CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp16 : Mut = R216S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp16216R216SR7014SnonsynCgcAgc551455000.99746121304-21306
ORF1ab/nsp16216R216SR7014SnonsynCgCAgT5514140.0025389921304-21306

Details of the mutation R216S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp16216R216SCgcAgc55005514All0.001052
ORF1ab/nsp16216R216SCgCAgT145514All0.000003
ORF1ab/nsp16216R216SCgcAgc13791379B.1.1.70.001235
ORF1ab/nsp16216R216SCgcAgc712712B.1.617.20.002681
ORF1ab/nsp16216R216SCgcAgc596596AY.40.000928
ORF1ab/nsp16216R216SCgcAgc377377AY.1020.009996
ORF1ab/nsp16216R216SCgcAgc207207AY.430.000917
ORF1ab/nsp16216R216SCgcAgc159159AY.1030.000987
ORF1ab/nsp16216R216SCgcAgc126126AY.4.20.002733
ORF1ab/nsp16216R216SCgcAgc103103AY.440.000627
ORF1ab/nsp16216R216SCgcAgc9090AY.98.10.004359
ORF1ab/nsp16216R216SCgcAgc8888B.1.20.000775
ORF1ab/nsp16216R216SCgcAgc8686AY.250.000517
ORF1ab/nsp16216R216SCgcAgc8181AY.50.001673
ORF1ab/nsp16216R216SCgcAgc7979AY.470.002457
ORF1ab/nsp16216R216SCgcAgc7777B.10.000705
ORF1ab/nsp16216R216SCgcAgc7676AY.30.000756
ORF1ab/nsp16216R216SCgcAgc6969AY.60.002838
ORF1ab/nsp16216R216SCgcAgc6363AY.390.001557
ORF1ab/nsp16216R216SCgcAgc5757AY.1110.01044
ORF1ab/nsp16216R216SCgcAgc5454B.1.10.00098
ORF1ab/nsp16216R216SCgcAgc5454B.1.6210.00478
ORF1ab/nsp16216R216SCgcAgc5353AY.840.023185
ORF1ab/nsp16216R216SCgcAgc4848AY.200.001866
ORF1ab/nsp16216R216SCgcAgc4646P.10.000725
ORF1ab/nsp16216R216SCgcAgc4343B.1.1770.000566
ORF1ab/nsp16216R216SCgcAgc3030AY.1180.001879
ORF1ab/nsp16216R216SCgcAgc3030B.1.2580.001996
ORF1ab/nsp16216R216SCgcAgc2828AY.510.025455
ORF1ab/nsp16216R216SCgcAgc2424AY.1000.001104
ORF1ab/nsp16216R216SCgcAgc2323B.1.930.021475
ORF1ab/nsp16216R216SCgcAgc2020AY.460.002082
ORF1ab/nsp16216R216SCgcAgc1919AY.1200.000706
ORF1ab/nsp16216R216SCgcAgc1919AY.260.000538
ORF1ab/nsp16216R216SCgcAgc1919B.1.5260.000447
ORF1ab/nsp16216R216SCgcAgc1919P.20.003546
ORF1ab/nsp16216R216SCgcAgc1616AY.99.20.001475
ORF1ab/nsp16216R216SCgcAgc1515AY.290.000237
ORF1ab/nsp16216R216SCgcAgc1515B.1.1.630.005787
ORF1ab/nsp16216R216SCgcAgc1414B.1.177.860.002568
ORF1ab/nsp16216R216SCgcAgc1414B.1.4290.000329
ORF1ab/nsp16216R216SCgCAgT1214B.60.010919
ORF1ab/nsp16216R216SCgcAgc214B.60.00182
ORF1ab/nsp16216R216SCgcAgc1313AY.980.001027
ORF1ab/nsp16216R216SCgcAgc1313B.1.1.2220.002652
ORF1ab/nsp16216R216SCgcAgc1313B.1.3110.003569
ORF1ab/nsp16216R216SCgcAgc1212AY.1190.000424
ORF1ab/nsp16216R216SCgcAgc1212B.1.120.096
ORF1ab/nsp16216R216SCgcAgc1111P.1.140.000526
ORF1ab/nsp16216R216SCgcAgc99AY.1040.017857
ORF1ab/nsp16216R216SCgcAgc88AY.3.10.000682
ORF1ab/nsp16216R216SCgcAgc88AY.450.000973
ORF1ab/nsp16216R216SCgcAgc88AY.750.000448
ORF1ab/nsp16216R216SCgcAgc88AY.910.005844
ORF1ab/nsp16216R216SCgcAgc88B.1.1.390.004077
ORF1ab/nsp16216R216SCgcAgc77AY.46.60.000505
ORF1ab/nsp16216R216SCgcAgc77AY.9.20.000257
ORF1ab/nsp16216R216SCgcAgc66A.20.003971
ORF1ab/nsp16216R216SCgcAgc66AY.1060.002009
ORF1ab/nsp16216R216SCgcAgc66AY.1170.000507
ORF1ab/nsp16216R216SCgcAgc66AY.5.30.002024
ORF1ab/nsp16216R216SCgcAgc66AY.5.40.00166
ORF1ab/nsp16216R216SCgcAgc66AY.540.000572
ORF1ab/nsp16216R216SCgcAgc66AY.930.001638
ORF1ab/nsp16216R216SCgcAgc66B.1.1600.000187
ORF1ab/nsp16216R216SCgcAgc66B.1.6370.000438
ORF1ab/nsp16216R216SCgcAgc55AY.130.000805
ORF1ab/nsp16216R216SCgcAgc55AY.230.000349
ORF1ab/nsp16216R216SCgcAgc55AY.280.009452
ORF1ab/nsp16216R216SCgcAgc55AY.360.000741
ORF1ab/nsp16216R216SCgcAgc55AY.46.20.003177
ORF1ab/nsp16216R216SCgcAgc45B.1.1.10.001307
ORF1ab/nsp16216R216SCgCAgT15B.1.1.10.000327
ORF1ab/nsp16216R216SCgcAgc55B.1.1.3220.04386
ORF1ab/nsp16216R216SCgcAgc55B.1.2060.004078
ORF1ab/nsp16216R216SCgcAgc55B.1.3510.000149
ORF1ab/nsp16216R216SCgcAgc55B.1.5870.009488
ORF1ab/nsp16216R216SCgcAgc44AU.20.009685
ORF1ab/nsp16216R216SCgcAgc44AY.1090.002959
ORF1ab/nsp16216R216SCgcAgc44AY.1130.00057
ORF1ab/nsp16216R216SCgcAgc44AY.1140.000924
ORF1ab/nsp16216R216SCgcAgc44B.1.1.280.001245
ORF1ab/nsp16216R216SCgcAgc44B.1.2210.000284
ORF1ab/nsp16216R216SCgcAgc44B.1.2340.000528
ORF1ab/nsp16216R216SCgcAgc44B.1.2430.000278
ORF1ab/nsp16216R216SCgcAgc44B.1.258.170.000416
ORF1ab/nsp16216R216SCgcAgc44B.1.4270.000202
ORF1ab/nsp16216R216SCgcAgc44B.1.5250.000453
ORF1ab/nsp16216R216SCgcAgc44B.1.5640.001704
ORF1ab/nsp16216R216SCgcAgc44B.1.5950.001044
ORF1ab/nsp16216R216SCgcAgc33A.23.10.002113
ORF1ab/nsp16216R216SCgcAgc33AY.1050.001929
ORF1ab/nsp16216R216SCgcAgc33AY.340.000291
ORF1ab/nsp16216R216SCgcAgc33AY.350.000699
ORF1ab/nsp16216R216SCgcAgc33AY.4.50.000322
ORF1ab/nsp16216R216SCgcAgc33AY.420.000121
ORF1ab/nsp16216R216SCgcAgc33AY.75.10.000541
ORF1ab/nsp16216R216SCgcAgc33AY.90.000203
ORF1ab/nsp16216R216SCgcAgc33B.1.1.2140.000166
ORF1ab/nsp16216R216SCgcAgc33B.1.1.2510.02381
ORF1ab/nsp16216R216SCgcAgc33B.1.360.000438
ORF1ab/nsp16216R216SCgcAgc33B.1.4990.003151
ORF1ab/nsp16216R216SCgcAgc33C.370.000348
ORF1ab/nsp16216R216SCgcAgc33P.1.150.000697
ORF1ab/nsp16216R216SCgcAgc22AY.1100.000225
ORF1ab/nsp16216R216SCgcAgc22AY.1210.000271
ORF1ab/nsp16216R216SCgcAgc22AY.160.000759
ORF1ab/nsp16216R216SCgcAgc22AY.34.10.00102
ORF1ab/nsp16216R216SCgcAgc22AY.46.10.002053
ORF1ab/nsp16216R216SCgcAgc22AY.680.000547
ORF1ab/nsp16216R216SCgcAgc22AY.880.001768
ORF1ab/nsp16216R216SCgcAgc22AY.9.10.000167
ORF1ab/nsp16216R216SCgcAgc22AY.950.001522
ORF1ab/nsp16216R216SCgcAgc22B.1.1.1410.004024
ORF1ab/nsp16216R216SCgcAgc22B.1.1.3180.000604
ORF1ab/nsp16216R216SCgcAgc22B.1.1.330.000842
ORF1ab/nsp16216R216SCgcAgc22B.1.1.370.000386
ORF1ab/nsp16216R216SCgcAgc22B.1.1110.00235
ORF1ab/nsp16216R216SCgCAgT12B.1.177.120.000152
ORF1ab/nsp16216R216SCgcAgc12B.1.177.120.000152
ORF1ab/nsp16216R216SCgcAgc22B.1.177.150.001262
ORF1ab/nsp16216R216SCgcAgc22B.1.177.210.000153
ORF1ab/nsp16216R216SCgcAgc22B.1.177.430.002954
ORF1ab/nsp16216R216SCgcAgc22B.1.177.600.000437
ORF1ab/nsp16216R216SCgcAgc22B.1.177.70.00033
ORF1ab/nsp16216R216SCgcAgc22B.1.177.730.001133
ORF1ab/nsp16216R216SCgcAgc22B.1.221.30.001667
ORF1ab/nsp16216R216SCgcAgc22B.1.3690.00057
ORF1ab/nsp16216R216SCgcAgc22B.1.5770.001375
ORF1ab/nsp16216R216SCgcAgc22B.1.5960.000174
ORF1ab/nsp16216R216SCgcAgc22B.1.617.10.000258
ORF1ab/nsp16216R216SCgcAgc22B.1.6230.001073
ORF1ab/nsp16216R216SCgcAgc22P.1.100.000539
ORF1ab/nsp16216R216SCgcAgc22P.1.120.000968
ORF1ab/nsp16216R216SCgcAgc22P.1.170.000324
ORF1ab/nsp16216R216SCgcAgc22Q.10.000253
ORF1ab/nsp16216R216SCgcAgc22Q.80.00033
ORF1ab/nsp16216R216SCgcAgc11A.2.50.000499
ORF1ab/nsp16216R216SCgcAgc11A.2.5.20.001572
ORF1ab/nsp16216R216SCgcAgc11AY.1010.00049
ORF1ab/nsp16216R216SCgcAgc11AY.1160.000287
ORF1ab/nsp16216R216SCgcAgc11AY.116.10.000311
ORF1ab/nsp16216R216SCgcAgc11AY.190.00114
ORF1ab/nsp16216R216SCgcAgc11AY.210.001898
ORF1ab/nsp16216R216SCgcAgc11AY.270.000065
ORF1ab/nsp16216R216SCgcAgc11AY.29.10.000221
ORF1ab/nsp16216R216SCgcAgc11AY.300.000396
ORF1ab/nsp16216R216SCgcAgc11AY.320.000532
ORF1ab/nsp16216R216SCgcAgc11AY.330.000067
ORF1ab/nsp16216R216SCgcAgc11AY.370.000316
ORF1ab/nsp16216R216SCgcAgc11AY.39.10.00004
ORF1ab/nsp16216R216SCgcAgc11AY.4.2.10.000149
ORF1ab/nsp16216R216SCgcAgc11AY.4.30.000842
ORF1ab/nsp16216R216SCgcAgc11AY.4.40.000409
ORF1ab/nsp16216R216SCgcAgc11AY.46.40.000165
ORF1ab/nsp16216R216SCgcAgc11AY.480.000465
ORF1ab/nsp16216R216SCgcAgc11AY.550.000917
ORF1ab/nsp16216R216SCgcAgc11AY.610.000105
ORF1ab/nsp16216R216SCgcAgc11AY.640.000595
ORF1ab/nsp16216R216SCgcAgc11AY.80.000606
ORF1ab/nsp16216R216SCgcAgc11AY.850.000427
ORF1ab/nsp16216R216SCgcAgc11AY.860.00083
ORF1ab/nsp16216R216SCgcAgc11B0.000128
ORF1ab/nsp16216R216SCgcAgc11B.1.1.1570.000913
ORF1ab/nsp16216R216SCgcAgc11B.1.1.1590.004673
ORF1ab/nsp16216R216SCgcAgc11B.1.1.1980.001468
ORF1ab/nsp16216R216SCgcAgc11B.1.1.2160.00089
ORF1ab/nsp16216R216SCgcAgc11B.1.1.2200.001859
ORF1ab/nsp16216R216SCgcAgc11B.1.1.3010.001179
ORF1ab/nsp16216R216SCgcAgc11B.1.1.3170.000412
ORF1ab/nsp16216R216SCgcAgc11B.1.1.3260.001761
ORF1ab/nsp16216R216SCgcAgc11B.1.1.4070.041667
ORF1ab/nsp16216R216SCgcAgc11B.1.1.4110.014706
ORF1ab/nsp16216R216SCgcAgc11B.1.1.4860.001577
ORF1ab/nsp16216R216SCgcAgc11B.1.1.500.000679
ORF1ab/nsp16216R216SCgcAgc11B.1.1.5230.001563
ORF1ab/nsp16216R216SCgcAgc11B.1.1.740.00431
ORF1ab/nsp16216R216SCgcAgc11B.1.1280.000635
ORF1ab/nsp16216R216SCgcAgc11B.1.177.20.004545
ORF1ab/nsp16216R216SCgcAgc11B.1.177.40.000211
ORF1ab/nsp16216R216SCgcAgc11B.1.177.420.000894
ORF1ab/nsp16216R216SCgcAgc11B.1.177.570.000281
ORF1ab/nsp16216R216SCgcAgc11B.1.177.690.001484
ORF1ab/nsp16216R216SCgcAgc11B.1.177.810.000189
ORF1ab/nsp16216R216SCgcAgc11B.1.177.90.001332
ORF1ab/nsp16216R216SCgcAgc11B.1.258.120.007874
ORF1ab/nsp16216R216SCgcAgc11B.1.258.60.019608
ORF1ab/nsp16216R216SCgcAgc11B.1.2790.000514
ORF1ab/nsp16216R216SCgcAgc11B.1.3500.002933
ORF1ab/nsp16216R216SCgcAgc11B.1.36.170.000494
ORF1ab/nsp16216R216SCgcAgc11B.1.36.290.000517
ORF1ab/nsp16216R216SCgcAgc11B.1.438.10.000107
ORF1ab/nsp16216R216SCgcAgc11B.1.5230.002451
ORF1ab/nsp16216R216SCgcAgc11B.1.5390.017544
ORF1ab/nsp16216R216SCgcAgc11B.1.5760.000907
ORF1ab/nsp16216R216SCgcAgc11B.1.5880.00091
ORF1ab/nsp16216R216SCgcAgc11B.1.621.10.000506
ORF1ab/nsp16216R216SCgcAgc11B.1.6250.002353
ORF1ab/nsp16216R216SCgcAgc11B.1.700.02439
ORF1ab/nsp16216R216SCgcAgc11B.6.60.000889
ORF1ab/nsp16216R216SCgcAgc11C.36.30.000567
ORF1ab/nsp16216R216SCgcAgc11D.20.000075
ORF1ab/nsp16216R216SCgcAgc11P.1.20.001156
ORF1ab/nsp16216R216SCgcAgc11P.1.40.000977
ORF1ab/nsp16216R216SCgcAgc11P.1.70.000319
ORF1ab/nsp16216R216SCgcAgc11Q.20.000613
ORF1ab/nsp16216R216SCgcAgc11Q.30.000145
ORF1ab/nsp16216R216SCgcAgc11Q.40.000455
ORF1ab/nsp16216R216SCgcAgc11Q.50.016949
ORF1ab/nsp16216R216SCgcAgc11Q.70.001111