CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = T140del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16140T140del1T6938del1delacAac-48430.89583321076-21078
ORF1ab/nsp16140T140del1T6938del1delaCaa-a4830.062521076-21078
ORF1ab/nsp16140T140del1T6938del1delaCAa-N4810.020833321076-21078
ORF1ab/nsp16140T140del1T6938del1delAca-ca4810.020833321076-21078

Details of the mutation T140del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16140T140del1acAac-4348All0.000008
ORF1ab/nsp16140T140del1aCaa-a348All0.000001
ORF1ab/nsp16140T140del1aCAa-N148All0
ORF1ab/nsp16140T140del1Aca-ca148All0
ORF1ab/nsp16140T140del1acAac-910B.1.20.000079
ORF1ab/nsp16140T140del1Aca-ca110B.1.20.000009
ORF1ab/nsp16140T140del1acAac-66AY.120.10.001926
ORF1ab/nsp16140T140del1acAac-66AY.440.000037
ORF1ab/nsp16140T140del1acAac-55B.10.000046
ORF1ab/nsp16140T140del1acAac-33B.1.617.20.000011
ORF1ab/nsp16140T140del1acAac-22AY.750.000112
ORF1ab/nsp16140T140del1acAac-12B.1.1.70.000001
ORF1ab/nsp16140T140del1aCaa-a12B.1.1.70.000001
ORF1ab/nsp16140T140del1acAac-11A0.000387
ORF1ab/nsp16140T140del1acAac-11AY.1030.000006
ORF1ab/nsp16140T140del1acAac-11AY.470.000031
ORF1ab/nsp16140T140del1acAac-11AY.540.000095
ORF1ab/nsp16140T140del1acAac-11AY.9.20.000037
ORF1ab/nsp16140T140del1acAac-11B0.000128
ORF1ab/nsp16140T140del1acAac-11B.1.10.000018
ORF1ab/nsp16140T140del1acAac-11B.1.1.5190.00004
ORF1ab/nsp16140T140del1aCAa-N11B.1.1570.002985
ORF1ab/nsp16140T140del1aCaa-a11B.1.177.830.001481
ORF1ab/nsp16140T140del1acAac-11B.1.5160.001957
ORF1ab/nsp16140T140del1aCaa-a11B.1.5640.000426
ORF1ab/nsp16140T140del1acAac-11B.1.5890.007576
ORF1ab/nsp16140T140del1acAac-11B.1.6360.006711