CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = T91T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp1691T91TT6889TsynacGacT462233520.72522720929-20931
ORF1ab/nsp1691T91TT6889TsynacGacA462212600.27260920929-20931
ORF1ab/nsp1691T91TT6889TsynacGacC4622100.0021635720929-20931

Details of the mutation T91T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp1691T91TacGacT33524622All0.000641
ORF1ab/nsp1691T91TacGacA12604622All0.000241
ORF1ab/nsp1691T91TacGacC104622All0.000002
ORF1ab/nsp1691T91TacGacT744745B.1.4270.03757
ORF1ab/nsp1691T91TacGacA1745B.1.4270.00005
ORF1ab/nsp1691T91TacGacA631656P.10.009941
ORF1ab/nsp1691T91TacGacT25656P.10.000394
ORF1ab/nsp1691T91TacGacT231444B.1.1.70.000207
ORF1ab/nsp1691T91TacGacA213444B.1.1.70.000191
ORF1ab/nsp1691T91TacGacT442442C.350.342105
ORF1ab/nsp1691T91TacGacT224253AY.40.000349
ORF1ab/nsp1691T91TacGacA28253AY.40.000044
ORF1ab/nsp1691T91TacGacC1253AY.40.000002
ORF1ab/nsp1691T91TacGacT199199B.1.177.540.120679
ORF1ab/nsp1691T91TacGacT123132B.1.617.20.000463
ORF1ab/nsp1691T91TacGacA8132B.1.617.20.00003
ORF1ab/nsp1691T91TacGacC1132B.1.617.20.000004
ORF1ab/nsp1691T91TacGacT109122B.10.000998
ORF1ab/nsp1691T91TacGacA13122B.10.000119
ORF1ab/nsp1691T91TacGacT98103AY.30.000975
ORF1ab/nsp1691T91TacGacA5103AY.30.00005
ORF1ab/nsp1691T91TacGacT6888B.1.3510.002021
ORF1ab/nsp1691T91TacGacA2088B.1.3510.000595
ORF1ab/nsp1691T91TacGacT7272AY.870.05995
ORF1ab/nsp1691T91TacGacT6071AY.430.000266
ORF1ab/nsp1691T91TacGacA1171AY.430.000049
ORF1ab/nsp1691T91TacGacT7171B.1.5250.008034
ORF1ab/nsp1691T91TacGacT5151P.1.150.011849
ORF1ab/nsp1691T91TacGacT4949B.1.6200.046358
ORF1ab/nsp1691T91TacGacT3447B.1.20.000299
ORF1ab/nsp1691T91TacGacA1347B.1.20.000114
ORF1ab/nsp1691T91TacGacT4143AY.1020.001087
ORF1ab/nsp1691T91TacGacA243AY.1020.000053
ORF1ab/nsp1691T91TacGacA2040AY.440.000122
ORF1ab/nsp1691T91TacGacT1740AY.440.000103
ORF1ab/nsp1691T91TacGacC340AY.440.000018
ORF1ab/nsp1691T91TacGacT3738B.1.10.000671
ORF1ab/nsp1691T91TacGacC138B.1.10.000018
ORF1ab/nsp1691T91TacGacA3838B.1.1731
ORF1ab/nsp1691T91TacGacT3335B.1.4290.000776
ORF1ab/nsp1691T91TacGacA235B.1.4290.000047
ORF1ab/nsp1691T91TacGacT2234AY.1030.000137
ORF1ab/nsp1691T91TacGacA1234AY.1030.000075
ORF1ab/nsp1691T91TacGacA2034AY.250.00012
ORF1ab/nsp1691T91TacGacT1434AY.250.000084
ORF1ab/nsp1691T91TacGacT3033AY.390.000741
ORF1ab/nsp1691T91TacGacA333AY.390.000074
ORF1ab/nsp1691T91TacGacT2829AY.9.20.001028
ORF1ab/nsp1691T91TacGacA129AY.9.20.000037
ORF1ab/nsp1691T91TacGacT2929B.1.36.160.041311
ORF1ab/nsp1691T91TacGacT2627B.1.1600.000811
ORF1ab/nsp1691T91TacGacA127B.1.1600.000031
ORF1ab/nsp1691T91TacGacA2425B.1.1.4320.03038
ORF1ab/nsp1691T91TacGacT125B.1.1.4320.001266
ORF1ab/nsp1691T91TacGacA1720B.1.5960.001481
ORF1ab/nsp1691T91TacGacT320B.1.5960.000261
ORF1ab/nsp1691T91TacGacT1717B.1.1.3411
ORF1ab/nsp1691T91TacGacA1017B.1.6210.000885
ORF1ab/nsp1691T91TacGacT717B.1.6210.00062
ORF1ab/nsp1691T91TacGacT1516AY.330.001002
ORF1ab/nsp1691T91TacGacA116AY.330.000067
ORF1ab/nsp1691T91TacGacT1616AY.780.024653
ORF1ab/nsp1691T91TacGacT1616AY.98.10.000775
ORF1ab/nsp1691T91TacGacA1116B.1.1770.000145
ORF1ab/nsp1691T91TacGacT516B.1.1770.000066
ORF1ab/nsp1691T91TacGacT1516B.1.438.10.001609
ORF1ab/nsp1691T91TacGacA116B.1.438.10.000107
ORF1ab/nsp1691T91TacGacT1515AY.1190.00053
ORF1ab/nsp1691T91TacGacT1414B.1.3990.027079
ORF1ab/nsp1691T91TacGacT1213AY.260.00034
ORF1ab/nsp1691T91TacGacA113AY.260.000028
ORF1ab/nsp1691T91TacGacT813AY.50.000165
ORF1ab/nsp1691T91TacGacA513AY.50.000103
ORF1ab/nsp1691T91TacGacA1313B.1.36.350.033854
ORF1ab/nsp1691T91TacGacA1012AY.750.00056
ORF1ab/nsp1691T91TacGacT212AY.750.000112
ORF1ab/nsp1691T91TacGacA612B.1.1.5190.000238
ORF1ab/nsp1691T91TacGacT612B.1.1.5190.000238
ORF1ab/nsp1691T91TacGacA1012B.1.2210.00071
ORF1ab/nsp1691T91TacGacT212B.1.2210.000142
ORF1ab/nsp1691T91TacGacT1212B.1.5170.005124
ORF1ab/nsp1691T91TacGacT1111B.1.177.870.008006
ORF1ab/nsp1691T91TacGacT1111B.1.2580.000732
ORF1ab/nsp1691T91TacGacT810AY.230.000558
ORF1ab/nsp1691T91TacGacA210AY.230.000139
ORF1ab/nsp1691T91TacGacA1010AY.590.005297
ORF1ab/nsp1691T91TacGacA1010AY.990.010493
ORF1ab/nsp1691T91TacGacT610C.370.000696
ORF1ab/nsp1691T91TacGacA410C.370.000464
ORF1ab/nsp1691T91TacGacT99AY.1210.001218
ORF1ab/nsp1691T91TacGacT89B.1.5260.000188
ORF1ab/nsp1691T91TacGacA19B.1.5260.000024
ORF1ab/nsp1691T91TacGacT79B.1.617.10.000903
ORF1ab/nsp1691T91TacGacA29B.1.617.10.000258
ORF1ab/nsp1691T91TacGacA89P.1.10.002541
ORF1ab/nsp1691T91TacGacT19P.1.10.000318
ORF1ab/nsp1691T91TacGacA99P.1.120.004356
ORF1ab/nsp1691T91TacGacA78AY.90.000473
ORF1ab/nsp1691T91TacGacT18AY.90.000068
ORF1ab/nsp1691T91TacGacT88B.1.177.600.001747
ORF1ab/nsp1691T91TacGacT58P.1.140.000239
ORF1ab/nsp1691T91TacGacA38P.1.140.000143
ORF1ab/nsp1691T91TacGacT77B.1.1.1700.008728
ORF1ab/nsp1691T91TacGacT77B.1.1.2840.000752
ORF1ab/nsp1691T91TacGacA36AY.200.000117
ORF1ab/nsp1691T91TacGacT36AY.200.000117
ORF1ab/nsp1691T91TacGacT46AY.290.000063
ORF1ab/nsp1691T91TacGacA26AY.290.000032
ORF1ab/nsp1691T91TacGacT56AY.39.10.000198
ORF1ab/nsp1691T91TacGacA16AY.39.10.00004
ORF1ab/nsp1691T91TacGacT66B.1.360.000875
ORF1ab/nsp1691T91TacGacT55AY.46.60.000361
ORF1ab/nsp1691T91TacGacT55AY.820.006784
ORF1ab/nsp1691T91TacGacT55AZ.20.004105
ORF1ab/nsp1691T91TacGacT55B.1.1.280.001556
ORF1ab/nsp1691T91TacGacT55B.1.3490.003574
ORF1ab/nsp1691T91TacGacT45P.1.160.001496
ORF1ab/nsp1691T91TacGacA15P.1.160.000374
ORF1ab/nsp1691T91TacGacT44A.23.10.002817
ORF1ab/nsp1691T91TacGacT24AY.1130.000285
ORF1ab/nsp1691T91TacGacA24AY.1130.000285
ORF1ab/nsp1691T91TacGacT44AY.1170.000338
ORF1ab/nsp1691T91TacGacT44AY.1200.000149
ORF1ab/nsp1691T91TacGacT24AY.340.000194
ORF1ab/nsp1691T91TacGacA24AY.340.000194
ORF1ab/nsp1691T91TacGacA24AY.450.000243
ORF1ab/nsp1691T91TacGacT24AY.450.000243
ORF1ab/nsp1691T91TacGacT24AY.610.00021
ORF1ab/nsp1691T91TacGacA24AY.610.00021
ORF1ab/nsp1691T91TacGacT44AY.920.001149
ORF1ab/nsp1691T91TacGacT44AY.99.20.000369
ORF1ab/nsp1691T91TacGacT44B0.000511
ORF1ab/nsp1691T91TacGacT44B.1.1.2220.000816
ORF1ab/nsp1691T91TacGacT44B.1.36.290.002069
ORF1ab/nsp1691T91TacGacT33AY.1000.000138
ORF1ab/nsp1691T91TacGacT33AY.110.004016
ORF1ab/nsp1691T91TacGacT33AY.130.000483
ORF1ab/nsp1691T91TacGacT23AY.420.00008
ORF1ab/nsp1691T91TacGacA13AY.420.00004
ORF1ab/nsp1691T91TacGacT23AY.60.000082
ORF1ab/nsp1691T91TacGacA13AY.60.000041
ORF1ab/nsp1691T91TacGacT33AY.850.001282
ORF1ab/nsp1691T91TacGacT33B.1.1.3170.001235
ORF1ab/nsp1691T91TacGacA33B.1.1.4340.001046
ORF1ab/nsp1691T91TacGacA33B.1.1280.001906
ORF1ab/nsp1691T91TacGacT33B.1.4060.018182
ORF1ab/nsp1691T91TacGacT23B.1.466.20.000782
ORF1ab/nsp1691T91TacGacA13B.1.466.20.000391
ORF1ab/nsp1691T91TacGacT23D.20.00015
ORF1ab/nsp1691T91TacGacC13D.20.000075
ORF1ab/nsp1691T91TacGacT23P.20.000373
ORF1ab/nsp1691T91TacGacA13P.20.000187
ORF1ab/nsp1691T91TacGacT33Q.10.000379
ORF1ab/nsp1691T91TacGacA23R.10.00018
ORF1ab/nsp1691T91TacGacT13R.10.00009
ORF1ab/nsp1691T91TacGacT22AD.20.000438
ORF1ab/nsp1691T91TacGacA22AP.10.003003
ORF1ab/nsp1691T91TacGacT22AY.1060.00067
ORF1ab/nsp1691T91TacGacA12AY.1080.001103
ORF1ab/nsp1691T91TacGacT12AY.1080.001103
ORF1ab/nsp1691T91TacGacA12AY.120.10.000321
ORF1ab/nsp1691T91TacGacC12AY.120.10.000321
ORF1ab/nsp1691T91TacGacT12AY.16.10.00047
ORF1ab/nsp1691T91TacGacC12AY.16.10.00047
ORF1ab/nsp1691T91TacGacA22AY.4.20.000043
ORF1ab/nsp1691T91TacGacT22AY.5.10.007519
ORF1ab/nsp1691T91TacGacT12AY.75.10.00018
ORF1ab/nsp1691T91TacGacA12AY.75.10.00018
ORF1ab/nsp1691T91TacGacT22B.1.1.1890.003026
ORF1ab/nsp1691T91TacGacT22B.1.1.1920.004619
ORF1ab/nsp1691T91TacGacA22B.1.1.2160.001781
ORF1ab/nsp1691T91TacGacT22B.1.1.250.001137
ORF1ab/nsp1691T91TacGacT22B.1.1.330.000842
ORF1ab/nsp1691T91TacGacT22B.1.1700.008621
ORF1ab/nsp1691T91TacGacT22B.1.221.20.008032
ORF1ab/nsp1691T91TacGacT22B.1.3110.000549
ORF1ab/nsp1691T91TacGacA22B.1.36.360.001204
ORF1ab/nsp1691T91TacGacT22B.1.36.380.003284
ORF1ab/nsp1691T91TacGacT22B.1.3670.001585
ORF1ab/nsp1691T91TacGacT12B.1.4620.007246
ORF1ab/nsp1691T91TacGacC12B.1.4620.007246
ORF1ab/nsp1691T91TacGacT22B.1.4970.00063
ORF1ab/nsp1691T91TacGacT22B.1.5090.001732
ORF1ab/nsp1691T91TacGacT22B.1.5680.002222
ORF1ab/nsp1691T91TacGacT22B.1.6090.000959
ORF1ab/nsp1691T91TacGacT22B.390.004662
ORF1ab/nsp1691T91TacGacT12C.360.000911
ORF1ab/nsp1691T91TacGacA12C.360.000911
ORF1ab/nsp1691T91TacGacT22P.1.170.000324
ORF1ab/nsp1691T91TacGacA110.055556
ORF1ab/nsp1691T91TacGacA11AU.30.00211
ORF1ab/nsp1691T91TacGacT11AY.1090.00074
ORF1ab/nsp1691T91TacGacT11AY.1110.000183
ORF1ab/nsp1691T91TacGacA11AY.1160.000287
ORF1ab/nsp1691T91TacGacT11AY.1180.000063
ORF1ab/nsp1691T91TacGacT11AY.140.000088
ORF1ab/nsp1691T91TacGacA11AY.29.10.000221
ORF1ab/nsp1691T91TacGacT11AY.3.10.000085
ORF1ab/nsp1691T91TacGacA11AY.320.000532
ORF1ab/nsp1691T91TacGacT11AY.34.10.00051
ORF1ab/nsp1691T91TacGacT11AY.350.000233
ORF1ab/nsp1691T91TacGacT11AY.360.000148
ORF1ab/nsp1691T91TacGacT11AY.4.2.10.000149
ORF1ab/nsp1691T91TacGacT11AY.410.000294
ORF1ab/nsp1691T91TacGacA11AY.46.10.001027
ORF1ab/nsp1691T91TacGacT11AY.5.30.000337
ORF1ab/nsp1691T91TacGacT11AY.540.000095
ORF1ab/nsp1691T91TacGacT11AY.620.000436
ORF1ab/nsp1691T91TacGacT11AY.670.000464
ORF1ab/nsp1691T91TacGacT11AY.680.000274
ORF1ab/nsp1691T91TacGacT11AY.70.000196
ORF1ab/nsp1691T91TacGacT11AY.7.10.000113
ORF1ab/nsp1691T91TacGacT11AY.740.000116
ORF1ab/nsp1691T91TacGacA11AY.790.001211
ORF1ab/nsp1691T91TacGacT11AY.9.10.000084
ORF1ab/nsp1691T91TacGacT11AY.900.000684
ORF1ab/nsp1691T91TacGacT11AY.980.000079
ORF1ab/nsp1691T91TacGacT11AY.99.10.001553
ORF1ab/nsp1691T91TacGacA11B.1.1.2200.001859
ORF1ab/nsp1691T91TacGacT11B.1.1.2690.001353
ORF1ab/nsp1691T91TacGacT11B.1.1.2740.005051
ORF1ab/nsp1691T91TacGacT11B.1.1.3060.000438
ORF1ab/nsp1691T91TacGacT11B.1.1.3110.000358
ORF1ab/nsp1691T91TacGacT11B.1.1.3120.001912
ORF1ab/nsp1691T91TacGacT11B.1.1.3180.000302
ORF1ab/nsp1691T91TacGacT11B.1.1.370.000193
ORF1ab/nsp1691T91TacGacT11B.1.1.3720.000689
ORF1ab/nsp1691T91TacGacT11B.1.1.3820.035714
ORF1ab/nsp1691T91TacGacT11B.1.1.4190.007407
ORF1ab/nsp1691T91TacGacA11B.1.1.500.000679
ORF1ab/nsp1691T91TacGacT11B.1.1110.001175
ORF1ab/nsp1691T91TacGacA11B.1.177.270.009434
ORF1ab/nsp1691T91TacGacT11B.1.177.310.011494
ORF1ab/nsp1691T91TacGacT11B.1.177.380.010417
ORF1ab/nsp1691T91TacGacT11B.1.177.40.000211
ORF1ab/nsp1691T91TacGacA11B.1.177.480.003125
ORF1ab/nsp1691T91TacGacT11B.1.214.20.0006
ORF1ab/nsp1691T91TacGacT11B.1.220.001318
ORF1ab/nsp1691T91TacGacT11B.1.2340.000132
ORF1ab/nsp1691T91TacGacT11B.1.258.170.000104
ORF1ab/nsp1691T91TacGacT11B.1.2790.000514
ORF1ab/nsp1691T91TacGacT11B.1.3190.003049
ORF1ab/nsp1691T91TacGacT11B.1.3200.001245
ORF1ab/nsp1691T91TacGacT11B.1.3320.003497
ORF1ab/nsp1691T91TacGacT11B.1.351.50.0006
ORF1ab/nsp1691T91TacGacT11B.1.36.340.021277
ORF1ab/nsp1691T91TacGacT11B.1.3610.001289
ORF1ab/nsp1691T91TacGacT11B.1.4280.00102
ORF1ab/nsp1691T91TacGacT11B.1.4680.005714
ORF1ab/nsp1691T91TacGacA11B.1.5200.021739
ORF1ab/nsp1691T91TacGacT11B.1.5330.009615
ORF1ab/nsp1691T91TacGacT11B.1.5610.000397
ORF1ab/nsp1691T91TacGacT11B.1.5760.000907
ORF1ab/nsp1691T91TacGacT11B.1.6230.000536
ORF1ab/nsp1691T91TacGacT11B.1.6370.000073
ORF1ab/nsp1691T91TacGacA11B.400.000364
ORF1ab/nsp1691T91TacGacT11B.6.30.026316
ORF1ab/nsp1691T91TacGacT11C.36.30.000567
ORF1ab/nsp1691T91TacGacT11N.50.001767
ORF1ab/nsp1691T91TacGacT11P.1.70.000319
ORF1ab/nsp1691T91TacGacT11Q.30.000145
ORF1ab/nsp1691T91TacGacT11Q.40.000455
ORF1ab/nsp1691T91TacGacA11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.