt22AY.260.000057
ORF1ab/nsp2113L113ICttAtt22AY.290.000032
ORF1ab/nsp2113L113RcTtcGt22AY.30.00002
ORF1ab/nsp2113L113delCTT---22AY.430.000009
ORF1ab/nsp2113L113ICttAtt22AY.430.000009
ORF1ab/nsp2113L113RcTtcGt22AY.440.000012
ORF1ab/nsp2113L113VCttGtt22AY.440.000012
ORF1ab/nsp2113L113LctTctC22AY.840.000875
ORF1ab/nsp2113L113ICttAtt22B.1.1.2220.000408
ORF1ab/nsp2113L113FCttTtt22B.1.1.2770.001517
ORF1ab/nsp2113L113LctTctC22B.1.1.4340.000697
ORF1ab/nsp2113L113RcTtcGt22B.1.1770.000026
ORF1ab/nsp2113L113FCttTtt22B.1.177.70.00033
ORF1ab/nsp2113L113LctTctC22B.1.20.000018
ORF1ab/nsp2113L113FCttTtt22B.1.258.140.001961
ORF1ab/nsp2113L113FCttTtt22B.1.3320.006993
ORF1ab/nsp2113L113FCttTtt22B.1.4040.002604
ORF1ab/nsp2113L113delCTT---22B.1.4290.000047
ORF1ab/nsp2113L113FCttTtt22B.1.466.20.000782
ORF1ab/nsp2113L113FCttTtt22B.1.5960.000174
ORF1ab/nsp2113L113ICttAtt22B.1.617.10.000258
ORF1ab/nsp2113L113FCttTtt22B.1.6270.00404
ORF1ab/nsp2113L113FCttTtt22C.370.000232
ORF1ab/nsp2113L113delCTT---22N.60.014184
ORF1ab/nsp2113L113delCTT---22P.20.000373
ORF1ab/nsp2113L113ACTTGCA11All0
ORF1ab/nsp2113L113YCTtTAt11All0
ORF1ab/nsp2113L113KCTTAAA11All0
ORF1ab/nsp2113L113HcTtcAt11All0
ORF1ab/nsp2113L113ICttAtt11AY.1000.000046
ORF1ab/nsp2113L113LctTctA11AY.1020.000027
ORF1ab/nsp2113L113YCTtTAt11AY.1030.000006
ORF1ab/nsp2113L113LctTctC11AY.1180.000063
ORF1ab/nsp2113L113FCttTtt11AY.1180.000063
ORF1ab/nsp2113L113FCttTtt11AY.1200.000037
ORF1ab/nsp2113L113FCttTtt11AY.1210.000135
ORF1ab/nsp2113L113FCttTtt11AY.130.000161
ORF1ab/nsp2113L113FCttTtt11AY.160.00038
ORF1ab/nsp2113L113delCTT---11AY.190.00114
ORF1ab/nsp2113L113FCttTtt11AY.200.000039
ORF1ab/nsp2113L113LctTctC11AY.230.00007
ORF1ab/nsp2113L113LctTctA11AY.290.000016
ORF1ab/nsp2113L113ICttAtt11AY.30.00001
ORF1ab/nsp2113L113RcTtcGt11AY.300.000396
ORF1ab/nsp2113L113FCttTtt11AY.360.000148
ORF1ab/nsp2113L113FCttTtt11AY.370.000316
ORF1ab/nsp2113L113PcTtcCt11AY.380.000499
ORF1ab/nsp2113L113FCttTtt11AY.380.000499
ORF1ab/nsp2113L113delCTT---11AY.40.000002
ORF1ab/nsp2113L113ICttAtt11AY.40.000002
ORF1ab/nsp2113L113RcTtcGt11AY.40.000002
ORF1ab/nsp2113L113LctTctG11AY.4.20.000022
ORF1ab/nsp2113L113VCttGtt11AY.430.000004
ORF1ab/nsp2113L113PcTtcCt11AY.430.000004
ORF1ab/nsp2113L113del1Ctt-tt11AY.430.000004
ORF1ab/nsp2113L113delCTT---11AY.440.000006
ORF1ab/nsp2113L113PcTtcCt11AY.440.000006
ORF1ab/nsp2113L113LctTctA11AY.450.000122
ORF1ab/nsp2113L113FCttTtt11AY.460.000104
ORF1ab/nsp2113L113LctTctA11AY.46.10.001027
ORF1ab/nsp2113L113FCttTtt11AY.46.60.000072
ORF1ab/nsp2113L113PcTtcCt11AY.50.000021
ORF1ab/nsp2113L113LctTctA11AY.50.000021
ORF1ab/nsp2113L113FCttTtt11AY.50.000021
ORF1ab/nsp2113L113ICttAtt11AY.570.000656
ORF1ab/nsp2113L113delCTT---11AY.620.000436
ORF1ab/nsp2113L113del1Ctt-tt11AY.670.000464
ORF1ab/nsp2113L113FCttTtt11AY.75.10.00018
ORF1ab/nsp2113L113PcTtcCt11AY.800.001129
ORF1ab/nsp2113L113delCTT---11AY.840.000437
ORF1ab/nsp2113L113ICttAtt11AY.840.000437
ORF1ab/nsp2113L113FCttTtt11AY.90.000068
ORF1ab/nsp2113L113LctTctC11AY.90.000068
ORF1ab/nsp2113L113LctTctA11AY.9.10.000084
ORF1ab/nsp2113L113ICttAtt11AY.9.20.000037
ORF1ab/nsp2113L113ICttAtt11AY.980.000079
ORF1ab/nsp2113L113FCttTtt11AY.98.10.000048
ORF1ab/nsp2113L113KCTTAAA11AY.990.001049
ORF1ab/nsp2113L113FCttTtt11B0.000128
ORF1ab/nsp2113L113PcTtcCt11B.10.000009
ORF1ab/nsp2113L113HcTtcAt11B.1.10.000018
ORF1ab/nsp2113L113RcTtcGt11B.1.1.2140.000055
ORF1ab/nsp2113L113FCttTtt11B.1.1.2140.000055
ORF1ab/nsp2113L113FCttTtt11B.1.1.3060.000438
ORF1ab/nsp2113L113FCttTtt11B.1.1.3160.000925
ORF1ab/nsp2113L113PcTtcCt11B.1.1.3160.000925
ORF1ab/nsp2113L113FCttTtt11B.1.1.3180.000302
ORF1ab/nsp2113L113FCttTtt11B.1.1.3970.002252
ORF1ab/nsp2113L113FCttTtt11B.1.1.4090.002833
ORF1ab/nsp2113L113PcTtcCt11B.1.1.5190.00004
ORF1ab/nsp2113L113LctTctC11B.1.1.5190.00004
ORF1ab/nsp2113L113FCttTtt11B.1.1.5280.004808
ORF1ab/nsp2113L113del2cTTc--11B.1.1.70.000001
ORF1ab/nsp2113L113VCttGtt11B.1.1.70.000001
ORF1ab/nsp2113L113LctTctC11B.1.1110.001175
ORF1ab/nsp2113L113FCttTtt11B.1.1400.018868
ORF1ab/nsp2113L113delCTT---11B.1.1770.000013
ORF1ab/nsp2113L113FCttTtt11B.1.177.120.000152
ORF1ab/nsp2113L113FCttTtt11B.1.177.350.000691
ORF1ab/nsp2113L113FCttTtt11B.1.177.40.000211
ORF1ab/nsp2113L113PcTtcCt11B.1.177.560.000668
ORF1ab/nsp2113L113delCTT---11B.1.177.70.000165
ORF1ab/nsp2113L113FCttTtt11B.1.2060.000816
ORF1ab/nsp2113L113RcTtcGt11B.1.214.20.0006
ORF1ab/nsp2113L113PcTtcCt11B.1.2340.000132
ORF1ab/nsp2113L113LctTctC11B.1.3110.000275
ORF1ab/nsp2113L113FCttTtt11B.1.3180.038462
ORF1ab/nsp2113L113FCttTtt11B.1.3250.006897
ORF1ab/nsp2113L113FCttTtt11B.1.351.20.000303
ORF1ab/nsp2113L113RcTtcGt11B.1.360.000146
ORF1ab/nsp2113L113FCttTtt11B.1.360.000146
ORF1ab/nsp2113L113FCttTtt11B.1.3960.000706
ORF1ab/nsp2113L113FCttTtt11B.1.4160.001269
ORF1ab/nsp2113L113ICttAtt11B.1.438.10.000107
ORF1ab/nsp2113L113LctTctG11B.1.4590.004082
ORF1ab/nsp2113L113FCttTtt11B.1.5050.004386
ORF1ab/nsp2113L113FCttTtt11B.1.5240.001406
ORF1ab/nsp2113L113LctTctA11B.1.5260.000024
ORF1ab/nsp2113L113FCttTtt11B.1.5380.008065
ORF1ab/nsp2113L113FCttTtt11B.1.5390.017544
ORF1ab/nsp2113L113PcTtcCt11B.1.617.20.000004
ORF1ab/nsp2113L113ACTTGCA11B.1.617.20.000004
ORF1ab/nsp2113L113del2CTT--C11B.1.617.20.000004
ORF1ab/nsp2113L113RcTtcGt11B.1.617.20.000004
ORF1ab/nsp2113L113FCttTtt11B.1.6210.000089
ORF1ab/nsp2113L113RcTtcGt11B.400.000364
ORF1ab/nsp2113L113FCttTtt11D.20.000075
ORF1ab/nsp2113L113delCTT---11N.40.004255
ORF1ab/nsp2113L113FCttTtt11P.1.100.000269
ORF1ab/nsp2113L113FCttTtt11P.1.140.000048
ORF1ab/nsp2113L113FCttTtt11P.1.150.000232
ORF1ab/nsp2113L113LctTctC11P.1.150.000232
ORF1ab/nsp2113L113PcTtcCt11P.20.000187
ORF1ab/nsp2113L113delCTT---11Q.10.000126
ORF1ab/nsp2113L113LctTctC11Q.40.000455
ORF1ab/nsp2113L113LctTctC11R.10.00009