CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = S1del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp161S1delS6799deldelTCT---5555120659-20661

Details of the mutation S1del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp161S1delTCT---5555All0.000011
ORF1ab/nsp161S1delTCT---1919B.1.1.70.000017
ORF1ab/nsp161S1delTCT---880.444444
ORF1ab/nsp161S1delTCT---33B.1.617.20.000011
ORF1ab/nsp161S1delTCT---22AY.4.50.000215
ORF1ab/nsp161S1delTCT---11AY.250.000006
ORF1ab/nsp161S1delTCT---11AY.40.000002
ORF1ab/nsp161S1delTCT---11AY.440.000006
ORF1ab/nsp161S1delTCT---11AY.670.000464
ORF1ab/nsp161S1delTCT---11AY.840.000437
ORF1ab/nsp161S1delTCT---11AY.990.001049
ORF1ab/nsp161S1delTCT---11B.1.10.000018
ORF1ab/nsp161S1delTCT---11B.1.1.1700.001247
ORF1ab/nsp161S1delTCT---11B.1.1.700.000341
ORF1ab/nsp161S1delTCT---11B.1.177.170.000821
ORF1ab/nsp161S1delTCT---11B.1.177.730.000566
ORF1ab/nsp161S1delTCT---11B.1.177.830.001481
ORF1ab/nsp161S1delTCT---11B.1.177.870.000728
ORF1ab/nsp161S1delTCT---11B.1.20.000009
ORF1ab/nsp161S1delTCT---11B.1.2580.000067
ORF1ab/nsp161S1delTCT---11B.1.5250.000113
ORF1ab/nsp161S1delTCT---11B.1.5260.000024
ORF1ab/nsp161S1delTCT---11B.1.5610.000397
ORF1ab/nsp161S1delTCT---11B.1.5960.000087
ORF1ab/nsp161S1delTCT---11B.1.6200.000946
ORF1ab/nsp161S1delTCT---11B.340.013699
ORF1ab/nsp161S1delTCT---11P.1.150.000232
ORF1ab/nsp161S1delTCT---11P.1.70.000319