CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = S1T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp161S1TS6799TnonsynTctAct63620.98412720659-20661
ORF1ab/nsp161S1TS6799TnonsynTcTAcC6310.01587320659-20661

Details of the mutation S1T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp161S1TTctAct6263All0.000012
ORF1ab/nsp161S1TTcTAcC163All0
ORF1ab/nsp161S1TTctAct2525AY.40.000039
ORF1ab/nsp161S1TTctAct1919AY.4.50.002042
ORF1ab/nsp161S1TTctAct55AY.90.000338
ORF1ab/nsp161S1TTctAct44AY.80.002424
ORF1ab/nsp161S1TTctAct22AY.1200.000074
ORF1ab/nsp161S1TTctAct22AY.580.001815
ORF1ab/nsp161S1TTctAct11AY.170.008197
ORF1ab/nsp161S1TTctAct11AY.870.000833
ORF1ab/nsp161S1TTcTAcC11B.10.000009
ORF1ab/nsp161S1TTctAct11B.1.1.70.000001
ORF1ab/nsp161S1TTctAct11B.1.5990.00365
ORF1ab/nsp161S1TTctAct11B.1.617.20.000004