CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 101

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2101I101II281IsynatCatT133213100.9834831106-1108
ORF1ab/nsp2101I101II281IsynatCatA1332220.01651651106-1108
ORF1ab/nsp2101I101VI281VnonsynAtcGtc8918790.9865321106-1108
ORF1ab/nsp2101I101VI281VnonsynAtCGtT891120.0134681106-1108
ORF1ab/nsp2101I101TI281TnonsynaTcaCc3203180.993751106-1108
ORF1ab/nsp2101I101TI281TnonsynaTCaCT32020.006251106-1108
ORF1ab/nsp2101I101delI281deldelATC---767611106-1108
ORF1ab/nsp2101I101LI281LnonsynAtcCtc242411106-1108
ORF1ab/nsp2101I101SI281SnonsynaTcaGc171711106-1108
ORF1ab/nsp2101I101MI281MnonsynatCatG7711106-1108
ORF1ab/nsp2101I101NI281NnonsynaTcaAc640.6666671106-1108
ORF1ab/nsp2101I101NI281NnonsynaTCaAT620.3333331106-1108
ORF1ab/nsp2101I101FI281FnonsynAtcTtc4411106-1108
ORF1ab/nsp2101I101KI281KnonsynaTCaAA3311106-1108
ORF1ab/nsp2101I101YI281YnonsynATcTAc2211106-1108
ORF1ab/nsp2101I101XI281XnonsynATCTAA2211106-1108
ORF1ab/nsp2101I101del2I281del2delaTCa--210.51106-1108
ORF1ab/nsp2101I101del1I281del1delatCat-210.51106-1108
ORF1ab/nsp2101I101del1I281del1delATC-CT210.51106-1108
ORF1ab/nsp2101I101del2I281del2delATc--c210.51106-1108

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2101I101IatCatT13101332All0.000251
ORF1ab/nsp2101I101IatCatA221332All0.000004
ORF1ab/nsp2101I101VAtcGtc879891All0.000168
ORF1ab/nsp2101I101VAtCGtT12891All0.000002
ORF1ab/nsp2101I101VAtcGtc707719AY.40.0011
ORF1ab/nsp2101I101VAtCGtT12719AY.40.000019
ORF1ab/nsp2101I101IatCatT440440B.1.1.70.000394
ORF1ab/nsp2101I101TaTcaCc318320All0.000061
ORF1ab/nsp2101I101TaTCaCT2320All0
ORF1ab/nsp2101I101IatCatT108109AY.1030.000671
ORF1ab/nsp2101I101IatCatA1109AY.1030.000006
ORF1ab/nsp2101I101TaTcaCc9797B.1.1.70.000087
ORF1ab/nsp2101I101IatCatT7878U.11
ORF1ab/nsp2101I101delATC---7676All0.000015
ORF1ab/nsp2101I101IatCatT6162AY.40.000095
ORF1ab/nsp2101I101IatCatA162AY.40.000002
ORF1ab/nsp2101I101IatCatT4647B.1.617.20.000173
ORF1ab/nsp2101I101IatCatA147B.1.617.20.000004
ORF1ab/nsp2101I101VAtcGtc3636AY.260.001019
ORF1ab/nsp2101I101TaTcaCc3232AY.430.000142
ORF1ab/nsp2101I101IatCatT3131AY.60.001275
ORF1ab/nsp2101I101IatCatT3030AY.30.000298
ORF1ab/nsp2101I101IatCatT2828AY.98.10.001356
ORF1ab/nsp2101I101VAtcGtc2727B.1.617.20.000102
ORF1ab/nsp2101I101IatCatT2525AY.430.000111
ORF1ab/nsp2101I101IatCatT2525B.1.4970.007869
ORF1ab/nsp2101I101IatCatT2525B.1.5250.002829
ORF1ab/nsp2101I101LAtcCtc2424All0.000005
ORF1ab/nsp2101I101IatCatT1823B.10.000165
ORF1ab/nsp2101I101IatCatA523B.10.000046
ORF1ab/nsp2101I101IatCatT2222B.1.1770.00029
ORF1ab/nsp2101I101IatCatT2121B.1.4290.000494
ORF1ab/nsp2101I101IatCatT1818AY.4.20.00039
ORF1ab/nsp2101I101SaTcaGc1717All0.000003
ORF1ab/nsp2101I101IatCatT1717AY.250.000102
ORF1ab/nsp2101I101IatCatT1616AY.1020.000424
ORF1ab/nsp2101I101VAtcGtc1616B.10.000147
ORF1ab/nsp2101I101IatCatT1516B.1.10.000272
ORF1ab/nsp2101I101IatCatA116B.1.10.000018
ORF1ab/nsp2101I101TaTcaCc1515AY.4.20.000325
ORF1ab/nsp2101I101delATC---1515B.1.1.70.000013
ORF1ab/nsp2101I101IatCatT1515B.1.3690.004278
ORF1ab/nsp2101I101TaTcaCc1414B.1.617.20.000053
ORF1ab/nsp2101I101VAtcGtc1313AY.1020.000345
ORF1ab/nsp2101I101IatCatT1313B.1.5750.003944
ORF1ab/nsp2101I101IatCatT1112AY.440.000067
ORF1ab/nsp2101I101IatCatA112AY.440.000006
ORF1ab/nsp2101I101IatCatT1212AY.840.005249
ORF1ab/nsp2101I101TaTcaCc1212P.10.000189
ORF1ab/nsp2101I101TaTcaCc1111AY.250.000066
ORF1ab/nsp2101I101IatCatT1111B.1.1.10.003594
ORF1ab/nsp2101I101IatCatT1111B.1.20.000097
ORF1ab/nsp2101I101TaTcaCc1010B.1.1.3700.126582
ORF1ab/nsp2101I101VAtcGtc1010B.1.1.70.000009
ORF1ab/nsp2101I101TaTcaCc99AY.40.000014
ORF1ab/nsp2101I101IatCatT99P.10.000142
ORF1ab/nsp2101I101VAtcGtc88AY.230.000558
ORF1ab/nsp2101I101IatCatT58AY.50.000103
ORF1ab/nsp2101I101IatCatA38AY.50.000062
ORF1ab/nsp2101I101TaTcaCc88B.1.10.000145
ORF1ab/nsp2101I101MatCatG77All0.000001
ORF1ab/nsp2101I101IatCatT77AY.1200.00026
ORF1ab/nsp2101I101VAtcGtc77AY.200.000272
ORF1ab/nsp2101I101TaTcaCc77AY.330.000467
ORF1ab/nsp2101I101IatCatT77B.1.1.5190.000278
ORF1ab/nsp2101I101LAtcCtc77B.1.1.70.000006
ORF1ab/nsp2101I101TaTcaCc77B.1.1770.000092
ORF1ab/nsp2101I101IatCatT77B.1.5960.00061
ORF1ab/nsp2101I101NaTcaAc46All0.000001
ORF1ab/nsp2101I101NaTCaAT26All0
ORF1ab/nsp2101I101IatCatT66AY.1190.000212
ORF1ab/nsp2101I101TaTcaCc66AY.260.00017
ORF1ab/nsp2101I101VAtcGtc66AY.430.000027
ORF1ab/nsp2101I101VAtcGtc66B.1.10.000109
ORF1ab/nsp2101I101IatCatT66B.1.3750.004918
ORF1ab/nsp2101I101TaTcaCc55AY.1030.000031
ORF1ab/nsp2101I101delATC---55AY.250.00003
ORF1ab/nsp2101I101IatCatT55AY.330.000334
ORF1ab/nsp2101I101IatCatT55AY.390.000124
ORF1ab/nsp2101I101delATC---55AY.430.000022
ORF1ab/nsp2101I101TaTcaCc55AY.440.00003
ORF1ab/nsp2101I101delATC---55B.1.1.330.002104
ORF1ab/nsp2101I101IatCatT55B.1.177.70.000824
ORF1ab/nsp2101I101IatCatT55B.1.2340.00066
ORF1ab/nsp2101I101VAtcGtc55B.550.014749
ORF1ab/nsp2101I101NaTcaAc240.111111
ORF1ab/nsp2101I101NaTCaAT240.111111
ORF1ab/nsp2101I101FAtcTtc44All0.000001
ORF1ab/nsp2101I101TaTcaCc44AY.1020.000106
ORF1ab/nsp2101I101IatCatT44AY.290.000063
ORF1ab/nsp2101I101TaTcaCc44AY.30.00004
ORF1ab/nsp2101I101delATC---44AY.40.000006
ORF1ab/nsp2101I101IatCatT44AY.4.50.00043
ORF1ab/nsp2101I101TaTcaCc44AY.9.20.000147
ORF1ab/nsp2101I101IatCatT44AY.99.20.000369
ORF1ab/nsp2101I101delATC---44B.1.1.3480.003185
ORF1ab/nsp2101I101IatCatT34B.1.1600.000094
ORF1ab/nsp2101I101IatCatA14B.1.1600.000031
ORF1ab/nsp2101I101IatCatT44B.1.177.330.006579
ORF1ab/nsp2101I101IatCatA44B.1.258.110.001585
ORF1ab/nsp2101I101delATC---44B.1.617.20.000015
ORF1ab/nsp2101I101IatCatT44P.1.170.000647
ORF1ab/nsp2101I101KaTCaAA33All0.000001
ORF1ab/nsp2101I101VAtcGtc33AY.1030.000019
ORF1ab/nsp2101I101TaTcaCc33AY.1210.000406
ORF1ab/nsp2101I101IatCatT33AY.1210.000406
ORF1ab/nsp2101I101IatCatT33AY.340.000291
ORF1ab/nsp2101I101VAtcGtc33AY.390.000074
ORF1ab/nsp2101I101SaTcaGc33AY.40.000005
ORF1ab/nsp2101I101IatCatT33AY.600.002814
ORF1ab/nsp2101I101IatCatT33AY.750.000168
ORF1ab/nsp2101I101IatCatT33AY.9.20.00011
ORF1ab/nsp2101I101IatCatT33B.1.1.3970.006757
ORF1ab/nsp2101I101TaTcaCc33B.1.1.4160.002715
ORF1ab/nsp2101I101IatCatT33B.1.177.210.000229
ORF1ab/nsp2101I101TaTcaCc33B.1.177.440.001557
ORF1ab/nsp2101I101IatCatT33B.1.3510.000089
ORF1ab/nsp2101I101MatCatG33B.1.5250.000339
ORF1ab/nsp2101I101TaTcaCc33B.1.5260.000071
ORF1ab/nsp2101I101IatCatT33B.1.5260.000071
ORF1ab/nsp2101I101SaTcaGc33B.1.6350.052632
ORF1ab/nsp2101I101TaTcaCc33C.36.30.001702
ORF1ab/nsp2101I101IatCatT33C.370.000348
ORF1ab/nsp2101I101XATCTAA220.111111
ORF1ab/nsp2101I101YATcTAc220.111111
ORF1ab/nsp2101I101TaTCaCT220.111111
ORF1ab/nsp2101I101KaTCaAA220.111111
ORF1ab/nsp2101I101IatCatA220.111111
ORF1ab/nsp2101I101IatCatT22A.2.50.000998
ORF1ab/nsp2101I101XATCTAA22All0
ORF1ab/nsp2101I101YATcTAc22All0
ORF1ab/nsp2101I101del1atCat-12All0
ORF1ab/nsp2101I101del2aTCa--12All0
ORF1ab/nsp2101I101del2ATc--c12All0
ORF1ab/nsp2101I101del1ATC-CT12All0
ORF1ab/nsp2101I101IatCatT22AY.1000.000092
ORF1ab/nsp2101I101SaTcaGc22AY.1000.000092
ORF1ab/nsp2101I101LAtcCtc22AY.1020.000053
ORF1ab/nsp2101I101delATC---22AY.1030.000012
ORF1ab/nsp2101I101IatCatT22AY.1050.001286
ORF1ab/nsp2101I101IatCatT22AY.116.10.000623
ORF1ab/nsp2101I101TaTcaCc22AY.160.000759
ORF1ab/nsp2101I101IatCatT22AY.260.000057
ORF1ab/nsp2101I101TaTcaCc22AY.290.000032
ORF1ab/nsp2101I101TaTcaCc22AY.29.10.000441
ORF1ab/nsp2101I101VAtcGtc22AY.30.00002
ORF1ab/nsp2101I101IatCatT22AY.370.000632
ORF1ab/nsp2101I101TaTcaCc22AY.390.000049
ORF1ab/nsp2101I101delATC---22AY.4.50.000215
ORF1ab/nsp2101I101VAtcGtc22AY.440.000012
ORF1ab/nsp2101I101IatCatT22AY.470.000062
ORF1ab/nsp2101I101TaTcaCc22AY.790.002421
ORF1ab/nsp2101I101IatCatT22AY.980.000158
ORF1ab/nsp2101I101SaTcaGc22B.10.000018
ORF1ab/nsp2101I101TaTcaCc22B.10.000018
ORF1ab/nsp2101I101delATC---22B.1.10.000036
ORF1ab/nsp2101I101LAtcCtc22B.1.1.2220.000408
ORF1ab/nsp2101I101IatCatT22B.1.1.2840.000215
ORF1ab/nsp2101I101IatCatT22B.1.1.3690.000892
ORF1ab/nsp2101I101IatCatT22B.1.1.3720.001377
ORF1ab/nsp2101I101IatCatT22B.1.1.390.001019
ORF1ab/nsp2101I101VAtcGtc22B.1.1.4090.005666
ORF1ab/nsp2101I101VAtcGtc22B.1.1.4340.000697
ORF1ab/nsp2101I101NaTcaAc22B.1.1.70.000002
ORF1ab/nsp2101I101IatCatT22B.1.177.440.001038
ORF1ab/nsp2101I101TaTcaCc22B.1.177.80.001505
ORF1ab/nsp2101I101TaTcaCc22B.1.2580.000133
ORF1ab/nsp2101I101IatCatT22B.1.2580.000133
ORF1ab/nsp2101I101VAtcGtc22B.1.3230.041667
ORF1ab/nsp2101I101IatCatT22B.1.36.10.002281
ORF1ab/nsp2101I101LAtcCtc22B.1.36.290.001035
ORF1ab/nsp2101I101TaTcaCc22B.1.4090.001563
ORF1ab/nsp2101I101VAtcGtc22B.1.4270.000101
ORF1ab/nsp2101I101delATC---22B.1.4290.000047
ORF1ab/nsp2101I101TaTcaCc22B.1.438.10.000215
ORF1ab/nsp2101I101IatCatT22B.1.438.10.000215
ORF1ab/nsp2101I101IatCatT22B.1.5170.000854
ORF1ab/nsp2101I101IatCatT22B.1.5950.000522
ORF1ab/nsp2101I101LAtcCtc22B.1.617.20.000008
ORF1ab/nsp2101I101SaTcaGc22B.1.617.20.000008
ORF1ab/nsp2101I101TaTcaCc22B.1.6210.000177
ORF1ab/nsp2101I101IatCatT22D.20.00015
ORF1ab/nsp2101I101delATC---22N.60.014184
ORF1ab/nsp2101I101TaTcaCc22P.1.140.000096
ORF1ab/nsp2101I101IatCatT22P.1.150.000465
ORF1ab/nsp2101I101delATC---22P.20.000373
ORF1ab/nsp2101I101IatCatT22P.20.000373
ORF1ab/nsp2101I101LAtcCtc110.055556
ORF1ab/nsp2101I101IatCatT11A.2.5.30.010309
ORF1ab/nsp2101I101VAtcGtc11AP.10.001502
ORF1ab/nsp2101I101LAtcCtc11AY.1030.000006
ORF1ab/nsp2101I101VAtcGtc11AY.1100.000113
ORF1ab/nsp2101I101IatCatT11AY.1130.000142
ORF1ab/nsp2101I101TaTcaCc11AY.1160.000287
ORF1ab/nsp2101I101LAtcCtc11AY.1170.000085
ORF1ab/nsp2101I101TaTcaCc11AY.1190.000035
ORF1ab/nsp2101I101IatCatT11AY.120.000316
ORF1ab/nsp2101I101VAtcGtc11AY.140.000088
ORF1ab/nsp2101I101IatCatT11AY.160.00038
ORF1ab/nsp2101I101TaTcaCc11AY.16.10.00047
ORF1ab/nsp2101I101TaTcaCc11AY.200.000039
ORF1ab/nsp2101I101IatCatT11AY.230.00007
ORF1ab/nsp2101I101IatCatT11AY.240.000431
ORF1ab/nsp2101I101VAtcGtc11AY.250.000006
ORF1ab/nsp2101I101delATC---11AY.260.000028
ORF1ab/nsp2101I101VAtcGtc11AY.270.000065
ORF1ab/nsp2101I101LAtcCtc11AY.300.000396
ORF1ab/nsp2101I101VAtcGtc11AY.330.000067
ORF1ab/nsp2101I101LAtcCtc11AY.340.000097
ORF1ab/nsp2101I101IatCatT11AY.360.000148
ORF1ab/nsp2101I101IatCatT11AY.380.000499
ORF1ab/nsp2101I101MatCatG11AY.390.000025
ORF1ab/nsp2101I101FAtcTtc11AY.40.000002
ORF1ab/nsp2101I101VAtcGtc11AY.420.00004
ORF1ab/nsp2101I101TaTcaCc11AY.420.00004
ORF1ab/nsp2101I101KaTCaAA11AY.430.000004
ORF1ab/nsp2101I101del1ATC-CT11AY.440.000006
ORF1ab/nsp2101I101VAtcGtc11AY.450.000122
ORF1ab/nsp2101I101IatCatT11AY.450.000122
ORF1ab/nsp2101I101TaTcaCc11AY.46.40.000165
ORF1ab/nsp2101I101IatCatT11AY.46.40.000165
ORF1ab/nsp2101I101TaTcaCc11AY.470.000031
ORF1ab/nsp2101I101SaTcaGc11AY.470.000031
ORF1ab/nsp2101I101SaTcaGc11AY.50.000021
ORF1ab/nsp2101I101TaTcaCc11AY.5.40.000277
ORF1ab/nsp2101I101VAtcGtc11AY.540.000095
ORF1ab/nsp2101I101IatCatT11AY.550.000917
ORF1ab/nsp2101I101VAtcGtc11AY.550.000917
ORF1ab/nsp2101I101IatCatT11AY.610.000105
ORF1ab/nsp2101I101delATC---11AY.620.000436
ORF1ab/nsp2101I101delATC---11AY.670.000464
ORF1ab/nsp2101I101TaTcaCc11AY.690.000187
ORF1ab/nsp2101I101IatCatT11AY.690.000187
ORF1ab/nsp2101I101MatCatG11AY.70.000196
ORF1ab/nsp2101I101IatCatT11AY.700.000209
ORF1ab/nsp2101I101IatCatT11AY.710.000475
ORF1ab/nsp2101I101VAtcGtc11AY.730.000665
ORF1ab/nsp2101I101TaTcaCc11AY.750.000056
ORF1ab/nsp2101I101delATC---11AY.840.000437
ORF1ab/nsp2101I101VAtcGtc11AY.850.000427
ORF1ab/nsp2101I101TaTcaCc11AY.90.000068
ORF1ab/nsp2101I101IatCatT11AY.9.10.000084
ORF1ab/nsp2101I101VAtcGtc11AY.900.000684
ORF1ab/nsp2101I101IatCatT11AY.900.000684
ORF1ab/nsp2101I101IatCatT11AY.940.000443
ORF1ab/nsp2101I101VAtcGtc11AY.980.000079
ORF1ab/nsp2101I101delATC---11AY.990.001049
ORF1ab/nsp2101I101TaTcaCc11AY.99.10.001553
ORF1ab/nsp2101I101SaTcaGc11AY.99.20.000092
ORF1ab/nsp2101I101LAtcCtc11B.10.000009
ORF1ab/nsp2101I101FAtcTtc11B.1.10.000018
ORF1ab/nsp2101I101TaTcaCc11B.1.1.1410.002012
ORF1ab/nsp2101I101FAtcTtc11B.1.1.1890.001513
ORF1ab/nsp2101I101SaTcaGc11B.1.1.2140.000055
ORF1ab/nsp2101I101VAtcGtc11B.1.1.2140.000055
ORF1ab/nsp2101I101TaTcaCc11B.1.1.2140.000055
ORF1ab/nsp2101I101TaTcaCc11B.1.1.2430.004082
ORF1ab/nsp2101I101TaTcaCc11B.1.1.280.000311
ORF1ab/nsp2101I101IatCatT11B.1.1.280.000311
ORF1ab/nsp2101I101IatCatT11B.1.1.3050.003861
ORF1ab/nsp2101I101IatCatT11B.1.1.3110.000358
ORF1ab/nsp2101I101IatCatT11B.1.1.3170.000412
ORF1ab/nsp2101I101IatCatT11B.1.1.330.000421
ORF1ab/nsp2101I101IatCatT11B.1.1.3500.04
ORF1ab/nsp2101I101IatCatT11B.1.1.370.000193
ORF1ab/nsp2101I101TaTcaCc11B.1.1.4340.000349
ORF1ab/nsp2101I101IatCatT11B.1.1.500.000679
ORF1ab/nsp2101I101TaTcaCc11B.1.1.5230.001563
ORF1ab/nsp2101I101SaTcaGc11B.1.1.70.000001
ORF1ab/nsp2101I101MatCatG11B.1.1.70.000001
ORF1ab/nsp2101I101del2aTCa--11B.1.1.70.000001
ORF1ab/nsp2101I101delATC---11B.1.1.700.000341
ORF1ab/nsp2101I101TaTcaCc11B.1.1.700.000341
ORF1ab/nsp2101I101del1atCat-11B.1.1770.000013
ORF1ab/nsp2101I101VAtcGtc11B.1.1770.000013
ORF1ab/nsp2101I101delATC---11B.1.1770.000013
ORF1ab/nsp2101I101delATC---11B.1.177.150.000631
ORF1ab/nsp2101I101delATC---11B.1.177.210.000076
ORF1ab/nsp2101I101delATC---11B.1.177.540.000606
ORF1ab/nsp2101I101TaTcaCc11B.1.177.570.000281
ORF1ab/nsp2101I101delATC---11B.1.177.70.000165
ORF1ab/nsp2101I101TaTcaCc11B.1.177.730.000566
ORF1ab/nsp2101I101IatCatT11B.1.177.770.000726
ORF1ab/nsp2101I101IatCatT11B.1.177.800.001912
ORF1ab/nsp2101I101IatCatT11B.1.177.860.000183
ORF1ab/nsp2101I101delATC---11B.1.177.870.000728
ORF1ab/nsp2101I101delATC---11B.1.177.90.001332
ORF1ab/nsp2101I101TaTcaCc11B.1.20.000009
ORF1ab/nsp2101I101LAtcCtc11B.1.20.000009
ORF1ab/nsp2101I101delATC---11B.1.20.000009
ORF1ab/nsp2101I101IatCatT11B.1.2210.000071
ORF1ab/nsp2101I101delATC---11B.1.230.006061
ORF1ab/nsp2101I101TaTcaCc11B.1.2400.000216
ORF1ab/nsp2101I101TaTcaCc11B.1.2430.00007
ORF1ab/nsp2101I101IatCatT11B.1.2430.00007
ORF1ab/nsp2101I101TaTcaCc11B.1.258.170.000104
ORF1ab/nsp2101I101delATC---11B.1.258.30.001675
ORF1ab/nsp2101I101IatCatT11B.1.2800.007143
ORF1ab/nsp2101I101IatCatT11B.1.3260.007576
ORF1ab/nsp2101I101IatCatT11B.1.3490.000715
ORF1ab/nsp2101I101LAtcCtc11B.1.3510.00003
ORF1ab/nsp2101I101TaTcaCc11B.1.351.30.000876
ORF1ab/nsp2101I101IatCatT11B.1.36.170.000494
ORF1ab/nsp2101I101IatCatT11B.1.36.180.00042
ORF1ab/nsp2101I101IatCatT11B.1.36.240.006173
ORF1ab/nsp2101I101TaTcaCc11B.1.36.80.001
ORF1ab/nsp2101I101VAtcGtc11B.1.36.80.001
ORF1ab/nsp2101I101VAtcGtc11B.1.4010.008197
ORF1ab/nsp2101I101TaTcaCc11B.1.4740.001901
ORF1ab/nsp2101I101IatCatT11B.1.5270.003704
ORF1ab/nsp2101I101LAtcCtc11B.1.5460.003704
ORF1ab/nsp2101I101delATC---11B.1.5960.000087
ORF1ab/nsp2101I101IatCatA11B.1.6090.000479
ORF1ab/nsp2101I101del2ATc--c11B.1.617.20.000004
ORF1ab/nsp2101I101delATC---11B.1.6210.000089
ORF1ab/nsp2101I101IatCatT11B.1.6370.000073
ORF1ab/nsp2101I101IatCatT11B.1.780.008547
ORF1ab/nsp2101I101IatCatT11B.3.10.001658
ORF1ab/nsp2101I101delATC---11B.340.013699
ORF1ab/nsp2101I101FAtcTtc11B.40.002208
ORF1ab/nsp2101I101MatCatG11B.60.00091
ORF1ab/nsp2101I101IatCatA11B.6.60.000889
ORF1ab/nsp2101I101IatCatT11C.180.002591
ORF1ab/nsp2101I101IatCatT11C.360.000911
ORF1ab/nsp2101I101IatCatT11C.36.30.000567
ORF1ab/nsp2101I101IatCatT11C.400.027778
ORF1ab/nsp2101I101IatCatT11L.30.003546
ORF1ab/nsp2101I101delATC---11N.40.004255
ORF1ab/nsp2101I101VAtcGtc11P.10.000016
ORF1ab/nsp2101I101IatCatT11P.1.10.000318
ORF1ab/nsp2101I101TaTcaCc11P.1.120.000484
ORF1ab/nsp2101I101IatCatT11P.1.120.000484
ORF1ab/nsp2101I101VAtcGtc11P.1.140.000048
ORF1ab/nsp2101I101IatCatT11P.1.140.000048
ORF1ab/nsp2101I101delATC---11Q.10.000126
ORF1ab/nsp2101I101delATC---11Q.20.000613
ORF1ab/nsp2101I101IatCatT11Q.80.000165
ORF1ab/nsp2101I101IatCatT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.