CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 113 | L113F | L293F | nonsyn | Ctt | Ttt | 823 | 822 | 0.998785 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113F | L293F | nonsyn | CtT | TtC | 823 | 1 | 0.00121507 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113L | L293L | syn | ctT | ctC | 216 | 170 | 0.787037 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113L | L293L | syn | ctT | ctA | 216 | 34 | 0.157407 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113L | L293L | syn | ctT | ctG | 216 | 11 | 0.0509259 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113L | L293L | syn | CtT | TtA | 216 | 1 | 0.00462963 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113V | L293V | nonsyn | Ctt | Gtt | 78 | 76 | 0.974359 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113V | L293V | nonsyn | CtT | GtA | 78 | 1 | 0.0128205 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113V | L293V | nonsyn | CtT | GtC | 78 | 1 | 0.0128205 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113R | L293R | nonsyn | cTt | cGt | 55 | 55 | 1 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113P | L293P | nonsyn | cTt | cCt | 50 | 49 | 0.98 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113P | L293P | nonsyn | cTT | cCC | 50 | 1 | 0.02 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113I | L293I | nonsyn | Ctt | Att | 45 | 44 | 0.977778 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113I | L293I | nonsyn | CtT | AtA | 45 | 1 | 0.0222222 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113del | L293del | del | CTT | --- | 44 | 44 | 1 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113del1 | L293del1 | del | Ctt | -tt | 2 | 2 | 1 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113del2 | L293del2 | del | CTT | --C | 2 | 1 | 0.5 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113del2 | L293del2 | del | cTT | c-- | 2 | 1 | 0.5 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113H | L293H | nonsyn | cTt | cAt | 1 | 1 | 1 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113K | L293K | nonsyn | CTT | AAA | 1 | 1 | 1 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113Y | L293Y | nonsyn | CTt | TAt | 1 | 1 | 1 | 1142-1144 |
ORF1ab/nsp2 | 113 | L113A | L293A | nonsyn | CTT | GCA | 1 | 1 | 1 | 1142-1144 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 822 | 823 | All | 0.000157 |
ORF1ab/nsp2 | 113 | L113F | CtT | TtC | 1 | 823 | All | 0 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 217 | 217 | B.1.1.7 | 0.000194 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 170 | 216 | All | 0.000033 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 34 | 216 | All | 0.000007 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 11 | 216 | All | 0.000002 |
ORF1ab/nsp2 | 113 | L113L | CtT | TtA | 1 | 216 | All | 0 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 83 | 83 | B.1.177.57 | 0.023321 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 76 | 78 | All | 0.000015 |
ORF1ab/nsp2 | 113 | L113V | CtT | GtC | 1 | 78 | All | 0 |
ORF1ab/nsp2 | 113 | L113V | CtT | GtA | 1 | 78 | All | 0 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 58 | 58 | AY.3 | 0.000577 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 56 | 58 | B.1.617.2 | 0.000211 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 58 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 1 | 58 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 55 | 55 | All | 0.000011 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 52 | 52 | AY.4 | 0.000081 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 49 | 50 | All | 0.000009 |
ORF1ab/nsp2 | 113 | L113P | cTT | cCC | 1 | 50 | All | 0 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 44 | 45 | All | 0.000008 |
ORF1ab/nsp2 | 113 | L113I | CtT | AtA | 1 | 45 | All | 0 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 44 | 44 | All | 0.000008 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 42 | 42 | B.1.1.524 | 0.875 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 40 | 41 | AY.100 | 0.00184 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 41 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 37 | 37 | AY.45 | 0.004502 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 27 | 27 | B.1.2 | 0.000238 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 22 | 22 | B.1.617.2 | 0.000083 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 19 | 19 | AY.44 | 0.000116 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 19 | 19 | B.1.526 | 0.000447 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 16 | 17 | B.1.1 | 0.00029 |
ORF1ab/nsp2 | 113 | L113F | CtT | TtC | 1 | 17 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 13 | 17 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 2 | 17 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 2 | 17 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 14 | 16 | AY.4 | 0.000022 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 2 | 16 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 12 | 12 | B.1.258.17 | 0.001248 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 9 | 10 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 113 | L113P | cTT | cCC | 1 | 10 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 8 | 8 | B.1.177.21 | 0.000612 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 8 | 8 | B.1.83 | 0.123077 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 5 | 7 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 2 | 7 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 6 | 6 | AY.92 | 0.001724 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113L | CtT | TtA | 1 | 5 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 113 | L113I | CtT | AtA | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 4 | 4 | B.1.177.54 | 0.002426 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 3 | 4 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 4 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 3 | 3 | AY.55 | 0.002752 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 113 | L113V | CtT | GtC | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113V | CtT | GtA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 113 | L113del1 | Ctt | -tt | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 113 | L113del2 | CTT | --C | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 113 | L113del2 | cTT | c-- | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 113 | L113A | CTT | GCA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 113 | L113Y | CTt | TAt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 113 | L113K | CTT | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 113 | L113H | cTt | cAt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 113 | L113Y | CTt | TAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 113 | L113del1 | Ctt | -tt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 113 | L113del1 | Ctt | -tt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 113 | L113K | CTT | AAA | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 113 | L113H | cTt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp2 | 113 | L113del2 | cTT | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 113 | L113V | Ctt | Gtt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.318 | 0.038462 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 113 | L113I | Ctt | Att | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctG | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 113 | L113A | CTT | GCA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 113 | L113del2 | CTT | --C | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 113 | L113R | cTt | cGt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 113 | L113F | Ctt | Ttt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 113 | L113P | cTt | cCt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 113 | L113del | CTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 113 | L113L | ctT | ctC | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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