CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = T93T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1693T93TT6891TsynacGacT34981343740.98264820935-20937
ORF1ab/nsp1693T93TT6891TsynacGacA349815830.016666220935-20937
ORF1ab/nsp1693T93TT6891TsynacGacC34981240.00068608720935-20937

Details of the mutation T93T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1693T93TacGacT3437434981All0.006574
ORF1ab/nsp1693T93TacGacA58334981All0.000112
ORF1ab/nsp1693T93TacGacC2434981All0.000005
ORF1ab/nsp1693T93TacGacT1653616573B.1.617.20.062265
ORF1ab/nsp1693T93TacGacA3616573B.1.617.20.000136
ORF1ab/nsp1693T93TacGacC116573B.1.617.20.000004
ORF1ab/nsp1693T93TacGacT1032410329AY.430.04574
ORF1ab/nsp1693T93TacGacA410329AY.430.000018
ORF1ab/nsp1693T93TacGacC110329AY.430.000004
ORF1ab/nsp1693T93TacGacT31113111AY.120.983249
ORF1ab/nsp1693T93TacGacT833844AY.440.00507
ORF1ab/nsp1693T93TacGacA11844AY.440.000067
ORF1ab/nsp1693T93TacGacT603604AY.390.014901
ORF1ab/nsp1693T93TacGacA1604AY.390.000025
ORF1ab/nsp1693T93TacGacT375377AY.460.03903
ORF1ab/nsp1693T93TacGacA2377AY.460.000208
ORF1ab/nsp1693T93TacGacT347358AY.1020.0092
ORF1ab/nsp1693T93TacGacA11358AY.1020.000292
ORF1ab/nsp1693T93TacGacT215259B.1.1.70.000192
ORF1ab/nsp1693T93TacGacA43259B.1.1.70.000038
ORF1ab/nsp1693T93TacGacC1259B.1.1.70.000001
ORF1ab/nsp1693T93TacGacT179180AY.5.40.04953
ORF1ab/nsp1693T93TacGacA1180AY.5.40.000277
ORF1ab/nsp1693T93TacGacA129157AY.330.008614
ORF1ab/nsp1693T93TacGacT28157AY.330.00187
ORF1ab/nsp1693T93TacGacT110129AY.1030.000683
ORF1ab/nsp1693T93TacGacA19129AY.1030.000118
ORF1ab/nsp1693T93TacGacT123123AY.34.10.062723
ORF1ab/nsp1693T93TacGacT112112AY.450.013629
ORF1ab/nsp1693T93TacGacT9899AY.1170.008283
ORF1ab/nsp1693T93TacGacA199AY.1170.000085
ORF1ab/nsp1693T93TacGacA7987AY.680.021626
ORF1ab/nsp1693T93TacGacT887AY.680.00219
ORF1ab/nsp1693T93TacGacT8585AY.840.037183
ORF1ab/nsp1693T93TacGacA6670B.1.20.000581
ORF1ab/nsp1693T93TacGacT470B.1.20.000035
ORF1ab/nsp1693T93TacGacT6566AY.1190.002295
ORF1ab/nsp1693T93TacGacA166AY.1190.000035
ORF1ab/nsp1693T93TacGacT5151AY.880.045093
ORF1ab/nsp1693T93TacGacT4250AY.250.000253
ORF1ab/nsp1693T93TacGacA850AY.250.000048
ORF1ab/nsp1693T93TacGacT4646AY.990.048269
ORF1ab/nsp1693T93TacGacT2645AY.40.00004
ORF1ab/nsp1693T93TacGacA1945AY.40.00003
ORF1ab/nsp1693T93TacGacT4444AY.580.039927
ORF1ab/nsp1693T93TacGacT3941AY.5.30.013158
ORF1ab/nsp1693T93TacGacA241AY.5.30.000675
ORF1ab/nsp1693T93TacGacT4040AY.230.00279
ORF1ab/nsp1693T93TacGacT3939AY.320.020767
ORF1ab/nsp1693T93TacGacT3535AY.1050.022508
ORF1ab/nsp1693T93TacGacT3435AY.50.000702
ORF1ab/nsp1693T93TacGacA135AY.50.000021
ORF1ab/nsp1693T93TacGacT3131AY.1110.005678
ORF1ab/nsp1693T93TacGacT2731B.10.000247
ORF1ab/nsp1693T93TacGacA331B.10.000027
ORF1ab/nsp1693T93TacGacC131B.10.000009
ORF1ab/nsp1693T93TacGacT2929AY.190.033067
ORF1ab/nsp1693T93TacGacT2929AY.46.60.002094
ORF1ab/nsp1693T93TacGacT2829AY.980.002212
ORF1ab/nsp1693T93TacGacA129AY.980.000079
ORF1ab/nsp1693T93TacGacT2929Q.10.003663
ORF1ab/nsp1693T93TacGacT2828AY.1080.030871
ORF1ab/nsp1693T93TacGacT2626AY.920.007469
ORF1ab/nsp1693T93TacGacT2525AY.560.040128
ORF1ab/nsp1693T93TacGacT2424AY.890.117647
ORF1ab/nsp1693T93TacGacT2222AY.420.000885
ORF1ab/nsp1693T93TacGacT2122AY.46.20.013342
ORF1ab/nsp1693T93TacGacA122AY.46.20.000635
ORF1ab/nsp1693T93TacGacA1919A.2.50.009481
ORF1ab/nsp1693T93TacGacT1717AY.1210.0023
ORF1ab/nsp1693T93TacGacT1717AY.140.001496
ORF1ab/nsp1693T93TacGacT1317AY.200.000505
ORF1ab/nsp1693T93TacGacA417AY.200.000155
ORF1ab/nsp1693T93TacGacT1617AY.470.000498
ORF1ab/nsp1693T93TacGacA117AY.470.000031
ORF1ab/nsp1693T93TacGacT1717AY.98.10.000823
ORF1ab/nsp1693T93TacGacT1317P.10.000205
ORF1ab/nsp1693T93TacGacA317P.10.000047
ORF1ab/nsp1693T93TacGacC117P.10.000016
ORF1ab/nsp1693T93TacGacT1515B.1.1.3710.15625
ORF1ab/nsp1693T93TacGacT1515B.400.005464
ORF1ab/nsp1693T93TacGacT1414AY.530.004025
ORF1ab/nsp1693T93TacGacA1114B.1.10.0002
ORF1ab/nsp1693T93TacGacT314B.1.10.000054
ORF1ab/nsp1693T93TacGacA1314B.1.5260.000306
ORF1ab/nsp1693T93TacGacT114B.1.5260.000024
ORF1ab/nsp1693T93TacGacT1213AY.1180.000752
ORF1ab/nsp1693T93TacGacA113AY.1180.000063
ORF1ab/nsp1693T93TacGacT1313AY.640.007738
ORF1ab/nsp1693T93TacGacT1013AY.740.001156
ORF1ab/nsp1693T93TacGacA313AY.740.000347
ORF1ab/nsp1693T93TacGacT1313AY.780.020031
ORF1ab/nsp1693T93TacGacT1212AY.1060.004019
ORF1ab/nsp1693T93TacGacT1212AY.1130.001709
ORF1ab/nsp1693T93TacGacA912AY.30.00009
ORF1ab/nsp1693T93TacGacT312AY.30.00003
ORF1ab/nsp1693T93TacGacT1111AY.110.014726
ORF1ab/nsp1693T93TacGacA911AY.4.20.000195
ORF1ab/nsp1693T93TacGacT211AY.4.20.000043
ORF1ab/nsp1693T93TacGacT1010AY.4.30.008418
ORF1ab/nsp1693T93TacGacT99AY.100.004769
ORF1ab/nsp1693T93TacGacT59AY.1160.001434
ORF1ab/nsp1693T93TacGacA49AY.1160.001147
ORF1ab/nsp1693T93TacGacT89B.1.1600.00025
ORF1ab/nsp1693T93TacGacC19B.1.1600.000031
ORF1ab/nsp1693T93TacGacT59B.1.2580.000333
ORF1ab/nsp1693T93TacGacA49B.1.2580.000266
ORF1ab/nsp1693T93TacGacT88AY.46.10.008214
ORF1ab/nsp1693T93TacGacT78AY.950.005327
ORF1ab/nsp1693T93TacGacA18AY.950.000761
ORF1ab/nsp1693T93TacGacA88B.1.1.5190.000318
ORF1ab/nsp1693T93TacGacT88B.1.36.10.009122
ORF1ab/nsp1693T93TacGacT88P.20.001493
ORF1ab/nsp1693T93TacGacT57AY.1000.00023
ORF1ab/nsp1693T93TacGacA27AY.1000.000092
ORF1ab/nsp1693T93TacGacT77AY.1100.000789
ORF1ab/nsp1693T93TacGacT67AY.1140.001387
ORF1ab/nsp1693T93TacGacA17AY.1140.000231
ORF1ab/nsp1693T93TacGacT77AY.1200.00026
ORF1ab/nsp1693T93TacGacA77AY.20.002493
ORF1ab/nsp1693T93TacGacT77AY.590.003708
ORF1ab/nsp1693T93TacGacT77AY.670.00325
ORF1ab/nsp1693T93TacGacT77AY.820.009498
ORF1ab/nsp1693T93TacGacC77B.1.1.250.00398
ORF1ab/nsp1693T93TacGacT77B.1.1.330.002946
ORF1ab/nsp1693T93TacGacT66AY.770.006764
ORF1ab/nsp1693T93TacGacT66AY.870.004996
ORF1ab/nsp1693T93TacGacT66AY.99.10.009317
ORF1ab/nsp1693T93TacGacA56B.1.2340.00066
ORF1ab/nsp1693T93TacGacT16B.1.2340.000132
ORF1ab/nsp1693T93TacGacA56B.1.4290.000118
ORF1ab/nsp1693T93TacGacT16B.1.4290.000024
ORF1ab/nsp1693T93TacGacT45AY.39.10.000158
ORF1ab/nsp1693T93TacGacA15AY.39.10.00004
ORF1ab/nsp1693T93TacGacT45AY.4.40.001637
ORF1ab/nsp1693T93TacGacA15AY.4.40.000409
ORF1ab/nsp1693T93TacGacT55AY.90.000338
ORF1ab/nsp1693T93TacGacT45AY.9.20.000147
ORF1ab/nsp1693T93TacGacA15AY.9.20.000037
ORF1ab/nsp1693T93TacGacT55AY.960.010373
ORF1ab/nsp1693T93TacGacT45B0.000511
ORF1ab/nsp1693T93TacGacC15B0.000128
ORF1ab/nsp1693T93TacGacT55B.1.1.2140.000277
ORF1ab/nsp1693T93TacGacT55B.1.1.3740.011876
ORF1ab/nsp1693T93TacGacT44AY.520.003257
ORF1ab/nsp1693T93TacGacT44AY.80.002424
ORF1ab/nsp1693T93TacGacA34B.1.1770.00004
ORF1ab/nsp1693T93TacGacT14B.1.1770.000013
ORF1ab/nsp1693T93TacGacC34B.1.351.30.002629
ORF1ab/nsp1693T93TacGacT14B.1.351.30.000876
ORF1ab/nsp1693T93TacGacT24B.1.617.10.000258
ORF1ab/nsp1693T93TacGacA24B.1.617.10.000258
ORF1ab/nsp1693T93TacGacC34C.370.000348
ORF1ab/nsp1693T93TacGacT14C.370.000116
ORF1ab/nsp1693T93TacGacA33AY.1070.001398
ORF1ab/nsp1693T93TacGacT33AY.340.000291
ORF1ab/nsp1693T93TacGacT33AY.4.2.10.000447
ORF1ab/nsp1693T93TacGacT33AY.570.001969
ORF1ab/nsp1693T93TacGacT33AY.60.000123
ORF1ab/nsp1693T93TacGacT33AY.600.002814
ORF1ab/nsp1693T93TacGacT33AY.900.002053
ORF1ab/nsp1693T93TacGacT23AY.99.20.000184
ORF1ab/nsp1693T93TacGacA13AY.99.20.000092
ORF1ab/nsp1693T93TacGacT33B.1.1.1780.125
ORF1ab/nsp1693T93TacGacT33P.1.140.000143
ORF1ab/nsp1693T93TacGacT22AY.1010.000981
ORF1ab/nsp1693T93TacGacA22AY.3.10.000171
ORF1ab/nsp1693T93TacGacT22AY.39.1.10.001449
ORF1ab/nsp1693T93TacGacT22AY.400.001929
ORF1ab/nsp1693T93TacGacT22AY.410.000588
ORF1ab/nsp1693T93TacGacT22AY.46.50.000397
ORF1ab/nsp1693T93TacGacT22AY.480.00093
ORF1ab/nsp1693T93TacGacT22AY.500.001599
ORF1ab/nsp1693T93TacGacT22AY.610.00021
ORF1ab/nsp1693T93TacGacT22AY.620.000871
ORF1ab/nsp1693T93TacGacT22AY.700.000417
ORF1ab/nsp1693T93TacGacT22AY.750.000112
ORF1ab/nsp1693T93TacGacA22B.1.1.3260.003521
ORF1ab/nsp1693T93TacGacA12B.1.3510.00003
ORF1ab/nsp1693T93TacGacC12B.1.3510.00003
ORF1ab/nsp1693T93TacGacT22B.1.36.290.001035
ORF1ab/nsp1693T93TacGacT22B.1.4690.00722
ORF1ab/nsp1693T93TacGacA12B.1.6210.000089
ORF1ab/nsp1693T93TacGacC12B.1.6210.000089
ORF1ab/nsp1693T93TacGacT12R.10.00009
ORF1ab/nsp1693T93TacGacA12R.10.00009
ORF1ab/nsp1693T93TacGacA110.055556
ORF1ab/nsp1693T93TacGacA11A.2.40.003367
ORF1ab/nsp1693T93TacGacA11A.2.5.30.010309
ORF1ab/nsp1693T93TacGacT11AY.10.000396
ORF1ab/nsp1693T93TacGacT11AY.120.10.000321
ORF1ab/nsp1693T93TacGacT11AY.130.000161
ORF1ab/nsp1693T93TacGacT11AY.160.00038
ORF1ab/nsp1693T93TacGacT11AY.210.001898
ORF1ab/nsp1693T93TacGacT11AY.240.000431
ORF1ab/nsp1693T93TacGacT11AY.260.000028
ORF1ab/nsp1693T93TacGacA11AY.270.000065
ORF1ab/nsp1693T93TacGacT11AY.360.000148
ORF1ab/nsp1693T93TacGacT11AY.490.003195
ORF1ab/nsp1693T93TacGacT11AY.540.000095
ORF1ab/nsp1693T93TacGacT11AY.70.000196
ORF1ab/nsp1693T93TacGacT11AY.7.20.000559
ORF1ab/nsp1693T93TacGacA11AY.710.000475
ORF1ab/nsp1693T93TacGacT11AY.75.10.00018
ORF1ab/nsp1693T93TacGacT11AY.850.000427
ORF1ab/nsp1693T93TacGacT11AY.860.00083
ORF1ab/nsp1693T93TacGacT11AY.910.00073
ORF1ab/nsp1693T93TacGacT11AY.930.000273
ORF1ab/nsp1693T93TacGacT11AY.970.001701
ORF1ab/nsp1693T93TacGacT11B.1.1.1920.002309
ORF1ab/nsp1693T93TacGacT11B.1.1.2100.005714
ORF1ab/nsp1693T93TacGacA11B.1.1.2790.001121
ORF1ab/nsp1693T93TacGacT11B.1.1.280.000311
ORF1ab/nsp1693T93TacGacA11B.1.1.3180.000302
ORF1ab/nsp1693T93TacGacA11B.1.1280.000635
ORF1ab/nsp1693T93TacGacT11B.1.160.230.004831
ORF1ab/nsp1693T93TacGacT11B.1.177.210.000076
ORF1ab/nsp1693T93TacGacA11B.1.177.820.000477
ORF1ab/nsp1693T93TacGacT11B.1.258.210.007752
ORF1ab/nsp1693T93TacGacA11B.1.351.20.000303
ORF1ab/nsp1693T93TacGacT11B.1.360.000146
ORF1ab/nsp1693T93TacGacT11B.1.3610.001289
ORF1ab/nsp1693T93TacGacC11B.1.5250.000113
ORF1ab/nsp1693T93TacGacT11B.1.5410.004425
ORF1ab/nsp1693T93TacGacA11B.1.5440.006024
ORF1ab/nsp1693T93TacGacT11B.1.5800.004065
ORF1ab/nsp1693T93TacGacT11B.1.6370.000073
ORF1ab/nsp1693T93TacGacA11B.1.940.027027
ORF1ab/nsp1693T93TacGacT11C.36.30.000567
ORF1ab/nsp1693T93TacGacC11D.20.000075
ORF1ab/nsp1693T93TacGacT11N.40.004255
ORF1ab/nsp1693T93TacGacA11P.1.120.000484
ORF1ab/nsp1693T93TacGacA11Q.60.006623
ORF1ab/nsp1693T93TacGacA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.