CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 47 | Y47Y | Y6845Y | syn | taT | taC | 2190 | 2190 | 1 | 20797-20799 |
Details of the mutation Y47Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2190 | 2190 | All | 0.000419 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 573 | 573 | B.1.258.3 | 0.959799 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 518 | 518 | B.1.258 | 0.034471 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 222 | 222 | B.1.258.2 | 1 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 110 | 110 | B.1.2 | 0.000969 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 94 | 94 | B.1.617.2 | 0.000354 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 73 | 73 | AY.98 | 0.005767 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 60 | 60 | B.1.1.7 | 0.000054 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 37 | 37 | B.1.258.24 | 0.397849 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 35 | 35 | AY.4 | 0.000054 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 33 | 33 | AY.44 | 0.000201 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 29 | 29 | B.1.1.384 | 0.690476 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 24 | 24 | AY.46.6 | 0.001733 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 24 | 24 | G.1 | 1 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 23 | 23 | AY.36 | 0.003409 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 14 | 14 | B.1.1 | 0.000254 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 12 | 12 | B.1.177.21 | 0.000918 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 7 | 7 | AY.108 | 0.007718 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 7 | 7 | AY.99.2 | 0.000645 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 6 | 6 | B.1.1.420 | 0.006036 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 4 | 4 | B.1.1.174 | 0.013514 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | B.1.1.83 | 0.00813 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | B.1.470 | 0.004213 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | B.1.478 | 0.023529 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AA.2 | 0.007692 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.39 | 0.003906 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp16 | 47 | Y47Y | taT | taC | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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