CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 106 | P106L | P286L | nonsyn | cCa | cTa | 1591 | 1586 | 0.996857 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106L | P286L | nonsyn | CCa | TTa | 1591 | 3 | 0.00188561 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106L | P286L | nonsyn | cCA | cTT | 1591 | 2 | 0.00125707 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106S | P286S | nonsyn | Cca | Tca | 963 | 963 | 1 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106P | P286P | syn | ccA | ccG | 588 | 405 | 0.688776 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106P | P286P | syn | ccA | ccT | 588 | 172 | 0.292517 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106P | P286P | syn | ccA | ccC | 588 | 11 | 0.0187075 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106T | P286T | nonsyn | Cca | Aca | 143 | 143 | 1 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106del | P286del | del | CCA | --- | 56 | 56 | 1 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106Q | P286Q | nonsyn | cCa | cAa | 44 | 44 | 1 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106A | P286A | nonsyn | Cca | Gca | 5 | 4 | 0.8 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106R | P286R | nonsyn | cCa | cGa | 5 | 3 | 0.6 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106R | P286R | nonsyn | cCA | cGG | 5 | 2 | 0.4 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106A | P286A | nonsyn | CcA | GcG | 5 | 1 | 0.2 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106del1 | P286del1 | del | ccA | cc- | 3 | 2 | 0.666667 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106del1 | P286del1 | del | Cca | -ca | 3 | 1 | 0.333333 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106del2 | P286del2 | del | cCA | c-- | 1 | 1 | 1 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106K | P286K | nonsyn | CCa | AAa | 1 | 1 | 1 | 1121-1123 |
ORF1ab/nsp2 | 106 | P106W | P286W | nonsyn | CCA | TGG | 1 | 1 | 1 | 1121-1123 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1586 | 1591 | All | 0.000303 |
ORF1ab/nsp2 | 106 | P106L | CCa | TTa | 3 | 1591 | All | 0.000001 |
ORF1ab/nsp2 | 106 | P106L | cCA | cTT | 2 | 1591 | All | 0 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 963 | 963 | All | 0.000184 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 599 | 599 | A.27 | 0.991722 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 405 | 588 | All | 0.000077 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 172 | 588 | All | 0.000033 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 11 | 588 | All | 0.000002 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 463 | 463 | B.1.36.21 | 1 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 407 | 407 | AY.4 | 0.000633 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 199 | 199 | AY.103 | 0.001236 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 150 | 150 | AY.25 | 0.000902 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 143 | 143 | All | 0.000027 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 105 | 105 | B.1.1.7 | 0.000094 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 85 | 85 | B.1.400 | 0.036465 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 72 | 72 | AY.4 | 0.000112 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 61 | 61 | AY.29 | 0.000962 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 58 | 58 | B.1.1.7 | 0.000052 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 56 | 56 | All | 0.000011 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 44 | 44 | All | 0.000008 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 32 | 32 | AY.99.2 | 0.002949 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 29 | 29 | AY.3 | 0.000288 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 26 | 29 | B.1.617.2 | 0.000098 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 2 | 29 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 1 | 29 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 28 | 28 | AY.25 | 0.000168 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 25 | 28 | B.1.1.7 | 0.000022 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 2 | 28 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 1 | 28 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 27 | 28 | B.1.617.2 | 0.000102 |
ORF1ab/nsp2 | 106 | P106L | CCa | TTa | 1 | 28 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 22 | 27 | B.1 | 0.000202 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 3 | 27 | B.1 | 0.000027 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 2 | 27 | B.1 | 0.000018 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 25 | 25 | B.1.617.2 | 0.000094 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 23 | 24 | AY.43 | 0.000102 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 24 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 23 | 23 | AY.98.1 | 0.001114 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 22 | 22 | B.1.429 | 0.000518 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 20 | 20 | AY.9.1 | 0.001674 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 12 | 19 | AY.4 | 0.000019 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 6 | 19 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 1 | 19 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 19 | 19 | B.1.1.4 | 0.056548 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 14 | 14 | AY.20 | 0.000544 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 13 | 14 | AY.44 | 0.000079 |
ORF1ab/nsp2 | 106 | P106L | cCA | cTT | 1 | 14 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 12 | 14 | P.1 | 0.000189 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 14 | P.1 | 0.000032 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 13 | 13 | A | 0.005031 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 11 | 12 | AY.26 | 0.000311 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 12 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 9 | 11 | AY.25 | 0.000054 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 11 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 10 | 10 | AY.111 | 0.001832 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 10 | 10 | B.1.1.517 | 0.068027 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 5 | 9 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 2 | 9 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 2 | 9 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 9 | 9 | AZ.1 | 0.007806 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 8 | 8 | B | 0.001022 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 8 | 8 | C.1.2 | 0.034043 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 7 | 7 | AY.64 | 0.004167 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 6 | 7 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 1 | 7 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 6 | 6 | AY.19 | 0.006842 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 6 | 6 | B.1.1.44 | 0.014458 |
ORF1ab/nsp2 | 106 | P106A | Cca | Gca | 4 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 106 | P106R | cCa | cGa | 3 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 106 | P106R | cCA | cGG | 2 | 5 | All | 0 |
ORF1ab/nsp2 | 106 | P106A | CcA | GcG | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 5 | 5 | B.1.1.189 | 0.007564 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 5 | 5 | B.1.1.306 | 0.002192 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 5 | 5 | B.1.558 | 0.022831 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 4 | 4 | AY.27 | 0.000259 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 3 | 3 | A.29 | 0.015957 |
ORF1ab/nsp2 | 106 | P106del1 | ccA | cc- | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 106 | P106del1 | Cca | -ca | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 1 | 3 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 3 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 3 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 3 | 3 | B.1.1.204 | 0.009119 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | B.1.218 | 0.015464 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 3 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 3 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 3 | 3 | B.1.420 | 0.03125 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 106 | P106L | CCa | TTa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 106 | P106R | cCa | cGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | A.2.5.1 | 0.009615 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccC | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | B.1.1.141 | 0.004024 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 106 | P106A | Cca | Gca | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 106 | P106R | cCA | cGG | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 106 | P106R | cCa | cGa | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 106 | P106del1 | ccA | cc- | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 2 | 2 | B.31 | 0.007463 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 2 | 2 | C.36.3.1 | 0.005435 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 2 | C.37 | 0.000116 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 106 | P106A | Cca | Gca | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | A.7 | 0.055556 |
ORF1ab/nsp2 | 106 | P106del2 | cCA | c-- | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 106 | P106K | CCa | AAa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 106 | P106W | CCA | TGG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 106 | P106A | CcA | GcG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 106 | P106del1 | Cca | -ca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 106 | P106L | cCA | cTT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 106 | P106W | CCA | TGG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 106 | P106R | cCA | cGG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 106 | P106del2 | cCA | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.166 | 0.008475 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.233 | 0.014085 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 106 | P106K | CCa | AAa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 106 | P106Q | cCa | cAa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | B.23 | 0.002924 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp2 | 106 | P106L | cCa | cTa | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp2 | 106 | P106T | Cca | Aca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 106 | P106S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 106 | P106del | CCA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 106 | P106P | ccA | ccG | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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