CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 106

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2106P106LP286LnonsyncCacTa159115860.9968571121-1123
ORF1ab/nsp2106P106LP286LnonsynCCaTTa159130.001885611121-1123
ORF1ab/nsp2106P106LP286LnonsyncCAcTT159120.001257071121-1123
ORF1ab/nsp2106P106SP286SnonsynCcaTca96396311121-1123
ORF1ab/nsp2106P106PP286PsynccAccG5884050.6887761121-1123
ORF1ab/nsp2106P106PP286PsynccAccT5881720.2925171121-1123
ORF1ab/nsp2106P106PP286PsynccAccC588110.01870751121-1123
ORF1ab/nsp2106P106TP286TnonsynCcaAca14314311121-1123
ORF1ab/nsp2106P106delP286deldelCCA---565611121-1123
ORF1ab/nsp2106P106QP286QnonsyncCacAa444411121-1123
ORF1ab/nsp2106P106AP286AnonsynCcaGca540.81121-1123
ORF1ab/nsp2106P106RP286RnonsyncCacGa530.61121-1123
ORF1ab/nsp2106P106RP286RnonsyncCAcGG520.41121-1123
ORF1ab/nsp2106P106AP286AnonsynCcAGcG510.21121-1123
ORF1ab/nsp2106P106del1P286del1delccAcc-320.6666671121-1123
ORF1ab/nsp2106P106del1P286del1delCca-ca310.3333331121-1123
ORF1ab/nsp2106P106del2P286del2delcCAc--1111121-1123
ORF1ab/nsp2106P106KP286KnonsynCCaAAa1111121-1123
ORF1ab/nsp2106P106WP286WnonsynCCATGG1111121-1123

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2106P106LcCacTa15861591All0.000303
ORF1ab/nsp2106P106LCCaTTa31591All0.000001
ORF1ab/nsp2106P106LcCAcTT21591All0
ORF1ab/nsp2106P106SCcaTca963963All0.000184
ORF1ab/nsp2106P106LcCacTa599599A.270.991722
ORF1ab/nsp2106P106PccAccG405588All0.000077
ORF1ab/nsp2106P106PccAccT172588All0.000033
ORF1ab/nsp2106P106PccAccC11588All0.000002
ORF1ab/nsp2106P106LcCacTa463463B.1.36.211
ORF1ab/nsp2106P106SCcaTca407407AY.40.000633
ORF1ab/nsp2106P106PccAccG199199AY.1030.001236
ORF1ab/nsp2106P106SCcaTca150150AY.250.000902
ORF1ab/nsp2106P106TCcaAca143143All0.000027
ORF1ab/nsp2106P106SCcaTca105105B.1.1.70.000094
ORF1ab/nsp2106P106PccAccT8585B.1.4000.036465
ORF1ab/nsp2106P106LcCacTa7272AY.40.000112
ORF1ab/nsp2106P106SCcaTca6161AY.290.000962
ORF1ab/nsp2106P106LcCacTa5858B.1.1.70.000052
ORF1ab/nsp2106P106delCCA---5656All0.000011
ORF1ab/nsp2106P106QcCacAa4444All0.000008
ORF1ab/nsp2106P106LcCacTa3232AY.99.20.002949
ORF1ab/nsp2106P106TCcaAca2929AY.30.000288
ORF1ab/nsp2106P106PccAccG2629B.1.617.20.000098
ORF1ab/nsp2106P106PccAccT229B.1.617.20.000008
ORF1ab/nsp2106P106PccAccC129B.1.617.20.000004
ORF1ab/nsp2106P106LcCacTa2828AY.250.000168
ORF1ab/nsp2106P106PccAccG2528B.1.1.70.000022
ORF1ab/nsp2106P106PccAccT228B.1.1.70.000002
ORF1ab/nsp2106P106PccAccC128B.1.1.70.000001
ORF1ab/nsp2106P106LcCacTa2728B.1.617.20.000102
ORF1ab/nsp2106P106LCCaTTa128B.1.617.20.000004
ORF1ab/nsp2106P106PccAccG2227B.10.000202
ORF1ab/nsp2106P106PccAccT327B.10.000027
ORF1ab/nsp2106P106PccAccC227B.10.000018
ORF1ab/nsp2106P106SCcaTca2525B.1.617.20.000094
ORF1ab/nsp2106P106PccAccG2324AY.430.000102
ORF1ab/nsp2106P106PccAccT124AY.430.000004
ORF1ab/nsp2106P106LcCacTa2323AY.98.10.001114
ORF1ab/nsp2106P106TCcaAca2323B.1.1.70.000021
ORF1ab/nsp2106P106LcCacTa2222B.1.4290.000518
ORF1ab/nsp2106P106SCcaTca2121AY.1030.00013
ORF1ab/nsp2106P106LcCacTa2121B.10.000192
ORF1ab/nsp2106P106TCcaAca2020AY.9.10.001674
ORF1ab/nsp2106P106PccAccT1219AY.40.000019
ORF1ab/nsp2106P106PccAccG619AY.40.000009
ORF1ab/nsp2106P106PccAccC119AY.40.000002
ORF1ab/nsp2106P106SCcaTca1919B.1.1.40.056548
ORF1ab/nsp2106P106PccAccT1818AY.470.00056
ORF1ab/nsp2106P106SCcaTca1616B.10.000147
ORF1ab/nsp2106P106TCcaAca1515B.1.20.000132
ORF1ab/nsp2106P106LcCacTa1414AY.200.000544
ORF1ab/nsp2106P106LcCacTa1314AY.440.000079
ORF1ab/nsp2106P106LcCAcTT114AY.440.000006
ORF1ab/nsp2106P106LcCacTa1414B.1.1770.000184
ORF1ab/nsp2106P106PccAccT1214P.10.000189
ORF1ab/nsp2106P106PccAccG214P.10.000032
ORF1ab/nsp2106P106LcCacTa1313A0.005031
ORF1ab/nsp2106P106delCCA---1313B.1.1.70.000012
ORF1ab/nsp2106P106PccAccG1112AY.260.000311
ORF1ab/nsp2106P106PccAccT112AY.260.000028
ORF1ab/nsp2106P106LcCacTa1212AY.430.000053
ORF1ab/nsp2106P106TCcaAca1111AY.1030.000068
ORF1ab/nsp2106P106PccAccT911AY.250.000054
ORF1ab/nsp2106P106PccAccG211AY.250.000012
ORF1ab/nsp2106P106SCcaTca1010AY.1110.001832
ORF1ab/nsp2106P106LcCacTa1010B.1.1.5170.068027
ORF1ab/nsp2106P106LcCacTa1010B.1.1.5190.000397
ORF1ab/nsp2106P106SCcaTca1010B.1.1770.000132
ORF1ab/nsp2106P106SCcaTca1010B.1.20.000088
ORF1ab/nsp2106P106PccAccG59AY.440.00003
ORF1ab/nsp2106P106PccAccT29AY.440.000012
ORF1ab/nsp2106P106PccAccC29AY.440.000012
ORF1ab/nsp2106P106LcCacTa99AZ.10.007806
ORF1ab/nsp2106P106LcCacTa88B0.001022
ORF1ab/nsp2106P106SCcaTca88B.1.10.000145
ORF1ab/nsp2106P106LcCacTa88C.1.20.034043
ORF1ab/nsp2106P106QcCacAa88P.10.000126
ORF1ab/nsp2106P106LcCacTa88P.10.000126
ORF1ab/nsp2106P106LcCacTa77AY.390.000173
ORF1ab/nsp2106P106QcCacAa77AY.40.000011
ORF1ab/nsp2106P106LcCacTa77AY.640.004167
ORF1ab/nsp2106P106PccAccG67B.1.10.000109
ORF1ab/nsp2106P106PccAccC17B.1.10.000018
ORF1ab/nsp2106P106LcCacTa77B.1.20.000062
ORF1ab/nsp2106P106LcCacTa77B.1.6210.00062
ORF1ab/nsp2106P106TCcaAca66AY.190.006842
ORF1ab/nsp2106P106PccAccG66B.1.1.280.001867
ORF1ab/nsp2106P106TCcaAca66B.1.1.440.014458
ORF1ab/nsp2106P106ACcaGca45All0.000001
ORF1ab/nsp2106P106RcCacGa35All0.000001
ORF1ab/nsp2106P106RcCAcGG25All0
ORF1ab/nsp2106P106ACcAGcG15All0
ORF1ab/nsp2106P106LcCacTa55AY.30.00005
ORF1ab/nsp2106P106SCcaTca55AY.390.000124
ORF1ab/nsp2106P106delCCA---55AY.430.000022
ORF1ab/nsp2106P106SCcaTca55AY.440.00003
ORF1ab/nsp2106P106QcCacAa55B.1.1.1890.007564
ORF1ab/nsp2106P106SCcaTca55B.1.1.3060.002192
ORF1ab/nsp2106P106delCCA---55B.1.1.330.002104
ORF1ab/nsp2106P106LcCacTa55B.1.5580.022831
ORF1ab/nsp2106P106LcCacTa44AY.1030.000025
ORF1ab/nsp2106P106PccAccG44AY.270.000259
ORF1ab/nsp2106P106SCcaTca44AY.340.000388
ORF1ab/nsp2106P106SCcaTca44AY.39.10.000158
ORF1ab/nsp2106P106QcCacAa44AY.470.000124
ORF1ab/nsp2106P106SCcaTca44AY.7.10.000451
ORF1ab/nsp2106P106PccAccT44AY.99.20.000369
ORF1ab/nsp2106P106TCcaAca44B.10.000037
ORF1ab/nsp2106P106delCCA---44B.1.1.3480.003185
ORF1ab/nsp2106P106PccAccG44B.1.1600.000125
ORF1ab/nsp2106P106LcCacTa44B.1.1600.000125
ORF1ab/nsp2106P106SCcaTca44B.1.177.210.000306
ORF1ab/nsp2106P106SCcaTca44B.1.6090.001918
ORF1ab/nsp2106P106SCcaTca44P.10.000063
ORF1ab/nsp2106P106SCcaTca44P.1.140.000191
ORF1ab/nsp2106P106PccAccT33A.10.000846
ORF1ab/nsp2106P106LcCacTa33A.290.015957
ORF1ab/nsp2106P106del1ccAcc-23All0
ORF1ab/nsp2106P106del1Cca-ca13All0
ORF1ab/nsp2106P106SCcaTca33AY.1020.00008
ORF1ab/nsp2106P106PccAccG33AY.1020.00008
ORF1ab/nsp2106P106LcCacTa33AY.1190.000106
ORF1ab/nsp2106P106PccAccT33AY.1190.000106
ORF1ab/nsp2106P106TCcaAca33AY.260.000085
ORF1ab/nsp2106P106PccAccC13AY.30.00001
ORF1ab/nsp2106P106PccAccG13AY.30.00001
ORF1ab/nsp2106P106PccAccT13AY.30.00001
ORF1ab/nsp2106P106LcCacTa33AY.300.001187
ORF1ab/nsp2106P106SCcaTca33AY.330.0002
ORF1ab/nsp2106P106PccAccG33AY.60.000123
ORF1ab/nsp2106P106SCcaTca33AY.98.10.000145
ORF1ab/nsp2106P106LcCacTa33B.1.10.000054
ORF1ab/nsp2106P106TCcaAca33B.1.1.100.003344
ORF1ab/nsp2106P106PccAccG33B.1.1.2040.009119
ORF1ab/nsp2106P106PccAccG33B.1.1.370.000579
ORF1ab/nsp2106P106SCcaTca33B.1.1.5190.000119
ORF1ab/nsp2106P106QcCacAa33B.1.1.70.000003
ORF1ab/nsp2106P106SCcaTca33B.1.1110.003525
ORF1ab/nsp2106P106PccAccG33B.1.1770.00004
ORF1ab/nsp2106P106PccAccT13B.1.20.000009
ORF1ab/nsp2106P106PccAccC13B.1.20.000009
ORF1ab/nsp2106P106PccAccG13B.1.20.000009
ORF1ab/nsp2106P106SCcaTca33B.1.2180.015464
ORF1ab/nsp2106P106LcCacTa33B.1.2210.000213
ORF1ab/nsp2106P106SCcaTca33B.1.2580.0002
ORF1ab/nsp2106P106PccAccG23B.1.2580.000133
ORF1ab/nsp2106P106PccAccT13B.1.2580.000067
ORF1ab/nsp2106P106LcCacTa33B.1.3960.002117
ORF1ab/nsp2106P106LcCacTa33B.1.4200.03125
ORF1ab/nsp2106P106PccAccG33B.1.4290.000071
ORF1ab/nsp2106P106SCcaTca33B.1.5260.000071
ORF1ab/nsp2106P106TCcaAca33B.1.617.20.000011
ORF1ab/nsp2106P106LCCaTTa220.111111
ORF1ab/nsp2106P106RcCacGa220.111111
ORF1ab/nsp2106P106delCCA---220.111111
ORF1ab/nsp2106P106PccAccG22A.2.5.10.009615
ORF1ab/nsp2106P106LcCacTa22AY.1020.000053
ORF1ab/nsp2106P106SCcaTca22AY.140.000176
ORF1ab/nsp2106P106LcCacTa22AY.260.000057
ORF1ab/nsp2106P106PccAccG12AY.290.000016
ORF1ab/nsp2106P106PccAccC12AY.290.000016
ORF1ab/nsp2106P106LcCacTa22AY.39.10.000079
ORF1ab/nsp2106P106TCcaAca22AY.40.000003
ORF1ab/nsp2106P106delCCA---22AY.40.000003
ORF1ab/nsp2106P106SCcaTca22AY.4.20.000043
ORF1ab/nsp2106P106LcCacTa22AY.4.50.000215
ORF1ab/nsp2106P106delCCA---22AY.4.50.000215
ORF1ab/nsp2106P106LcCacTa22AY.420.00008
ORF1ab/nsp2106P106TCcaAca22AY.430.000009
ORF1ab/nsp2106P106SCcaTca22AY.430.000009
ORF1ab/nsp2106P106TCcaAca22AY.440.000012
ORF1ab/nsp2106P106PccAccG22AY.450.000243
ORF1ab/nsp2106P106QcCacAa22AY.46.50.000397
ORF1ab/nsp2106P106PccAccT12AY.46.60.000072
ORF1ab/nsp2106P106PccAccG12AY.46.60.000072
ORF1ab/nsp2106P106SCcaTca22AY.470.000062
ORF1ab/nsp2106P106QcCacAa22AY.50.000041
ORF1ab/nsp2106P106LcCacTa22AY.5.30.000675
ORF1ab/nsp2106P106SCcaTca22AY.60.000082
ORF1ab/nsp2106P106SCcaTca22AY.730.001331
ORF1ab/nsp2106P106SCcaTca22AY.840.000875
ORF1ab/nsp2106P106PccAccG22AY.90.000135
ORF1ab/nsp2106P106PccAccG22AY.990.002099
ORF1ab/nsp2106P106SCcaTca22B0.000256
ORF1ab/nsp2106P106LcCacTa22B.1.1.1410.004024
ORF1ab/nsp2106P106LcCacTa22B.1.1.2140.000111
ORF1ab/nsp2106P106PccAccG22B.1.1.5190.000079
ORF1ab/nsp2106P106delCCA---22B.1.1770.000026
ORF1ab/nsp2106P106ACcaGca22B.1.20.000018
ORF1ab/nsp2106P106SCcaTca22B.1.2210.000142
ORF1ab/nsp2106P106LcCacTa22B.1.2320.001075
ORF1ab/nsp2106P106LcCacTa22B.1.2580.000133
ORF1ab/nsp2106P106LcCacTa22B.1.3670.001585
ORF1ab/nsp2106P106QcCacAa22B.1.4290.000047
ORF1ab/nsp2106P106delCCA---22B.1.4290.000047
ORF1ab/nsp2106P106SCcaTca22B.1.4290.000047
ORF1ab/nsp2106P106LcCacTa22B.1.5260.000047
ORF1ab/nsp2106P106TCcaAca22B.1.5750.000607
ORF1ab/nsp2106P106PccAccG22B.1.5750.000607
ORF1ab/nsp2106P106PccAccG22B.1.617.10.000258
ORF1ab/nsp2106P106RcCAcGG12B.1.617.20.000004
ORF1ab/nsp2106P106RcCacGa12B.1.617.20.000004
ORF1ab/nsp2106P106PccAccG22B.1.6210.000177
ORF1ab/nsp2106P106del1ccAcc-22B.1.6270.00404
ORF1ab/nsp2106P106PccAccG22B.310.007463
ORF1ab/nsp2106P106LcCacTa22C.360.001821
ORF1ab/nsp2106P106LcCacTa22C.36.3.10.005435
ORF1ab/nsp2106P106PccAccT12C.370.000116
ORF1ab/nsp2106P106PccAccG12C.370.000116
ORF1ab/nsp2106P106delCCA---22N.60.014184
ORF1ab/nsp2106P106ACcaGca22P.20.000373
ORF1ab/nsp2106P106delCCA---22P.20.000373
ORF1ab/nsp2106P106LcCacTa11A.10.000282
ORF1ab/nsp2106P106LcCacTa11A.20.000662
ORF1ab/nsp2106P106PccAccG11A.70.055556
ORF1ab/nsp2106P106del2cCAc--11All0
ORF1ab/nsp2106P106KCCaAAa11All0
ORF1ab/nsp2106P106WCCATGG11All0
ORF1ab/nsp2106P106LcCacTa11AY.10.000396
ORF1ab/nsp2106P106SCcaTca11AY.1000.000046
ORF1ab/nsp2106P106ACcAGcG11AY.1030.000006
ORF1ab/nsp2106P106delCCA---11AY.1030.000006
ORF1ab/nsp2106P106SCcaTca11AY.1050.000643
ORF1ab/nsp2106P106SCcaTca11AY.1090.00074
ORF1ab/nsp2106P106PccAccT11AY.1130.000142
ORF1ab/nsp2106P106SCcaTca11AY.1140.000231
ORF1ab/nsp2106P106SCcaTca11AY.1160.000287
ORF1ab/nsp2106P106PccAccG11AY.1170.000085
ORF1ab/nsp2106P106SCcaTca11AY.1190.000035
ORF1ab/nsp2106P106LcCacTa11AY.1200.000037
ORF1ab/nsp2106P106SCcaTca11AY.1210.000135
ORF1ab/nsp2106P106LcCacTa11AY.1210.000135
ORF1ab/nsp2106P106LcCacTa11AY.130.000161
ORF1ab/nsp2106P106SCcaTca11AY.16.10.00047
ORF1ab/nsp2106P106TCcaAca11AY.200.000039
ORF1ab/nsp2106P106delCCA---11AY.250.000006
ORF1ab/nsp2106P106QcCacAa11AY.270.000065
ORF1ab/nsp2106P106TCcaAca11AY.270.000065
ORF1ab/nsp2106P106SCcaTca11AY.29.10.000221
ORF1ab/nsp2106P106SCcaTca11AY.30.00001
ORF1ab/nsp2106P106TCcaAca11AY.3.10.000085
ORF1ab/nsp2106P106SCcaTca11AY.3.10.000085
ORF1ab/nsp2106P106SCcaTca11AY.370.000316
ORF1ab/nsp2106P106QcCacAa11AY.390.000025
ORF1ab/nsp2106P106PccAccG11AY.4.20.000022
ORF1ab/nsp2106P106SCcaTca11AY.4.40.000409
ORF1ab/nsp2106P106PccAccG11AY.4.40.000409
ORF1ab/nsp2106P106SCcaTca11AY.420.00004
ORF1ab/nsp2106P106del1Cca-ca11AY.430.000004
ORF1ab/nsp2106P106LcCacTa11AY.450.000122
ORF1ab/nsp2106P106LcCacTa11AY.460.000104
ORF1ab/nsp2106P106PccAccT11AY.50.000021
ORF1ab/nsp2106P106TCcaAca11AY.540.000095
ORF1ab/nsp2106P106LcCacTa11AY.540.000095
ORF1ab/nsp2106P106PccAccG11AY.550.000917
ORF1ab/nsp2106P106TCcaAca11AY.570.000656
ORF1ab/nsp2106P106PccAccG11AY.590.00053
ORF1ab/nsp2106P106QcCacAa11AY.610.000105
ORF1ab/nsp2106P106delCCA---11AY.620.000436
ORF1ab/nsp2106P106delCCA---11AY.670.000464
ORF1ab/nsp2106P106SCcaTca11AY.750.000056
ORF1ab/nsp2106P106SCcaTca11AY.820.001357
ORF1ab/nsp2106P106delCCA---11AY.840.000437
ORF1ab/nsp2106P106PccAccG11AY.880.000884
ORF1ab/nsp2106P106SCcaTca11AY.9.20.000037
ORF1ab/nsp2106P106LcCAcTT11AY.990.001049
ORF1ab/nsp2106P106PccAccG11AZ.20.000821
ORF1ab/nsp2106P106PccAccG11B0.000128
ORF1ab/nsp2106P106WCCATGG11B0.000128
ORF1ab/nsp2106P106RcCAcGG11B0.000128
ORF1ab/nsp2106P106QcCacAa11B.10.000009
ORF1ab/nsp2106P106TCcaAca11B.1.10.000018
ORF1ab/nsp2106P106QcCacAa11B.1.10.000018
ORF1ab/nsp2106P106SCcaTca11B.1.1.1530.001095
ORF1ab/nsp2106P106LcCacTa11B.1.1.1610.003534
ORF1ab/nsp2106P106TCcaAca11B.1.1.1610.003534
ORF1ab/nsp2106P106PccAccT11B.1.1.1890.001513
ORF1ab/nsp2106P106SCcaTca11B.1.1.2220.000204
ORF1ab/nsp2106P106PccAccG11B.1.1.2220.000204
ORF1ab/nsp2106P106LcCacTa11B.1.1.250.000569
ORF1ab/nsp2106P106LcCacTa11B.1.1.2860.002899
ORF1ab/nsp2106P106LcCacTa11B.1.1.3010.001179
ORF1ab/nsp2106P106PccAccG11B.1.1.3170.000412
ORF1ab/nsp2106P106LcCacTa11B.1.1.3170.000412
ORF1ab/nsp2106P106PccAccG11B.1.1.3180.000302
ORF1ab/nsp2106P106QcCacAa11B.1.1.3260.001761
ORF1ab/nsp2106P106PccAccT11B.1.1.3980.003226
ORF1ab/nsp2106P106PccAccT11B.1.1.4160.000905
ORF1ab/nsp2106P106del2cCAc--11B.1.1.70.000001
ORF1ab/nsp2106P106PccAccT11B.1.110.30.000718
ORF1ab/nsp2106P106QcCacAa11B.1.1180.006711
ORF1ab/nsp2106P106QcCacAa11B.1.1260.001276
ORF1ab/nsp2106P106LcCacTa11B.1.160.330.004425
ORF1ab/nsp2106P106PccAccG11B.1.1660.008475
ORF1ab/nsp2106P106PccAccG11B.1.177.440.000519
ORF1ab/nsp2106P106delCCA---11B.1.177.540.000606
ORF1ab/nsp2106P106SCcaTca11B.1.177.570.000281
ORF1ab/nsp2106P106TCcaAca11B.1.177.70.000165
ORF1ab/nsp2106P106delCCA---11B.1.177.70.000165
ORF1ab/nsp2106P106SCcaTca11B.1.177.810.000189
ORF1ab/nsp2106P106PccAccG11B.1.177.860.000183
ORF1ab/nsp2106P106delCCA---11B.1.177.870.000728
ORF1ab/nsp2106P106delCCA---11B.1.177.90.001332
ORF1ab/nsp2106P106delCCA---11B.1.20.000009
ORF1ab/nsp2106P106QcCacAa11B.1.2210.000071
ORF1ab/nsp2106P106PccAccT11B.1.2330.014085
ORF1ab/nsp2106P106TCcaAca11B.1.2400.000216
ORF1ab/nsp2106P106QcCacAa11B.1.258.170.000104
ORF1ab/nsp2106P106delCCA---11B.1.258.30.001675
ORF1ab/nsp2106P106LcCacTa11B.1.2650.001271
ORF1ab/nsp2106P106LcCacTa11B.1.2800.007143
ORF1ab/nsp2106P106TCcaAca11B.1.3240.001605
ORF1ab/nsp2106P106SCcaTca11B.1.3330.010526
ORF1ab/nsp2106P106LcCacTa11B.1.3510.00003
ORF1ab/nsp2106P106KCCaAAa11B.1.3510.00003
ORF1ab/nsp2106P106SCcaTca11B.1.36.290.000517
ORF1ab/nsp2106P106SCcaTca11B.1.36.360.000602
ORF1ab/nsp2106P106PccAccG11B.1.3620.001541
ORF1ab/nsp2106P106LcCacTa11B.1.3690.000285
ORF1ab/nsp2106P106PccAccT11B.1.3830.009009
ORF1ab/nsp2106P106PccAccT11B.1.3990.001934
ORF1ab/nsp2106P106SCcaTca11B.1.4270.00005
ORF1ab/nsp2106P106LcCacTa11B.1.4270.00005
ORF1ab/nsp2106P106QcCacAa11B.1.4270.00005
ORF1ab/nsp2106P106SCcaTca11B.1.466.20.000391
ORF1ab/nsp2106P106PccAccG11B.1.466.20.000391
ORF1ab/nsp2106P106SCcaTca11B.1.5250.000113
ORF1ab/nsp2106P106LcCacTa11B.1.5640.000426
ORF1ab/nsp2106P106PccAccG11B.1.5770.000687
ORF1ab/nsp2106P106SCcaTca11B.1.5960.000087
ORF1ab/nsp2106P106delCCA---11B.1.5960.000087
ORF1ab/nsp2106P106LcCacTa11B.1.5960.000087
ORF1ab/nsp2106P106PccAccT11B.1.5960.000087
ORF1ab/nsp2106P106delCCA---11B.1.617.20.000004
ORF1ab/nsp2106P106TCcaAca11B.1.6210.000089
ORF1ab/nsp2106P106SCcaTca11B.1.6210.000089
ORF1ab/nsp2106P106SCcaTca11B.230.002924
ORF1ab/nsp2106P106LcCacTa11B.550.00295
ORF1ab/nsp2106P106LcCacTa11B.60.00091
ORF1ab/nsp2106P106LcCacTa11C.10.002392
ORF1ab/nsp2106P106LcCacTa11C.140.004329
ORF1ab/nsp2106P106LcCacTa11C.60.037037
ORF1ab/nsp2106P106PccAccG11D.20.000075
ORF1ab/nsp2106P106delCCA---11N.40.004255
ORF1ab/nsp2106P106TCcaAca11P.10.000016
ORF1ab/nsp2106P106SCcaTca11P.1.120.000484
ORF1ab/nsp2106P106PccAccG11P.1.140.000048
ORF1ab/nsp2106P106SCcaTca11P.1.150.000232
ORF1ab/nsp2106P106SCcaTca11P.1.170.000162
ORF1ab/nsp2106P106SCcaTca11P.20.000187
ORF1ab/nsp2106P106delCCA---11Q.10.000126
ORF1ab/nsp2106P106PccAccG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.