CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp16 | 93 | T93M | T6891M | nonsyn | aCg | aTg | 1367 | 1367 | 1 | 20935-20937 |
Details of the mutation T93M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1367 | 1367 | All | 0.000261 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 340 | 340 | B.1.617.1 | 0.043848 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 123 | 123 | B.1.1.7 | 0.00011 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 120 | 120 | AY.4 | 0.000187 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 114 | 114 | B.1.1.265 | 0.359621 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 51 | 51 | B.1 | 0.000467 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 43 | 43 | B.1.351 | 0.001278 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 32 | 32 | B.1.1.519 | 0.001271 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 31 | 31 | AY.42 | 0.001247 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 29 | 29 | B.1.565 | 0.023501 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 28 | 28 | P.2 | 0.005226 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 23 | 23 | AY.4.2 | 0.000499 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 21 | 21 | B.1.1 | 0.000381 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 20 | 20 | B.1.429 | 0.000471 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | AY.43 | 0.000071 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | AY.8 | 0.009697 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | B.1.1.337 | 0.057554 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 14 | 14 | B.1.1.207 | 0.016548 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 9 | 9 | AY.25 | 0.000054 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 8 | 8 | B.1.409 | 0.00625 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 7 | 7 | B.1.561 | 0.002779 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | AY.66 | 0.005348 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.224 | 0.028571 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.1.357 | 0.25 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.214 | 0.007326 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.36.36 | 0.001204 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | 0.055556 | |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.516 | 0.066667 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.243.1 | 0.022222 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.306 | 0.005714 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp16 | 93 | T93M | aCg | aTg | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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